Wall clock time and date at job start Sat Apr 11 2020 06:43:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.35455 * 126.38604 * 2 1
4 4 N 1.33184 * 108.61838 * 179.97438 * 3 2 1
5 5 C 1.32651 * 109.12642 * 359.97438 * 4 3 2
6 6 C 1.40650 * 132.14771 * 180.02562 * 5 4 3
7 7 C 1.38437 * 119.09152 * 179.97438 * 6 5 4
8 8 C 1.47645 * 120.37412 * 179.97438 * 7 6 5
9 9 O 1.21589 * 120.00324 * 359.97438 * 8 7 6
10 10 N 1.34783 * 120.00130 * 179.97438 * 8 7 6
11 11 C 1.46500 * 119.99996 * 179.97438 * 10 8 7
12 12 H 1.09000 * 109.50072 * 325.00439 * 11 10 8
13 13 C 1.53034 * 109.49899 * 204.93438 * 11 10 8
14 14 C 1.53042 * 109.54231 * 178.68419 * 13 11 10
15 15 C 1.53190 * 109.30763 * 61.36592 * 14 13 11
16 16 H 1.08996 * 109.59117 * 65.29703 * 15 14 13
17 17 C 1.53007 * 109.58622 * 185.57989 * 15 14 13
18 18 N 1.46928 * 108.77967 * 305.36704 * 15 14 13
19 19 C 1.36944 * 120.62869 * 233.61472 * 18 15 14
20 20 H 1.07998 * 120.00060 * 29.01987 * 19 18 15
21 21 C 1.38814 * 119.99435 * 209.01407 * 19 18 15
22 22 N 1.31614 * 120.00194 * 15.01826 * 21 19 18
23 23 Si 1.86798 * 119.99674 * 195.01852 * 21 19 18
24 24 H 1.48503 * 109.47462 * 89.99959 * 23 21 19
25 25 H 1.48506 * 109.47015 * 210.00231 * 23 21 19
26 26 H 1.48508 * 109.47186 * 329.99792 * 23 21 19
27 27 C 1.46935 * 118.76346 * 53.58657 * 18 15 14
28 28 C 1.41775 * 119.25165 * 359.97438 * 7 6 5
29 29 C 1.34537 * 120.14988 * 0.02562 * 28 7 6
30 30 N 1.36436 * 126.39367 * 179.68636 * 2 1 3
31 31 H 1.09001 * 109.47450 * 90.02483 * 1 2 3
32 32 H 1.09000 * 109.47070 * 210.02940 * 1 2 3
33 33 H 1.09007 * 109.47518 * 330.02244 * 1 2 3
34 34 H 1.07993 * 125.69116 * 0.02562 * 3 2 1
35 35 H 1.08002 * 120.45161 * 359.97438 * 6 5 4
36 36 H 0.96996 * 119.99736 * 359.97438 * 10 8 7
37 37 H 1.09001 * 109.46071 * 298.70925 * 13 11 10
38 38 H 1.09009 * 109.46002 * 58.67598 * 13 11 10
39 39 H 1.09000 * 109.49899 * 181.31500 * 14 13 11
40 40 H 1.09002 * 109.49780 * 301.41793 * 14 13 11
41 41 H 1.09003 * 109.47137 * 59.99528 * 17 15 14
42 42 H 1.08997 * 109.47275 * 180.02562 * 17 15 14
43 43 H 1.09004 * 109.47035 * 300.00235 * 17 15 14
44 44 H 0.96997 * 120.00059 * 180.02562 * 22 21 19
45 45 H 1.09000 * 109.61186 * 186.64713 * 27 18 15
46 46 H 1.08991 * 109.55814 * 66.21873 * 27 18 15
47 47 H 1.08000 * 119.92142 * 180.02562 * 28 7 6
48 48 H 1.08004 * 119.51986 * 180.02562 * 29 28 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3105 1.0905 0.0000
4 7 3.5788 0.6840 0.0006
5 6 3.6103 -0.6421 0.0015
6 6 4.6752 -1.5609 0.0028
7 6 4.3945 -2.9165 0.0041
8 6 5.4905 -3.9058 0.0050
9 8 6.6473 -3.5316 0.0041
10 7 5.2086 -5.2239 0.0067
11 6 6.2961 -6.2055 0.0070
12 1 7.1297 -5.8252 -0.5834
13 6 5.7983 -7.5195 -0.5992
14 6 6.9427 -8.5352 -0.6295
15 6 7.4133 -8.8109 0.8020
16 1 6.6152 -9.2986 1.3616
17 6 8.6458 -9.7170 0.7712
18 7 7.7571 -7.5334 1.4411
19 6 8.9841 -7.3514 2.0214
20 1 9.8433 -7.8885 1.6475
21 6 9.1236 -6.4765 3.0900
22 7 8.0584 -6.0508 3.7353
23 14 10.8231 -5.9034 3.6121
24 1 11.1765 -4.6646 2.8733
25 1 10.8258 -5.6274 5.0713
26 1 11.8182 -6.9627 3.3070
27 6 6.7600 -6.4541 1.4457
28 6 3.0428 -3.3441 0.0046
29 6 2.0476 -2.4388 0.0033
30 7 2.3165 -1.0982 0.0060
31 1 -0.3634 -0.0004 -1.0276
32 1 -0.3633 -0.8897 0.5143
33 1 -0.3634 0.8902 0.5135
34 1 1.9782 2.1180 0.0004
35 1 5.6978 -1.2136 0.0029
36 1 4.2858 -5.5224 0.0078
37 1 4.9806 -7.9116 0.0055
38 1 5.4453 -7.3401 -1.6148
39 1 6.5937 -9.4631 -1.0828
40 1 7.7706 -8.1333 -1.2136
41 1 9.4444 -9.2254 0.2155
42 1 8.9788 -9.9123 1.7905
43 1 8.3920 -10.6593 0.2854
44 1 8.1559 -5.4392 4.4818
45 1 7.2068 -5.5449 1.8479
46 1 5.9079 -6.7472 2.0589
47 1 2.8115 -4.3991 0.0060
48 1 1.0215 -2.7758 0.0041
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071511317.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:11
Heat of formation + Delta-G solvation = 74.326190 kcal
Electronic energy + Delta-G solvation = -29751.023264 eV
Core-core repulsion = 25807.741128 eV
Total energy + Delta-G solvation = -3943.282135 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-43.06300 -39.75671 -37.86942 -36.96870 -34.53114 -34.08924 -32.83732 -31.80346
-30.64740 -30.16025 -29.81625 -27.23110 -25.98455 -25.05215 -23.85475 -23.35672
-22.25938 -21.39539 -20.82088 -20.16551 -19.29928 -17.73581 -17.48698 -16.82548
-16.36057 -16.27860 -15.53436 -15.26007 -14.84090 -14.51570 -14.32480 -13.88028
-13.81171 -13.79635 -13.55752 -13.41495 -13.38983 -13.34245 -12.83665 -12.76962
-12.39041 -12.00854 -11.98406 -11.87581 -11.48023 -11.13643 -10.94014 -10.85072
-10.70238 -10.54109 -10.39837 -10.31033 -10.25749 -9.95988 -9.84511 -9.49046
-9.47186 -9.07105 -8.60604 -8.40364 -7.94052 -6.61090 -5.72476 -3.17284
0.36811 0.84328 2.29305 2.48763 2.96413 3.28519 3.45371 3.51349
3.52970 3.69554 4.03082 4.22629 4.32282 4.53746 4.59519 4.68171
4.77248 5.00415 5.11967 5.17245 5.26491 5.33248 5.36191 5.40959
5.48650 5.55142 5.58287 5.65844 5.82404 5.90676 5.95232 6.07803
6.18448 6.25683 6.29600 6.36843 6.38078 6.44221 6.47675 6.61447
6.71735 6.78091 6.88042 7.03935 7.12130 7.31155 7.62235 7.74791
7.81408 7.88957 8.49307 8.53635 9.25935 9.90120 10.44690 11.35488
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.014816 B = 0.002776 C = 0.002459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1889.433413 B =10082.502274 C =11383.765926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C -0.068 4.068
3 C 0.034 3.966
4 N -0.478 5.478
5 C 0.211 3.789
6 C -0.003 4.003
7 C -0.116 4.116
8 C 0.558 3.442
9 O -0.521 6.521
10 N -0.712 5.712
11 C 0.116 3.884
12 H 0.084 0.916
13 C -0.116 4.116
14 C -0.126 4.126
15 C 0.165 3.835
16 H 0.025 0.975
17 C -0.137 4.137
18 N -0.583 5.583
19 C -0.253 4.253
20 H 0.071 0.929
21 C 0.006 3.994
22 N -0.901 5.901
23 Si 0.901 3.099
24 H -0.286 1.286
25 H -0.292 1.292
26 H -0.279 1.279
27 C 0.168 3.832
28 C -0.112 4.112
29 C 0.044 3.956
30 N -0.352 5.352
31 H 0.073 0.927
32 H 0.064 0.936
33 H 0.085 0.915
34 H 0.182 0.818
35 H 0.166 0.834
36 H 0.391 0.609
37 H 0.059 0.941
38 H 0.051 0.949
39 H 0.055 0.945
40 H 0.061 0.939
41 H 0.053 0.947
42 H 0.061 0.939
43 H 0.037 0.963
44 H 0.253 0.747
45 H 0.096 0.904
46 H 0.017 0.983
47 H 0.154 0.846
48 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.498 5.034 -9.970 21.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.182 4.182
3 C -0.120 4.120
4 N -0.197 5.197
5 C -0.030 4.030
6 C -0.024 4.024
7 C -0.126 4.126
8 C 0.343 3.657
9 O -0.397 6.397
10 N -0.362 5.362
11 C 0.011 3.989
12 H 0.102 0.898
13 C -0.154 4.154
14 C -0.166 4.166
15 C 0.058 3.942
16 H 0.042 0.958
17 C -0.194 4.194
18 N -0.306 5.306
19 C -0.383 4.383
20 H 0.088 0.912
21 C -0.193 4.193
22 N -0.545 5.545
23 Si 0.731 3.269
24 H -0.213 1.213
25 H -0.218 1.218
26 H -0.205 1.205
27 C 0.041 3.959
28 C -0.133 4.133
29 C -0.077 4.077
30 N -0.024 5.024
31 H 0.091 0.909
32 H 0.083 0.917
33 H 0.103 0.897
34 H 0.199 0.801
35 H 0.184 0.816
36 H 0.225 0.775
37 H 0.077 0.923
38 H 0.070 0.930
39 H 0.073 0.927
40 H 0.080 0.920
41 H 0.072 0.928
42 H 0.080 0.920
43 H 0.056 0.944
44 H 0.063 0.937
45 H 0.114 0.886
46 H 0.035 0.965
47 H 0.172 0.828
48 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges -16.977 5.874 -9.797 20.462
hybrid contribution -0.509 -0.287 0.415 0.716
sum -17.485 5.588 -9.382 20.615
Atomic orbital electron populations
1.20184 0.86396 1.03576 1.02767 1.21320 0.94843 0.85309 1.16756
1.22372 0.87861 0.98699 1.03089 1.70688 1.21790 1.06154 1.21051
1.20722 0.83575 0.90899 1.07845 1.20743 0.98435 0.89519 0.93701
1.20093 0.93676 0.93731 1.05076 1.17786 0.87964 0.82458 0.77484
1.90862 1.20412 1.79674 1.48716 1.45955 1.10249 1.05457 1.74570
1.22065 0.88355 0.86218 1.02242 0.89777 1.21682 0.98780 0.95565
0.99407 1.22051 0.97507 0.97261 0.99792 1.20487 0.95043 0.87956
0.90674 0.95772 1.21805 0.98436 0.97159 1.02008 1.44027 1.14315
1.07159 1.65147 1.19151 0.85632 1.24450 1.09037 0.91150 1.25073
0.96881 1.01456 0.95859 1.69984 1.27549 1.35483 1.21444 0.86322
0.84147 0.79068 0.77408 1.21257 1.21831 1.20462 1.21102 0.91565
0.94450 0.88832 1.20845 0.90928 1.00144 1.01338 1.21360 1.01222
0.80245 1.04835 1.42712 1.08886 1.05719 1.45105 0.90880 0.91665
0.89659 0.80132 0.81607 0.77525 0.92274 0.93041 0.92653 0.92012
0.92751 0.92015 0.94364 0.93717 0.88561 0.96519 0.82831 0.81711
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.39 10.30 36.00 0.37 -0.02 16
2 C -0.07 -0.67 7.02 -81.54 -0.57 -1.24 16
3 C 0.03 0.37 11.75 -17.96 -0.21 0.16 16
4 N -0.48 -7.03 11.31 -12.80 -0.14 -7.17 16
5 C 0.21 3.01 7.79 -155.97 -1.22 1.80 16
6 C 0.00 -0.04 9.70 -38.60 -0.37 -0.42 16
7 C -0.12 -1.61 5.90 -104.63 -0.62 -2.23 16
8 C 0.56 9.63 7.74 -12.42 -0.10 9.53 16
9 O -0.52 -11.48 16.03 5.29 0.08 -11.40 16
10 N -0.71 -11.00 5.04 -54.69 -0.28 -11.27 16
11 C 0.12 2.18 2.60 -67.81 -0.18 2.00 16
12 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16
13 C -0.12 -1.78 5.35 -26.69 -0.14 -1.92 16
14 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16
15 C 0.16 3.30 3.50 -67.60 -0.24 3.07 16
16 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
17 C -0.14 -2.52 7.94 37.16 0.30 -2.23 16
18 N -0.58 -14.31 2.99 -164.77 -0.49 -14.80 16
19 C -0.25 -6.89 8.61 -15.06 -0.13 -7.02 16
20 H 0.07 1.87 6.20 -52.49 -0.33 1.54 16
21 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16
22 N -0.90 -26.64 11.14 55.49 0.62 -26.02 16
23 Si 0.90 22.50 29.58 -169.99 -5.03 17.47 16
24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16
25 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16
26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
27 C 0.17 3.97 4.86 -3.71 -0.02 3.96 16
28 C -0.11 -1.09 9.48 -39.54 -0.37 -1.47 16
29 C 0.04 0.40 10.80 -16.68 -0.18 0.22 16
30 N -0.35 -4.04 2.94 -58.55 -0.17 -4.21 16
31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
32 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16
33 H 0.08 0.34 8.14 -51.92 -0.42 -0.09 16
34 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16
35 H 0.17 2.56 7.67 -52.49 -0.40 2.16 16
36 H 0.39 4.47 6.67 -40.82 -0.27 4.19 16
37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
38 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16
39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
41 H 0.05 1.03 7.40 -51.93 -0.38 0.64 16
42 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16
43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16
44 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16
45 H 0.10 2.73 6.06 -51.93 -0.31 2.41 16
46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
47 H 0.15 1.01 6.46 -52.49 -0.34 0.67 16
48 H 0.17 0.83 8.04 -52.48 -0.42 0.40 16
LS Contribution 385.53 15.07 5.81 5.81
Total: -1.00 -35.32 385.53 -10.55 -45.86
By element:
Atomic # 1 Polarization: 10.69 SS G_CDS: -7.04 Total: 3.65 kcal
Atomic # 6 Polarization: 5.98 SS G_CDS: -3.91 Total: 2.07 kcal
Atomic # 7 Polarization: -63.00 SS G_CDS: -0.47 Total: -63.47 kcal
Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal
Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -35.32 -10.55 -45.86 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071511317.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.189 kcal
(2) G-P(sol) polarization free energy of solvation -35.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.872 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.862 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.326 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds