Wall clock time and date at job start Sat Apr 11 2020 06:41:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.35449 * 126.39377 * 2 1
4 4 N 1.33187 * 108.62200 * 179.97438 * 3 2 1
5 5 C 1.32649 * 109.12532 * 0.02562 * 4 3 2
6 6 C 1.40656 * 132.14519 * 180.31631 * 5 4 3
7 7 C 1.38445 * 119.08422 * 180.18997 * 6 5 4
8 8 C 1.47648 * 120.36915 * 179.73363 * 7 6 5
9 9 O 1.21586 * 119.99802 * 50.29556 * 8 7 6
10 10 N 1.34772 * 120.00094 * 230.28804 * 8 7 6
11 11 C 1.46932 * 120.62983 * 356.19330 * 10 8 7
12 12 C 1.53190 * 108.89201 * 126.29548 * 11 10 8
13 13 C 1.53350 * 109.15189 * 54.57471 * 12 11 10
14 14 C 1.52999 * 109.41898 * 178.67089 * 13 12 11
15 15 N 1.46494 * 109.47581 * 295.12972 * 14 13 12
16 16 C 1.36939 * 120.00663 * 179.97438 * 15 14 13
17 17 H 1.08007 * 119.99417 * 0.02562 * 16 15 14
18 18 C 1.38808 * 120.00541 * 180.02562 * 16 15 14
19 19 N 1.31620 * 120.00145 * 180.02562 * 18 16 15
20 20 Si 1.86799 * 119.99784 * 0.02562 * 18 16 15
21 21 H 1.48500 * 109.47078 * 90.00188 * 20 18 16
22 22 H 1.48501 * 109.47147 * 209.99829 * 20 18 16
23 23 H 1.48499 * 109.47554 * 330.00209 * 20 18 16
24 24 C 1.53034 * 109.60873 * 298.71359 * 13 12 11
25 25 C 1.46931 * 120.63383 * 176.16532 * 10 8 7
26 26 C 1.41776 * 119.25704 * 359.46391 * 7 6 5
27 27 C 1.34548 * 120.14897 * 0.27486 * 26 7 6
28 28 N 1.36437 * 126.38633 * 180.02562 * 2 1 3
29 29 H 1.09005 * 109.47084 * 270.00244 * 1 2 3
30 30 H 1.09004 * 109.46622 * 29.99413 * 1 2 3
31 31 H 1.08993 * 109.47541 * 149.99408 * 1 2 3
32 32 H 1.08003 * 125.69146 * 359.97438 * 3 2 1
33 33 H 1.07988 * 120.46001 * 359.95305 * 6 5 4
34 34 H 1.08999 * 109.58450 * 246.14686 * 11 10 8
35 35 H 1.08994 * 109.58502 * 6.43316 * 11 10 8
36 36 H 1.09003 * 109.49819 * 174.65723 * 12 11 10
37 37 H 1.08998 * 109.49844 * 294.75348 * 12 11 10
38 38 H 1.09004 * 109.41928 * 58.75114 * 13 12 11
39 39 H 1.09009 * 109.47013 * 55.12905 * 14 13 12
40 40 H 1.08998 * 109.47229 * 175.12773 * 14 13 12
41 41 H 0.97010 * 119.99952 * 0.02562 * 15 14 13
42 42 H 0.97001 * 119.99883 * 180.02562 * 19 18 16
43 43 H 1.09006 * 109.49626 * 301.41792 * 24 13 12
44 44 H 1.09006 * 109.52438 * 181.34428 * 24 13 12
45 45 H 1.08999 * 109.57900 * 353.41966 * 25 10 8
46 46 H 1.08990 * 109.58549 * 113.70104 * 25 10 8
47 47 H 1.08001 * 119.92603 * 180.24979 * 26 7 6
48 48 H 1.07994 * 119.52370 * 179.97438 * 27 26 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3106 1.0903 0.0000
4 7 3.5789 0.6838 0.0006
5 6 3.6103 -0.6423 0.0004
6 6 4.6752 -1.5613 0.0065
7 6 4.3943 -2.9169 0.0004
8 6 5.4902 -3.9063 0.0007
9 8 6.3892 -3.8174 0.8144
10 7 5.4939 -4.9080 -0.9009
11 6 4.3733 -5.0778 -1.8360
12 6 4.9224 -5.1225 -3.2654
13 6 5.9940 -6.2155 -3.3587
14 6 6.5233 -6.2878 -4.7924
15 7 5.4475 -6.7176 -5.6891
16 6 5.6875 -6.8545 -7.0303
17 1 6.6702 -6.6459 -7.4270
18 6 4.6680 -7.2612 -7.8800
19 7 4.8989 -7.3932 -9.1690
20 14 2.9683 -7.6213 -7.1939
21 1 2.1531 -6.3802 -7.2144
22 1 2.3089 -8.6603 -8.0251
23 1 3.0915 -8.1096 -5.7969
24 6 7.1459 -5.8881 -2.4059
25 6 6.6189 -5.8508 -0.9680
26 6 3.0425 -3.3444 -0.0003
27 6 2.0473 -2.4389 -0.0006
28 7 2.3164 -1.0984 -0.0005
29 1 -0.3633 0.0000 1.0277
30 1 -0.3633 0.8901 -0.5138
31 1 -0.3634 -0.8898 -0.5139
32 1 1.9784 2.1180 -0.0004
33 1 5.6977 -1.2142 0.0120
34 1 3.8516 -6.0092 -1.6158
35 1 3.6835 -4.2399 -1.7355
36 1 4.1117 -5.3428 -3.9598
37 1 5.3644 -4.1580 -3.5156
38 1 5.5572 -7.1756 -3.0841
39 1 6.8798 -5.3041 -5.0982
40 1 7.3443 -7.0031 -4.8410
41 1 4.5648 -6.9046 -5.3329
42 1 4.1864 -7.6771 -9.7628
43 1 7.5670 -4.9165 -2.6645
44 1 7.9176 -6.6533 -2.4908
45 1 7.4120 -5.5214 -0.2966
46 1 6.2809 -6.8445 -0.6745
47 1 2.8110 -4.3993 -0.0009
48 1 1.0213 -2.7758 -0.0016
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001205285626.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:45
Heat of formation + Delta-G solvation = 70.480385 kcal
Electronic energy + Delta-G solvation = -29511.482131 eV
Core-core repulsion = 25568.033229 eV
Total energy + Delta-G solvation = -3943.448902 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-43.25172 -40.58916 -38.10400 -37.35097 -35.18806 -34.35771 -33.02297 -31.98716
-31.09963 -30.75659 -30.46120 -27.74907 -26.74917 -24.66778 -24.01167 -23.27058
-23.06377 -21.57443 -21.51843 -20.54390 -19.38651 -18.15227 -17.79049 -17.53265
-16.69499 -16.53138 -16.26301 -15.45474 -15.07287 -14.92377 -14.73100 -14.45219
-14.17512 -14.09213 -13.94877 -13.63300 -13.57150 -13.41740 -13.24913 -13.05337
-12.89814 -12.54133 -12.48716 -12.29815 -12.13375 -11.96905 -11.46154 -11.35330
-11.15075 -10.96636 -10.63005 -10.52795 -10.47138 -10.32109 -10.19756 -10.04951
-9.62083 -9.20099 -8.93735 -8.85670 -8.13594 -7.26516 -5.80191 -3.15691
0.17643 0.66453 2.12045 2.23249 2.46618 2.69759 3.14515 3.30880
3.32279 3.39887 3.78869 3.94698 4.15702 4.18928 4.47533 4.54303
4.56446 4.65893 4.77275 4.83415 4.86858 4.94484 5.01455 5.04168
5.09964 5.16883 5.23151 5.30152 5.38236 5.40332 5.51642 5.59929
5.60058 5.63128 5.66075 5.75486 5.83365 5.96682 6.00864 6.06238
6.20478 6.21582 6.29155 6.38878 6.60486 6.64623 6.75567 7.10501
7.45440 7.83284 7.96491 8.38906 9.17898 9.89966 10.09834 11.38476
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.011062 B = 0.002837 C = 0.002432
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2530.530459 B = 9866.153768 C =11508.433508
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.062 4.062
3 C 0.035 3.965
4 N -0.477 5.477
5 C 0.211 3.789
6 C -0.012 4.012
7 C -0.113 4.113
8 C 0.567 3.433
9 O -0.533 6.533
10 N -0.598 5.598
11 C 0.095 3.905
12 C -0.127 4.127
13 C -0.098 4.098
14 C 0.162 3.838
15 N -0.755 5.755
16 C -0.243 4.243
17 H 0.090 0.910
18 C 0.003 3.997
19 N -0.935 5.935
20 Si 0.884 3.116
21 H -0.284 1.284
22 H -0.291 1.291
23 H -0.277 1.277
24 C -0.126 4.126
25 C 0.113 3.887
26 C -0.118 4.118
27 C 0.053 3.947
28 N -0.353 5.353
29 H 0.074 0.926
30 H 0.086 0.914
31 H 0.066 0.934
32 H 0.183 0.817
33 H 0.160 0.840
34 H 0.074 0.926
35 H 0.089 0.911
36 H 0.082 0.918
37 H 0.069 0.931
38 H 0.072 0.928
39 H 0.027 0.973
40 H 0.028 0.972
41 H 0.360 0.640
42 H 0.259 0.741
43 H 0.069 0.931
44 H 0.080 0.920
45 H 0.093 0.907
46 H 0.070 0.930
47 H 0.158 0.842
48 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.799 10.840 23.320 27.180
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.176 4.176
3 C -0.119 4.119
4 N -0.196 5.196
5 C -0.030 4.030
6 C -0.033 4.033
7 C -0.123 4.123
8 C 0.355 3.645
9 O -0.410 6.410
10 N -0.331 5.331
11 C -0.027 4.027
12 C -0.166 4.166
13 C -0.117 4.117
14 C 0.035 3.965
15 N -0.401 5.401
16 C -0.373 4.373
17 H 0.107 0.893
18 C -0.193 4.193
19 N -0.583 5.583
20 Si 0.714 3.286
21 H -0.211 1.211
22 H -0.217 1.217
23 H -0.204 1.204
24 C -0.165 4.165
25 C -0.009 4.009
26 C -0.139 4.139
27 C -0.068 4.068
28 N -0.026 5.026
29 H 0.092 0.908
30 H 0.105 0.895
31 H 0.085 0.915
32 H 0.200 0.800
33 H 0.177 0.823
34 H 0.092 0.908
35 H 0.107 0.893
36 H 0.100 0.900
37 H 0.088 0.912
38 H 0.090 0.910
39 H 0.045 0.955
40 H 0.046 0.954
41 H 0.192 0.808
42 H 0.069 0.931
43 H 0.087 0.913
44 H 0.098 0.902
45 H 0.111 0.889
46 H 0.089 0.911
47 H 0.175 0.825
48 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges -7.547 11.380 23.521 27.197
hybrid contribution -2.083 -0.886 0.125 2.267
sum -9.630 10.494 23.647 27.605
Atomic orbital electron populations
1.20216 0.86237 1.03796 1.02892 1.21370 0.94945 0.85203 1.16113
1.22397 0.87764 0.98796 1.02896 1.70685 1.21896 1.06042 1.20960
1.20639 0.83549 0.90908 1.07938 1.20515 0.98160 0.89150 0.95455
1.19821 0.93829 0.93476 1.05128 1.17943 0.85026 0.80559 0.81015
1.90819 1.37478 1.74472 1.38240 1.48049 1.21781 1.29103 1.34119
1.22169 0.88409 1.02477 0.89655 1.22007 0.99775 1.00105 0.94669
1.21423 0.95406 0.98462 0.96412 1.20649 0.91397 0.97557 0.86893
1.42720 1.09028 1.83116 1.05250 1.19072 0.98242 1.38317 0.81678
0.89261 1.24682 0.97684 1.01656 0.95245 1.69701 1.32542 1.53759
1.02261 0.86554 0.85948 0.77960 0.78111 1.21104 1.21706 1.20367
1.21908 0.98238 1.02932 0.93380 1.21699 0.88909 0.92208 0.98067
1.20839 0.90461 1.00463 1.02130 1.21417 1.01338 0.80241 1.03852
1.42709 1.08893 1.05704 1.45295 0.90768 0.89483 0.91532 0.79986
0.82284 0.90825 0.89288 0.89970 0.91225 0.90952 0.95514 0.95447
0.80753 0.93052 0.91251 0.90184 0.88898 0.91149 0.82460 0.81489
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.34 10.30 36.00 0.37 0.03 16
2 C -0.06 -0.53 7.02 -81.54 -0.57 -1.10 16
3 C 0.03 0.34 11.75 -17.96 -0.21 0.13 16
4 N -0.48 -6.11 11.31 -12.80 -0.14 -6.25 16
5 C 0.21 2.54 7.79 -155.96 -1.22 1.33 16
6 C -0.01 -0.14 9.85 -38.59 -0.38 -0.52 16
7 C -0.11 -1.19 5.02 -104.63 -0.52 -1.72 16
8 C 0.57 6.91 7.25 -12.42 -0.09 6.82 16
9 O -0.53 -8.17 16.47 5.29 0.09 -8.09 16
10 N -0.60 -6.49 2.97 -173.96 -0.52 -7.00 16
11 C 0.10 0.92 5.38 -3.71 -0.02 0.90 16
12 C -0.13 -1.61 5.27 -26.45 -0.14 -1.75 16
13 C -0.10 -1.33 2.19 -90.42 -0.20 -1.53 16
14 C 0.16 2.96 5.65 -4.05 -0.02 2.94 16
15 N -0.76 -17.22 5.12 -59.91 -0.31 -17.52 16
16 C -0.24 -6.78 10.47 -15.06 -0.16 -6.94 16
17 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16
18 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16
19 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16
20 Si 0.88 21.42 27.74 -169.99 -4.71 16.70 16
21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
23 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16
24 C -0.13 -1.43 5.36 -26.62 -0.14 -1.57 16
25 C 0.11 1.19 6.42 -3.71 -0.02 1.17 16
26 C -0.12 -0.91 7.32 -39.54 -0.29 -1.20 16
27 C 0.05 0.38 10.80 -16.67 -0.18 0.20 16
28 N -0.35 -3.45 2.94 -58.54 -0.17 -3.63 16
29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16
31 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16
32 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16
33 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16
34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
35 H 0.09 0.76 4.53 -51.93 -0.23 0.53 16
36 H 0.08 1.15 7.16 -51.93 -0.37 0.77 16
37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
39 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16
40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16
41 H 0.36 7.85 4.71 -40.82 -0.19 7.66 16
42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16
43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
45 H 0.09 1.04 7.02 -51.93 -0.36 0.68 16
46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
47 H 0.16 0.85 7.09 -52.49 -0.37 0.48 16
48 H 0.17 0.64 8.04 -52.49 -0.42 0.22 16
LS Contribution 385.19 15.07 5.80 5.80
Total: -1.00 -35.97 385.19 -10.13 -46.09
By element:
Atomic # 1 Polarization: 12.14 SS G_CDS: -7.04 Total: 5.09 kcal
Atomic # 6 Polarization: 1.08 SS G_CDS: -3.89 Total: -2.82 kcal
Atomic # 7 Polarization: -62.42 SS G_CDS: -0.37 Total: -62.79 kcal
Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.09 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.70 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -35.97 -10.13 -46.09 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205285626.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.574 kcal
(2) G-P(sol) polarization free energy of solvation -35.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.607 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.094 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.480 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds