Wall clock time and date at job start Sat Apr 11 2020 06:41:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.37099 * 119.99554 * 2 1
4 4 H 1.08007 * 119.99985 * 184.60387 * 3 2 1
5 5 C 1.38949 * 120.00123 * 4.60791 * 3 2 1
6 6 N 1.31409 * 119.99948 * 5.37986 * 5 3 2
7 7 Si 1.86806 * 119.99991 * 185.37552 * 5 3 2
8 8 H 1.48500 * 109.47210 * 359.97438 * 7 5 3
9 9 H 1.48499 * 109.46962 * 120.00019 * 7 5 3
10 10 H 1.48502 * 109.46806 * 240.00016 * 7 5 3
11 11 C 1.34773 * 120.00220 * 180.02562 * 2 1 3
12 12 O 1.21288 * 120.00316 * 354.83415 * 11 2 1
13 13 C 1.50701 * 119.99690 * 174.55587 * 11 2 1
14 14 C 1.52994 * 109.46136 * 62.84660 * 13 11 2
15 15 C 1.53045 * 109.46104 * 302.87128 * 13 11 2
16 16 C 1.53193 * 109.31120 * 178.61477 * 15 13 11
17 17 N 1.46930 * 108.77635 * 54.63808 * 16 15 13
18 18 C 1.34773 * 120.63214 * 126.36857 * 17 16 15
19 19 O 1.21513 * 120.00237 * 180.02562 * 18 17 16
20 20 O 1.34641 * 119.99711 * 359.97438 * 18 17 16
21 21 C 1.45201 * 116.99860 * 179.97438 * 20 18 17
22 22 C 1.53008 * 109.46942 * 59.99960 * 21 20 18
23 23 C 1.52997 * 109.47287 * 180.02562 * 21 20 18
24 24 C 1.52999 * 109.47249 * 300.00589 * 21 20 18
25 25 C 1.46923 * 118.73615 * 306.39191 * 17 16 15
26 26 C 1.53040 * 109.45985 * 182.82117 * 13 11 2
27 27 H 1.09003 * 109.49440 * 301.33617 * 26 13 11
28 28 O 1.42901 * 109.50065 * 61.43117 * 26 13 11
29 29 H 1.09004 * 109.47029 * 174.83891 * 1 2 3
30 30 H 1.09002 * 109.47149 * 294.83589 * 1 2 3
31 31 H 1.08989 * 109.47697 * 54.83894 * 1 2 3
32 32 H 0.96999 * 120.00029 * 180.02562 * 6 5 3
33 33 H 1.09006 * 109.47105 * 65.51678 * 14 13 11
34 34 H 1.09007 * 109.47320 * 185.51538 * 14 13 11
35 35 H 1.08993 * 109.47105 * 305.51685 * 14 13 11
36 36 H 1.09002 * 109.49715 * 298.56530 * 15 13 11
37 37 H 1.08995 * 109.49479 * 58.66603 * 15 13 11
38 38 H 1.09004 * 109.58926 * 174.42122 * 16 15 13
39 39 H 1.08993 * 109.59012 * 294.85200 * 16 15 13
40 40 H 1.09001 * 109.46851 * 60.00646 * 22 21 20
41 41 H 1.09004 * 109.46942 * 179.97438 * 22 21 20
42 42 H 1.08995 * 109.47327 * 300.00134 * 22 21 20
43 43 H 1.08997 * 109.47314 * 59.99881 * 23 21 20
44 44 H 1.09000 * 109.47221 * 180.02562 * 23 21 20
45 45 H 1.09006 * 109.47135 * 299.99869 * 23 21 20
46 46 H 1.08995 * 109.47360 * 59.99658 * 24 21 20
47 47 H 1.09004 * 109.47043 * 180.02562 * 24 21 20
48 48 H 1.09004 * 109.46632 * 299.99260 * 24 21 20
49 49 H 1.09006 * 109.58699 * 173.39718 * 25 17 16
50 50 H 1.09006 * 109.58848 * 293.67280 * 25 17 16
51 51 H 0.96703 * 113.99975 * 180.02562 * 28 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1504 1.1874 0.0000
4 1 3.2278 1.1890 -0.0751
5 6 1.4589 2.3887 0.0967
6 7 0.1598 2.3850 0.2943
7 14 2.3762 4.0091 -0.0541
8 1 3.8207 3.7419 -0.2712
9 1 1.8363 4.7783 -1.2039
10 1 2.2007 4.7951 1.1935
11 6 2.1389 -1.1671 -0.0005
12 8 1.5362 -2.2155 0.0936
13 6 3.6408 -1.1699 -0.1243
14 6 4.2529 -0.4529 1.0806
15 6 4.0478 -0.4454 -1.4096
16 6 5.5759 -0.4200 -1.5146
17 7 6.0800 -1.7963 -1.4122
18 6 6.8977 -2.3002 -2.3576
19 8 7.3075 -3.4401 -2.2618
20 8 7.2597 -1.5408 -3.4089
21 6 8.1429 -2.1487 -4.3881
22 6 7.4675 -3.3843 -4.9866
23 6 8.4419 -1.1412 -5.5001
24 6 9.4505 -2.5610 -3.7090
25 6 5.6752 -2.6129 -0.2599
26 6 4.1460 -2.6138 -0.1692
27 1 3.8357 -3.1361 0.7358
28 8 3.6006 -3.2747 -1.3128
29 1 -0.3633 -1.0235 -0.0924
30 1 -0.3633 0.4316 0.9326
31 1 -0.3634 0.5917 -0.8400
32 1 -0.3230 3.2237 0.3614
33 1 4.0451 -1.0225 1.9865
34 1 5.3311 -0.3683 0.9440
35 1 3.8188 0.5428 1.1699
36 1 3.6327 -0.9702 -2.2701
37 1 3.6676 0.5758 -1.3875
38 1 5.8692 0.0061 -2.4741
39 1 5.9879 0.1812 -0.7042
40 1 6.5360 -3.0905 -5.4704
41 1 8.1304 -3.8403 -5.7220
42 1 7.2549 -4.1018 -4.1942
43 1 8.9232 -0.2613 -5.0734
44 1 9.1046 -1.5977 -6.2353
45 1 7.5105 -0.8472 -5.9840
46 1 9.2379 -3.2785 -2.9165
47 1 10.1137 -3.0169 -4.4441
48 1 9.9317 -1.6807 -3.2826
49 1 6.0341 -3.6338 -0.3914
50 1 6.0975 -2.1920 0.6527
51 1 3.8789 -4.1963 -1.4044
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001179055142.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:14
Heat of formation + Delta-G solvation = -129.515227 kcal
Electronic energy + Delta-G solvation = -33407.518357 eV
Core-core repulsion = 29115.795323 eV
Total energy + Delta-G solvation = -4291.723033 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.203 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.95771 -39.86590 -37.84262 -36.54478 -35.42467 -34.65412 -34.04839 -33.07899
-31.31577 -30.16006 -27.53051 -27.46882 -27.40916 -26.20998 -25.39421 -24.00883
-23.00203 -21.98138 -20.01165 -19.28270 -18.42170 -18.04498 -17.15075 -16.81579
-16.36001 -16.09953 -15.72946 -14.95078 -14.75200 -14.57048 -14.44036 -14.23590
-14.08194 -13.94492 -13.66754 -13.31441 -13.17171 -12.65489 -12.50831 -12.41834
-12.26472 -12.07298 -11.98376 -11.91497 -11.76992 -11.60696 -11.55167 -11.38671
-11.29873 -11.25760 -11.13102 -11.02869 -10.67243 -10.42362 -10.39429 -10.36032
-10.23894 -9.95628 -9.60127 -9.35540 -9.09897 -8.57326 -8.06154 -7.85397
-6.29582 -3.88850 2.22609 2.96248 3.05405 3.14628 3.17409 3.88651
3.94164 4.01636 4.62098 4.65613 4.66939 4.70935 4.80396 4.94811
5.05022 5.19310 5.24448 5.33361 5.41265 5.44842 5.51583 5.55945
5.64349 5.66277 5.67839 5.73070 5.75780 5.84825 5.86636 5.96338
6.03224 6.11175 6.18110 6.24705 6.33076 6.41298 6.50329 6.53499
6.68241 6.82093 6.92023 6.98493 7.28935 7.38023 7.50910 7.52593
7.76353 8.13855 8.38704 8.45065 9.05911 9.58350 9.98458 10.63577
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.014266 B = 0.003746 C = 0.003271
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1962.172431 B = 7473.016883 C = 8557.688391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.125 3.875
2 N -0.448 5.448
3 C -0.340 4.340
4 H 0.121 0.879
5 C 0.032 3.968
6 N -0.873 5.873
7 Si 0.918 3.082
8 H -0.267 1.267
9 H -0.280 1.280
10 H -0.281 1.281
11 C 0.467 3.533
12 O -0.600 6.600
13 C -0.047 4.047
14 C -0.164 4.164
15 C -0.135 4.135
16 C 0.111 3.889
17 N -0.581 5.581
18 C 0.656 3.344
19 O -0.580 6.580
20 O -0.361 6.361
21 C 0.136 3.864
22 C -0.182 4.182
23 C -0.141 4.141
24 C -0.182 4.182
25 C 0.094 3.906
26 C 0.120 3.880
27 H 0.069 0.931
28 O -0.539 6.539
29 H 0.032 0.968
30 H 0.066 0.934
31 H 0.057 0.943
32 H 0.265 0.735
33 H 0.052 0.948
34 H 0.053 0.947
35 H 0.103 0.897
36 H 0.072 0.928
37 H 0.114 0.886
38 H 0.089 0.911
39 H 0.072 0.928
40 H 0.060 0.940
41 H 0.066 0.934
42 H 0.088 0.912
43 H 0.066 0.934
44 H 0.078 0.922
45 H 0.067 0.933
46 H 0.087 0.913
47 H 0.067 0.933
48 H 0.058 0.942
49 H 0.094 0.906
50 H 0.080 0.920
51 H 0.365 0.635
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.510 -4.050 -5.835 17.059
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.018 4.018
2 N -0.166 5.166
3 C -0.467 4.467
4 H 0.138 0.862
5 C -0.172 4.172
6 N -0.512 5.512
7 Si 0.744 3.256
8 H -0.191 1.191
9 H -0.205 1.205
10 H -0.206 1.206
11 C 0.255 3.745
12 O -0.486 6.486
13 C -0.051 4.051
14 C -0.221 4.221
15 C -0.173 4.173
16 C -0.011 4.011
17 N -0.320 5.320
18 C 0.411 3.589
19 O -0.471 6.471
20 O -0.276 6.276
21 C 0.099 3.901
22 C -0.240 4.240
23 C -0.198 4.198
24 C -0.239 4.239
25 C -0.028 4.028
26 C 0.059 3.941
27 H 0.087 0.913
28 O -0.342 6.342
29 H 0.050 0.950
30 H 0.085 0.915
31 H 0.076 0.924
32 H 0.076 0.924
33 H 0.071 0.929
34 H 0.072 0.928
35 H 0.122 0.878
36 H 0.090 0.910
37 H 0.132 0.868
38 H 0.107 0.893
39 H 0.090 0.910
40 H 0.079 0.921
41 H 0.085 0.915
42 H 0.107 0.893
43 H 0.085 0.915
44 H 0.096 0.904
45 H 0.086 0.914
46 H 0.106 0.894
47 H 0.086 0.914
48 H 0.077 0.923
49 H 0.113 0.887
50 H 0.098 0.902
51 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges 14.900 -4.123 -5.898 16.547
hybrid contribution 0.602 0.465 0.014 0.761
sum 15.502 -3.657 -5.884 16.979
Atomic orbital electron populations
1.21478 0.79975 0.97239 1.03105 1.43617 1.06030 1.04591 1.62379
1.20212 0.93237 0.82916 1.50332 0.86173 1.25323 0.95721 0.99630
0.96485 1.70232 1.06881 1.26948 1.47150 0.85999 0.79520 0.81911
0.78133 1.19078 1.20550 1.20648 1.19564 0.88178 0.83753 0.83024
1.90521 1.69601 1.31661 1.56806 1.20336 0.94965 0.93080 0.96712
1.22319 0.99787 1.03967 0.96019 1.22238 0.93471 1.04226 0.97354
1.21900 0.95351 0.81054 1.02817 1.46846 1.47591 1.15261 1.22313
1.17906 0.78705 0.82683 0.79593 1.90838 1.59475 1.18111 1.78669
1.86312 1.63460 1.45089 1.32715 1.22011 0.88360 0.93395 0.86372
1.22504 1.00886 0.98197 1.02374 1.21852 1.02629 0.98808 0.96498
1.22506 0.95930 1.02886 1.02581 1.22537 0.96460 0.96669 0.87098
1.21869 0.89042 0.93578 0.89581 0.91336 1.86660 1.73390 1.27853
1.46261 0.94970 0.91531 0.92408 0.92361 0.92858 0.92798 0.87833
0.90965 0.86811 0.89291 0.90952 0.92113 0.91482 0.89329 0.91537
0.90368 0.91392 0.89387 0.91418 0.92336 0.88744 0.90227 0.78999
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 3.15 8.85 59.85 0.53 3.68 16
2 N -0.45 -11.12 3.02 -122.20 -0.37 -11.48 16
3 C -0.34 -7.97 6.79 -14.93 -0.10 -8.07 16
4 H 0.12 2.54 3.01 -52.48 -0.16 2.38 16
5 C 0.03 0.77 5.42 -17.47 -0.09 0.68 16
6 N -0.87 -22.06 9.52 55.50 0.53 -21.54 16
7 Si 0.92 18.32 29.56 -169.99 -5.02 13.30 16
8 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16
9 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16
10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16
11 C 0.47 11.16 6.31 -10.99 -0.07 11.10 16
12 O -0.60 -16.07 14.73 -10.95 -0.16 -16.23 16
13 C -0.05 -0.89 0.33 -155.62 -0.05 -0.94 16
14 C -0.16 -2.71 7.35 37.15 0.27 -2.43 16
15 C -0.14 -2.40 4.43 -26.61 -0.12 -2.51 16
16 C 0.11 1.61 5.98 -3.71 -0.02 1.59 16
17 N -0.58 -8.63 2.91 -178.56 -0.52 -9.15 16
18 C 0.66 10.13 7.74 54.05 0.42 10.54 16
19 O -0.58 -9.53 11.29 -19.28 -0.22 -9.75 16
20 O -0.36 -5.11 8.53 -40.33 -0.34 -5.45 16
21 C 0.14 1.55 1.13 -90.62 -0.10 1.45 16
22 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16
23 C -0.14 -1.23 8.85 37.16 0.33 -0.90 16
24 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16
25 C 0.09 1.33 5.61 -3.71 -0.02 1.31 16
26 C 0.12 2.03 2.30 -26.61 -0.06 1.97 16
27 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16
28 O -0.54 -9.95 11.57 -51.73 -0.60 -10.54 16
29 H 0.03 0.81 6.95 -51.93 -0.36 0.45 16
30 H 0.07 1.73 6.94 -51.93 -0.36 1.37 16
31 H 0.06 1.49 7.18 -51.94 -0.37 1.11 16
32 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16
33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
34 H 0.05 0.73 5.00 -51.92 -0.26 0.47 16
35 H 0.10 1.89 4.75 -51.93 -0.25 1.64 16
36 H 0.07 1.44 7.61 -51.93 -0.40 1.05 16
37 H 0.11 2.14 4.75 -51.93 -0.25 1.90 16
38 H 0.09 1.24 6.93 -51.93 -0.36 0.88 16
39 H 0.07 0.95 6.57 -51.93 -0.34 0.61 16
40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
42 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16
43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16
44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
45 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
46 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16
47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
49 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16
50 H 0.08 0.99 6.83 -51.93 -0.35 0.63 16
51 H 0.36 5.28 9.08 45.56 0.41 5.69 16
LS Contribution 376.12 15.07 5.67 5.67
Total: -1.00 -30.52 376.12 -6.46 -36.98
By element:
Atomic # 1 Polarization: 21.08 SS G_CDS: -6.95 Total: 14.13 kcal
Atomic # 6 Polarization: 12.54 SS G_CDS: 1.53 Total: 14.07 kcal
Atomic # 7 Polarization: -41.81 SS G_CDS: -0.36 Total: -42.17 kcal
Atomic # 8 Polarization: -40.65 SS G_CDS: -1.32 Total: -41.98 kcal
Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.30 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -30.52 -6.46 -36.98 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001179055142.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.536 kcal
(2) G-P(sol) polarization free energy of solvation -30.522 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.058 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.515 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds