Wall clock time and date at job start Sat Apr 11 2020 06:42:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.35455 * 126.38813 * 2 1
4 4 N 1.33180 * 108.62498 * 179.97438 * 3 2 1
5 5 C 1.32661 * 109.12300 * 359.97438 * 4 3 2
6 6 C 1.40650 * 132.14627 * 180.22972 * 5 4 3
7 7 C 1.38433 * 119.08598 * 180.20570 * 6 5 4
8 8 C 1.47652 * 120.37320 * 179.80398 * 7 6 5
9 9 O 1.21585 * 120.00013 * 359.71932 * 8 7 6
10 10 N 1.34775 * 120.00477 * 179.72390 * 8 7 6
11 11 C 1.46491 * 120.00346 * 179.97438 * 10 8 7
12 12 H 1.08999 * 109.46181 * 324.97115 * 11 10 8
13 13 C 1.53350 * 109.42533 * 84.86766 * 11 10 8
14 14 C 1.53190 * 109.15046 * 58.74932 * 13 11 10
15 15 N 1.46931 * 108.89391 * 54.57977 * 14 13 11
16 16 C 1.36932 * 120.63108 * 126.34027 * 15 14 13
17 17 H 1.07998 * 120.00257 * 209.05445 * 16 15 14
18 18 C 1.38815 * 120.00022 * 29.05218 * 16 15 14
19 19 N 1.31620 * 120.00010 * 15.04378 * 18 16 15
20 20 Si 1.86798 * 120.00070 * 195.04313 * 18 16 15
21 21 H 1.48503 * 109.47325 * 359.97438 * 20 18 16
22 22 H 1.48497 * 109.47084 * 120.00070 * 20 18 16
23 23 H 1.48498 * 109.47107 * 240.00011 * 20 18 16
24 24 C 1.46924 * 118.73672 * 306.32653 * 15 14 13
25 25 H 1.09002 * 109.58718 * 293.81244 * 24 15 14
26 26 C 1.52999 * 109.58825 * 173.39357 * 24 15 14
27 27 C 1.53048 * 109.46181 * 204.99724 * 11 10 8
28 28 C 1.41782 * 119.25538 * 359.52715 * 7 6 5
29 29 C 1.34533 * 120.14672 * 0.27170 * 28 7 6
30 30 N 1.36435 * 126.39624 * 179.97438 * 2 1 3
31 31 H 1.09000 * 109.46884 * 270.02582 * 1 2 3
32 32 H 1.08990 * 109.47346 * 30.02926 * 1 2 3
33 33 H 1.08999 * 109.46975 * 150.03045 * 1 2 3
34 34 H 1.08004 * 125.68503 * 359.96948 * 3 2 1
35 35 H 1.07997 * 120.45451 * 359.97438 * 6 5 4
36 36 H 0.97010 * 119.99476 * 359.97438 * 10 8 7
37 37 H 1.09002 * 109.68189 * 298.78981 * 13 11 10
38 38 H 1.08999 * 109.47956 * 178.58922 * 13 11 10
39 39 H 1.09006 * 109.58831 * 294.72750 * 14 13 11
40 40 H 1.09000 * 109.59385 * 174.43893 * 14 13 11
41 41 H 0.96996 * 120.00153 * 179.97438 * 19 18 16
42 42 H 1.09004 * 109.47399 * 59.99191 * 26 24 15
43 43 H 1.08996 * 109.47328 * 179.97438 * 26 24 15
44 44 H 1.09001 * 109.46880 * 299.99915 * 26 24 15
45 45 H 1.08994 * 109.50106 * 181.40771 * 27 11 10
46 46 H 1.08994 * 109.49532 * 61.30340 * 27 11 10
47 47 H 1.07999 * 119.92166 * 180.25306 * 28 7 6
48 48 H 1.08006 * 119.52224 * 179.97438 * 29 28 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3106 1.0904 0.0000
4 7 3.5789 0.6841 0.0006
5 6 3.6104 -0.6421 0.0015
6 6 4.6753 -1.5609 0.0065
7 6 4.3946 -2.9165 0.0018
8 6 5.4906 -3.9058 0.0026
9 8 6.6474 -3.5316 0.0022
10 7 5.2088 -5.2238 0.0036
11 6 6.2962 -6.2054 0.0038
12 1 7.1294 -5.8244 -0.5868
13 6 6.7621 -6.4501 1.4441
14 6 5.5787 -6.9538 2.2764
15 7 5.0023 -8.1341 1.6181
16 6 4.8378 -9.3063 2.3067
17 1 4.8739 -10.2500 1.7828
18 6 4.6246 -9.2815 3.6782
19 7 4.2866 -8.1563 4.2714
20 14 4.8173 -10.8452 4.6817
21 1 5.1995 -11.9652 3.7846
22 1 5.8738 -10.6485 5.7065
23 1 3.5312 -11.1650 5.3517
24 6 4.6054 -8.0328 0.2071
25 1 3.7710 -7.3380 0.1112
26 6 4.1900 -9.4118 -0.3092
27 6 5.7981 -7.5183 -0.6049
28 6 3.0428 -3.3441 0.0022
29 6 2.0477 -2.4388 0.0016
30 7 2.3166 -1.0982 0.0005
31 1 -0.3633 0.0005 1.0277
32 1 -0.3633 0.8896 -0.5142
33 1 -0.3633 -0.8903 -0.5134
34 1 1.9781 2.1180 -0.0005
35 1 5.6979 -1.2136 0.0102
36 1 4.2858 -5.5224 0.0042
37 1 7.1378 -5.5204 1.8714
38 1 7.5542 -7.1989 1.4477
39 1 4.8237 -6.1709 2.3492
40 1 5.9226 -7.2237 3.2748
41 1 4.1373 -8.1390 5.2297
42 1 3.3494 -9.7816 0.2780
43 1 3.8956 -9.3344 -1.3558
44 1 5.0288 -10.1019 -0.2174
45 1 6.5993 -8.2569 -0.5823
46 1 5.4894 -7.3471 -1.6361
47 1 2.8115 -4.3991 0.0027
48 1 1.0216 -2.7758 0.0015
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000947315047.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:07
Heat of formation + Delta-G solvation = 56.408526 kcal
Electronic energy + Delta-G solvation = -30087.706373 eV
Core-core repulsion = 26143.647270 eV
Total energy + Delta-G solvation = -3944.059104 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-43.92947 -41.30862 -39.38586 -38.02452 -35.96460 -35.01277 -34.11065 -33.07583
-32.23121 -31.31058 -30.99117 -28.16403 -27.69085 -26.78783 -25.16715 -24.32812
-23.71616 -22.33182 -22.20598 -21.88066 -20.28230 -18.98950 -18.48494 -18.19322
-17.55657 -17.17471 -17.08589 -16.63732 -16.18725 -15.77786 -15.73012 -15.63718
-15.43806 -14.81932 -14.63762 -14.59324 -14.41155 -14.27815 -14.02297 -13.85533
-13.33774 -13.32252 -13.17092 -12.89079 -12.87427 -12.84488 -12.64694 -12.44876
-12.31020 -12.12704 -11.96082 -11.89837 -11.68085 -11.40278 -11.23366 -11.14037
-10.96670 -10.49453 -10.08530 -9.92113 -8.80149 -8.57058 -7.80414 -5.25144
-0.64206 -0.00304 1.46215 1.49180 1.50408 1.56172 1.58044 1.89913
2.05029 2.54268 2.55474 3.16265 3.35272 3.40216 3.53212 3.64638
3.67854 3.90914 3.94020 4.06474 4.09662 4.20283 4.34013 4.34722
4.46054 4.49719 4.62707 4.67511 4.74769 4.79083 4.81125 4.90551
4.95925 5.00410 5.02602 5.06734 5.10986 5.13950 5.19260 5.35816
5.44002 5.54346 5.56964 5.57478 5.61542 5.76425 5.80024 5.96886
6.46591 6.49163 6.73797 7.12509 7.21889 7.94830 8.45136 9.25337
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.014812 B = 0.002778 C = 0.002609
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1889.940448 B =10076.577267 C =10729.198127
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C -0.051 4.051
3 C 0.015 3.985
4 N -0.512 5.512
5 C 0.177 3.823
6 C -0.018 4.018
7 C -0.123 4.123
8 C 0.562 3.438
9 O -0.576 6.576
10 N -0.695 5.695
11 C 0.159 3.841
12 H 0.079 0.921
13 C -0.144 4.144
14 C 0.187 3.813
15 N -0.601 5.601
16 C -0.242 4.242
17 H 0.076 0.924
18 C -0.053 4.053
19 N -0.935 5.935
20 Si 0.955 3.045
21 H -0.265 1.265
22 H -0.300 1.300
23 H -0.296 1.296
24 C 0.160 3.840
25 H 0.030 0.970
26 C -0.132 4.132
27 C -0.126 4.126
28 C -0.120 4.120
29 C 0.060 3.940
30 N -0.356 5.356
31 H 0.085 0.915
32 H 0.106 0.894
33 H 0.080 0.920
34 H 0.211 0.789
35 H 0.150 0.850
36 H 0.408 0.592
37 H 0.043 0.957
38 H 0.063 0.937
39 H 0.001 0.999
40 H 0.045 0.955
41 H 0.244 0.756
42 H 0.042 0.958
43 H 0.078 0.922
44 H 0.047 0.953
45 H 0.076 0.924
46 H 0.093 0.907
47 H 0.175 0.825
48 H 0.210 0.790
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.933 11.430 -13.313 20.162
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.166 4.166
3 C -0.138 4.138
4 N -0.233 5.233
5 C -0.063 4.063
6 C -0.039 4.039
7 C -0.132 4.132
8 C 0.349 3.651
9 O -0.457 6.457
10 N -0.347 5.347
11 C 0.055 3.945
12 H 0.098 0.902
13 C -0.184 4.184
14 C 0.061 3.939
15 N -0.325 5.325
16 C -0.373 4.373
17 H 0.094 0.906
18 C -0.248 4.248
19 N -0.582 5.582
20 Si 0.784 3.216
21 H -0.189 1.189
22 H -0.227 1.227
23 H -0.223 1.223
24 C 0.055 3.945
25 H 0.047 0.953
26 C -0.189 4.189
27 C -0.165 4.165
28 C -0.140 4.140
29 C -0.061 4.061
30 N -0.029 5.029
31 H 0.103 0.897
32 H 0.125 0.875
33 H 0.099 0.901
34 H 0.227 0.773
35 H 0.168 0.832
36 H 0.247 0.753
37 H 0.062 0.938
38 H 0.081 0.919
39 H 0.019 0.981
40 H 0.064 0.936
41 H 0.053 0.947
42 H 0.061 0.939
43 H 0.096 0.904
44 H 0.066 0.934
45 H 0.094 0.906
46 H 0.111 0.889
47 H 0.192 0.808
48 H 0.226 0.774
Dipole moment (debyes) X Y Z Total
from point charges -8.515 12.138 -13.180 19.838
hybrid contribution -0.451 -1.207 1.392 1.897
sum -8.966 10.931 -11.788 18.407
Atomic orbital electron populations
1.20407 0.82964 1.05380 1.04149 1.22124 0.96696 0.84307 1.13485
1.23012 0.86980 1.00594 1.03165 1.70613 1.23976 1.06692 1.22006
1.20648 0.84655 0.91029 1.09961 1.20581 0.98054 0.90026 0.95284
1.19880 0.94318 0.92693 1.06353 1.18157 0.87986 0.82958 0.75958
1.90754 1.22244 1.80599 1.52070 1.45918 1.11177 1.04642 1.72953
1.20887 0.89369 0.88475 0.95757 0.90250 1.22450 0.99549 0.99535
0.96853 1.20389 0.91144 0.87377 0.94955 1.44350 1.70919 1.09619
1.07590 1.19519 1.40711 0.86717 0.90347 0.90622 1.25715 1.00830
0.98867 0.99359 1.70159 1.51919 1.27064 1.09040 0.85387 0.76485
0.80798 0.78884 1.18945 1.22715 1.22315 1.20670 0.93703 0.96312
0.83833 0.95274 1.21750 1.00790 0.96148 1.00207 1.22265 0.99912
0.94861 0.99502 1.21049 0.89679 1.01641 1.01676 1.22032 1.03019
0.79083 1.01917 1.42963 1.08321 1.06856 1.44740 0.89672 0.87500
0.90141 0.77260 0.83223 0.75329 0.93787 0.91876 0.98055 0.93646
0.94670 0.93913 0.90369 0.93408 0.90581 0.88890 0.80795 0.77365
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.55 10.30 71.24 0.73 0.18 16
2 C -0.05 -0.90 7.02 41.20 0.29 -0.61 16
3 C 0.02 0.31 11.75 83.84 0.99 1.30 16
4 N -0.51 -14.76 11.31 -194.40 -2.20 -16.96 16
5 C 0.18 5.01 7.79 133.97 1.04 6.06 16
6 C -0.02 -0.53 9.70 22.91 0.22 -0.30 16
7 C -0.12 -3.36 5.90 -19.87 -0.12 -3.48 16
8 C 0.56 17.96 7.74 86.73 0.67 18.63 16
9 O -0.58 -22.39 16.03 -3.98 -0.06 -22.46 16
10 N -0.70 -20.35 4.22 -444.97 -1.88 -22.23 16
11 C 0.16 5.05 2.78 45.13 0.13 5.18 16
12 H 0.08 2.53 7.58 -2.39 -0.02 2.51 16
13 C -0.14 -5.57 5.80 30.78 0.18 -5.39 16
14 C 0.19 8.66 5.02 86.36 0.43 9.10 16
15 N -0.60 -26.96 2.99 -675.22 -2.02 -28.98 16
16 C -0.24 -12.23 8.60 84.04 0.72 -11.51 16
17 H 0.08 3.68 6.21 -2.91 -0.02 3.66 16
18 C -0.05 -2.83 4.96 84.86 0.42 -2.41 16
19 N -0.93 -53.56 11.14 21.65 0.24 -53.32 16
20 Si 0.95 43.76 29.58 68.60 2.03 45.79 16
21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16
22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16
23 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16
24 C 0.16 5.43 3.20 44.97 0.14 5.57 16
25 H 0.03 0.95 6.64 -2.39 -0.02 0.94 16
26 C -0.13 -4.04 7.94 71.98 0.57 -3.47 16
27 C -0.13 -3.55 5.08 30.67 0.16 -3.40 16
28 C -0.12 -2.40 9.48 22.30 0.21 -2.19 16
29 C 0.06 1.02 10.80 83.08 0.90 1.91 16
30 N -0.36 -7.75 2.94 -339.14 -1.00 -8.75 16
31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16
32 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16
33 H 0.08 0.44 8.12 -2.39 -0.02 0.42 16
34 H 0.21 2.69 8.06 -2.91 -0.02 2.66 16
35 H 0.15 4.61 7.67 -2.91 -0.02 4.59 16
36 H 0.41 10.50 4.93 -92.70 -0.46 10.04 16
37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16
38 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16
39 H 0.00 0.07 7.74 -2.38 -0.02 0.05 16
40 H 0.05 2.48 6.06 -2.39 -0.01 2.47 16
41 H 0.24 13.81 8.31 -92.71 -0.77 13.04 16
42 H 0.04 1.47 7.62 -2.38 -0.02 1.46 16
43 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16
44 H 0.05 1.53 7.45 -2.39 -0.02 1.52 16
45 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16
46 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16
47 H 0.17 2.71 6.46 -2.91 -0.02 2.69 16
48 H 0.21 1.68 8.04 -2.91 -0.02 1.66 16
Total: -1.00 -73.34 381.26 3.33 -70.01
By element:
Atomic # 1 Polarization: 21.19 SS G_CDS: 0.53 Total: 21.72 kcal
Atomic # 6 Polarization: 7.48 SS G_CDS: 7.69 Total: 15.17 kcal
Atomic # 7 Polarization: -123.38 SS G_CDS: -6.85 Total: -130.23 kcal
Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.46 kcal
Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal
Total: -73.34 3.33 -70.01 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000947315047.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.416 kcal
(2) G-P(sol) polarization free energy of solvation -73.339 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.077 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.007 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds