Wall clock time and date at job start Sat Apr 11 2020 06:43:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.35455 * 126.38604 * 2 1
4 4 N 1.33184 * 108.61838 * 179.97438 * 3 2 1
5 5 C 1.32651 * 109.12642 * 359.97438 * 4 3 2
6 6 C 1.40650 * 132.14771 * 180.02562 * 5 4 3
7 7 C 1.38437 * 119.09152 * 179.97438 * 6 5 4
8 8 C 1.47645 * 120.37412 * 179.97438 * 7 6 5
9 9 O 1.21589 * 120.00324 * 359.97438 * 8 7 6
10 10 N 1.34783 * 120.00130 * 179.97438 * 8 7 6
11 11 C 1.46500 * 119.99996 * 179.97438 * 10 8 7
12 12 H 1.09000 * 109.50072 * 325.00439 * 11 10 8
13 13 C 1.53034 * 109.49899 * 204.93438 * 11 10 8
14 14 C 1.53042 * 109.54231 * 178.68419 * 13 11 10
15 15 C 1.53190 * 109.30763 * 61.36592 * 14 13 11
16 16 H 1.08996 * 109.59117 * 65.29703 * 15 14 13
17 17 C 1.53007 * 109.58622 * 185.57989 * 15 14 13
18 18 N 1.46928 * 108.77967 * 305.36704 * 15 14 13
19 19 C 1.36944 * 120.62869 * 233.61472 * 18 15 14
20 20 H 1.07998 * 120.00060 * 29.01987 * 19 18 15
21 21 C 1.38814 * 119.99435 * 209.01407 * 19 18 15
22 22 N 1.31614 * 120.00194 * 15.01826 * 21 19 18
23 23 Si 1.86798 * 119.99674 * 195.01852 * 21 19 18
24 24 H 1.48503 * 109.47462 * 89.99959 * 23 21 19
25 25 H 1.48506 * 109.47015 * 210.00231 * 23 21 19
26 26 H 1.48508 * 109.47186 * 329.99792 * 23 21 19
27 27 C 1.46935 * 118.76346 * 53.58657 * 18 15 14
28 28 C 1.41775 * 119.25165 * 359.97438 * 7 6 5
29 29 C 1.34537 * 120.14988 * 0.02562 * 28 7 6
30 30 N 1.36436 * 126.39367 * 179.68636 * 2 1 3
31 31 H 1.09001 * 109.47450 * 90.02483 * 1 2 3
32 32 H 1.09000 * 109.47070 * 210.02940 * 1 2 3
33 33 H 1.09007 * 109.47518 * 330.02244 * 1 2 3
34 34 H 1.07993 * 125.69116 * 0.02562 * 3 2 1
35 35 H 1.08002 * 120.45161 * 359.97438 * 6 5 4
36 36 H 0.96996 * 119.99736 * 359.97438 * 10 8 7
37 37 H 1.09001 * 109.46071 * 298.70925 * 13 11 10
38 38 H 1.09009 * 109.46002 * 58.67598 * 13 11 10
39 39 H 1.09000 * 109.49899 * 181.31500 * 14 13 11
40 40 H 1.09002 * 109.49780 * 301.41793 * 14 13 11
41 41 H 1.09003 * 109.47137 * 59.99528 * 17 15 14
42 42 H 1.08997 * 109.47275 * 180.02562 * 17 15 14
43 43 H 1.09004 * 109.47035 * 300.00235 * 17 15 14
44 44 H 0.96997 * 120.00059 * 180.02562 * 22 21 19
45 45 H 1.09000 * 109.61186 * 186.64713 * 27 18 15
46 46 H 1.08991 * 109.55814 * 66.21873 * 27 18 15
47 47 H 1.08000 * 119.92142 * 180.02562 * 28 7 6
48 48 H 1.08004 * 119.51986 * 180.02562 * 29 28 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3105 1.0905 0.0000
4 7 3.5788 0.6840 0.0006
5 6 3.6103 -0.6421 0.0015
6 6 4.6752 -1.5609 0.0028
7 6 4.3945 -2.9165 0.0041
8 6 5.4905 -3.9058 0.0050
9 8 6.6473 -3.5316 0.0041
10 7 5.2086 -5.2239 0.0067
11 6 6.2961 -6.2055 0.0070
12 1 7.1297 -5.8252 -0.5834
13 6 5.7983 -7.5195 -0.5992
14 6 6.9427 -8.5352 -0.6295
15 6 7.4133 -8.8109 0.8020
16 1 6.6152 -9.2986 1.3616
17 6 8.6458 -9.7170 0.7712
18 7 7.7571 -7.5334 1.4411
19 6 8.9841 -7.3514 2.0214
20 1 9.8433 -7.8885 1.6475
21 6 9.1236 -6.4765 3.0900
22 7 8.0584 -6.0508 3.7353
23 14 10.8231 -5.9034 3.6121
24 1 11.1765 -4.6646 2.8733
25 1 10.8258 -5.6274 5.0713
26 1 11.8182 -6.9627 3.3070
27 6 6.7600 -6.4541 1.4457
28 6 3.0428 -3.3441 0.0046
29 6 2.0476 -2.4388 0.0033
30 7 2.3165 -1.0982 0.0060
31 1 -0.3634 -0.0004 -1.0276
32 1 -0.3633 -0.8897 0.5143
33 1 -0.3634 0.8902 0.5135
34 1 1.9782 2.1180 0.0004
35 1 5.6978 -1.2136 0.0029
36 1 4.2858 -5.5224 0.0078
37 1 4.9806 -7.9116 0.0055
38 1 5.4453 -7.3401 -1.6148
39 1 6.5937 -9.4631 -1.0828
40 1 7.7706 -8.1333 -1.2136
41 1 9.4444 -9.2254 0.2155
42 1 8.9788 -9.9123 1.7905
43 1 8.3920 -10.6593 0.2854
44 1 8.1559 -5.4392 4.4818
45 1 7.2068 -5.5449 1.8479
46 1 5.9079 -6.7472 2.0589
47 1 2.8115 -4.3991 0.0060
48 1 1.0215 -2.7758 0.0041
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071511317.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:10
Heat of formation + Delta-G solvation = 51.113153 kcal
Electronic energy + Delta-G solvation = -29752.029857 eV
Core-core repulsion = 25807.741128 eV
Total energy + Delta-G solvation = -3944.288728 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-43.93360 -41.15476 -39.37262 -38.03617 -36.10568 -35.02376 -34.67182 -32.81250
-31.90305 -31.63234 -31.05230 -28.23510 -27.53024 -26.69249 -24.94219 -24.33059
-23.91228 -22.27660 -22.18201 -21.58779 -20.90656 -18.87206 -18.47349 -18.31299
-17.75166 -17.17412 -17.10972 -16.74934 -15.99447 -15.87218 -15.73608 -15.51760
-15.25132 -14.99251 -14.69271 -14.59766 -14.43460 -14.24512 -14.02354 -13.84765
-13.50295 -13.31649 -13.08458 -12.89140 -12.86507 -12.74455 -12.73739 -12.57202
-12.26830 -12.11740 -11.97417 -11.91142 -11.65620 -11.44378 -11.21150 -11.14826
-11.02673 -10.54382 -10.14777 -9.92028 -8.80586 -8.61841 -7.85454 -5.31046
-0.64897 0.00197 1.39157 1.44972 1.49691 1.50111 1.57132 1.89657
2.00712 2.49570 2.55849 3.15657 3.31156 3.38935 3.52058 3.66462
3.75057 3.91606 3.96977 4.06475 4.11625 4.26425 4.34075 4.35574
4.40932 4.48721 4.62167 4.72554 4.73247 4.81271 4.82451 4.90862
4.93718 5.02338 5.03066 5.09233 5.12410 5.20585 5.31107 5.34696
5.36052 5.45861 5.55948 5.56109 5.63195 5.71006 5.81636 5.99037
6.40735 6.54732 6.74635 7.15361 7.22402 7.91059 8.38842 9.19076
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.014816 B = 0.002776 C = 0.002459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1889.433413 B =10082.502274 C =11383.765926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C -0.048 4.048
3 C 0.012 3.988
4 N -0.519 5.519
5 C 0.179 3.821
6 C -0.029 4.029
7 C -0.118 4.118
8 C 0.553 3.447
9 O -0.582 6.582
10 N -0.693 5.693
11 C 0.130 3.870
12 H 0.050 0.950
13 C -0.107 4.107
14 C -0.119 4.119
15 C 0.153 3.847
16 H 0.025 0.975
17 C -0.131 4.131
18 N -0.603 5.603
19 C -0.247 4.247
20 H 0.075 0.925
21 C -0.054 4.054
22 N -0.933 5.933
23 Si 0.953 3.047
24 H -0.299 1.299
25 H -0.295 1.295
26 H -0.260 1.260
27 C 0.178 3.822
28 C -0.117 4.117
29 C 0.062 3.938
30 N -0.355 5.355
31 H 0.090 0.910
32 H 0.082 0.918
33 H 0.103 0.897
34 H 0.209 0.791
35 H 0.136 0.864
36 H 0.415 0.585
37 H 0.079 0.921
38 H 0.088 0.912
39 H 0.098 0.902
40 H 0.050 0.950
41 H 0.044 0.956
42 H 0.037 0.963
43 H 0.079 0.921
44 H 0.243 0.757
45 H 0.041 0.959
46 H 0.002 0.998
47 H 0.192 0.808
48 H 0.220 0.780
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.784 3.162 -11.879 25.888
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.163 4.163
3 C -0.141 4.141
4 N -0.240 5.240
5 C -0.062 4.062
6 C -0.050 4.050
7 C -0.127 4.127
8 C 0.341 3.659
9 O -0.463 6.463
10 N -0.345 5.345
11 C 0.024 3.976
12 H 0.069 0.931
13 C -0.144 4.144
14 C -0.158 4.158
15 C 0.048 3.952
16 H 0.043 0.957
17 C -0.188 4.188
18 N -0.328 5.328
19 C -0.378 4.378
20 H 0.092 0.908
21 C -0.249 4.249
22 N -0.579 5.579
23 Si 0.783 3.217
24 H -0.226 1.226
25 H -0.221 1.221
26 H -0.185 1.185
27 C 0.051 3.949
28 C -0.137 4.137
29 C -0.058 4.058
30 N -0.028 5.028
31 H 0.109 0.891
32 H 0.101 0.899
33 H 0.121 0.879
34 H 0.226 0.774
35 H 0.154 0.846
36 H 0.254 0.746
37 H 0.097 0.903
38 H 0.107 0.893
39 H 0.116 0.884
40 H 0.069 0.931
41 H 0.063 0.937
42 H 0.056 0.944
43 H 0.098 0.902
44 H 0.052 0.948
45 H 0.059 0.941
46 H 0.020 0.980
47 H 0.209 0.791
48 H 0.236 0.764
Dipole moment (debyes) X Y Z Total
from point charges -21.308 3.946 -11.736 24.644
hybrid contribution 0.722 0.340 0.978 1.263
sum -20.586 4.286 -10.758 23.619
Atomic orbital electron populations
1.20416 0.82534 1.05370 1.04392 1.22137 0.96747 0.84161 1.13254
1.23027 0.86945 1.00755 1.03341 1.70606 1.24285 1.06952 1.22114
1.20500 0.84740 0.90880 1.10045 1.20546 0.97808 0.90646 0.96032
1.19876 0.94675 0.92159 1.06039 1.18392 0.88038 0.83422 0.76058
1.90828 1.23279 1.80696 1.51460 1.45681 1.10889 1.04410 1.73537
1.21588 0.88805 0.88837 0.98341 0.93140 1.21658 0.98797 0.92530
1.01455 1.21962 0.97609 0.99452 0.96800 1.20820 0.95830 0.86010
0.92530 0.95716 1.21746 0.97500 0.98696 1.00851 1.44328 1.13640
1.09411 1.65383 1.19481 0.87178 1.23128 1.07988 0.90757 1.25764
0.99657 1.02700 0.96828 1.70139 1.29097 1.36588 1.22097 0.85461
0.81377 0.78377 0.76520 1.22638 1.22116 1.18474 1.20788 0.90439
0.92095 0.91589 1.21151 0.88626 1.02347 1.01618 1.22203 1.03300
0.78754 1.01524 1.42990 1.07947 1.07194 1.44708 0.89110 0.89907
0.87875 0.77415 0.84570 0.74621 0.90265 0.89321 0.88395 0.93119
0.93708 0.94417 0.90194 0.94786 0.94079 0.98002 0.79084 0.76384
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.41 10.30 71.23 0.73 0.33 16
2 C -0.05 -0.81 7.02 41.20 0.29 -0.52 16
3 C 0.01 0.25 11.75 83.84 0.99 1.24 16
4 N -0.52 -15.92 11.31 -194.41 -2.20 -18.12 16
5 C 0.18 5.31 7.79 133.97 1.04 6.36 16
6 C -0.03 -0.93 9.70 22.91 0.22 -0.71 16
7 C -0.12 -3.39 5.90 -19.87 -0.12 -3.51 16
8 C 0.55 20.20 7.74 86.73 0.67 20.87 16
9 O -0.58 -28.28 16.03 -4.00 -0.06 -28.34 16
10 N -0.69 -21.24 5.04 -445.21 -2.24 -23.48 16
11 C 0.13 4.91 2.60 45.07 0.12 5.03 16
12 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16
13 C -0.11 -2.90 5.35 30.62 0.16 -2.74 16
14 C -0.12 -3.52 5.37 30.67 0.16 -3.35 16
15 C 0.15 5.92 3.50 44.98 0.16 6.08 16
16 H 0.03 0.97 8.14 -2.39 -0.02 0.96 16
17 C -0.13 -4.62 7.94 71.98 0.57 -4.05 16
18 N -0.60 -30.29 2.99 -675.20 -2.02 -32.31 16
19 C -0.25 -13.90 8.61 84.03 0.72 -13.18 16
20 H 0.07 4.03 6.20 -2.91 -0.02 4.02 16
21 C -0.05 -3.22 4.96 84.86 0.42 -2.80 16
22 N -0.93 -58.41 11.14 21.65 0.24 -58.17 16
23 Si 0.95 48.41 29.58 68.60 2.03 50.44 16
24 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16
25 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16
26 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16
27 C 0.18 8.80 4.86 86.36 0.42 9.22 16
28 C -0.12 -1.99 9.48 22.30 0.21 -1.78 16
29 C 0.06 0.87 10.80 83.08 0.90 1.77 16
30 N -0.36 -7.45 2.94 -339.15 -1.00 -8.44 16
31 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16
32 H 0.08 0.26 8.12 -2.39 -0.02 0.24 16
33 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16
34 H 0.21 2.83 8.06 -2.91 -0.02 2.80 16
35 H 0.14 5.01 7.67 -2.91 -0.02 4.99 16
36 H 0.42 8.40 6.67 -92.71 -0.62 7.78 16
37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
38 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16
39 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16
40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16
41 H 0.04 1.64 7.40 -2.39 -0.02 1.63 16
42 H 0.04 1.48 7.66 -2.39 -0.02 1.46 16
43 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16
44 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16
45 H 0.04 2.49 6.06 -2.39 -0.01 2.48 16
46 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16
47 H 0.19 1.64 6.46 -2.91 -0.02 1.62 16
48 H 0.22 0.68 8.04 -2.91 -0.02 0.65 16
Total: -1.00 -88.25 385.53 2.79 -85.46
By element:
Atomic # 1 Polarization: 14.35 SS G_CDS: 0.36 Total: 14.72 kcal
Atomic # 6 Polarization: 10.57 SS G_CDS: 7.68 Total: 18.25 kcal
Atomic # 7 Polarization: -133.31 SS G_CDS: -7.22 Total: -140.52 kcal
Atomic # 8 Polarization: -28.28 SS G_CDS: -0.06 Total: -28.34 kcal
Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal
Total: -88.25 2.79 -85.46 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071511317.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.574 kcal
(2) G-P(sol) polarization free energy of solvation -88.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.325 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.113 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds