Wall clock time and date at job start Sat Apr 11 2020 06:41:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.35449 * 126.39377 * 2 1
4 4 N 1.33187 * 108.62200 * 179.97438 * 3 2 1
5 5 C 1.32649 * 109.12532 * 0.02562 * 4 3 2
6 6 C 1.40656 * 132.14519 * 180.31631 * 5 4 3
7 7 C 1.38445 * 119.08422 * 180.18997 * 6 5 4
8 8 C 1.47648 * 120.36915 * 179.73363 * 7 6 5
9 9 O 1.21586 * 119.99802 * 50.29556 * 8 7 6
10 10 N 1.34772 * 120.00094 * 230.28804 * 8 7 6
11 11 C 1.46932 * 120.62983 * 356.19330 * 10 8 7
12 12 C 1.53190 * 108.89201 * 126.29548 * 11 10 8
13 13 C 1.53350 * 109.15189 * 54.57471 * 12 11 10
14 14 C 1.52999 * 109.41898 * 178.67089 * 13 12 11
15 15 N 1.46494 * 109.47581 * 295.12972 * 14 13 12
16 16 C 1.36939 * 120.00663 * 179.97438 * 15 14 13
17 17 H 1.08007 * 119.99417 * 0.02562 * 16 15 14
18 18 C 1.38808 * 120.00541 * 180.02562 * 16 15 14
19 19 N 1.31620 * 120.00145 * 180.02562 * 18 16 15
20 20 Si 1.86799 * 119.99784 * 0.02562 * 18 16 15
21 21 H 1.48500 * 109.47078 * 90.00188 * 20 18 16
22 22 H 1.48501 * 109.47147 * 209.99829 * 20 18 16
23 23 H 1.48499 * 109.47554 * 330.00209 * 20 18 16
24 24 C 1.53034 * 109.60873 * 298.71359 * 13 12 11
25 25 C 1.46931 * 120.63383 * 176.16532 * 10 8 7
26 26 C 1.41776 * 119.25704 * 359.46391 * 7 6 5
27 27 C 1.34548 * 120.14897 * 0.27486 * 26 7 6
28 28 N 1.36437 * 126.38633 * 180.02562 * 2 1 3
29 29 H 1.09005 * 109.47084 * 270.00244 * 1 2 3
30 30 H 1.09004 * 109.46622 * 29.99413 * 1 2 3
31 31 H 1.08993 * 109.47541 * 149.99408 * 1 2 3
32 32 H 1.08003 * 125.69146 * 359.97438 * 3 2 1
33 33 H 1.07988 * 120.46001 * 359.95305 * 6 5 4
34 34 H 1.08999 * 109.58450 * 246.14686 * 11 10 8
35 35 H 1.08994 * 109.58502 * 6.43316 * 11 10 8
36 36 H 1.09003 * 109.49819 * 174.65723 * 12 11 10
37 37 H 1.08998 * 109.49844 * 294.75348 * 12 11 10
38 38 H 1.09004 * 109.41928 * 58.75114 * 13 12 11
39 39 H 1.09009 * 109.47013 * 55.12905 * 14 13 12
40 40 H 1.08998 * 109.47229 * 175.12773 * 14 13 12
41 41 H 0.97010 * 119.99952 * 0.02562 * 15 14 13
42 42 H 0.97001 * 119.99883 * 180.02562 * 19 18 16
43 43 H 1.09006 * 109.49626 * 301.41792 * 24 13 12
44 44 H 1.09006 * 109.52438 * 181.34428 * 24 13 12
45 45 H 1.08999 * 109.57900 * 353.41966 * 25 10 8
46 46 H 1.08990 * 109.58549 * 113.70104 * 25 10 8
47 47 H 1.08001 * 119.92603 * 180.24979 * 26 7 6
48 48 H 1.07994 * 119.52370 * 179.97438 * 27 26 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3106 1.0903 0.0000
4 7 3.5789 0.6838 0.0006
5 6 3.6103 -0.6423 0.0004
6 6 4.6752 -1.5613 0.0065
7 6 4.3943 -2.9169 0.0004
8 6 5.4902 -3.9063 0.0007
9 8 6.3892 -3.8174 0.8144
10 7 5.4939 -4.9080 -0.9009
11 6 4.3733 -5.0778 -1.8360
12 6 4.9224 -5.1225 -3.2654
13 6 5.9940 -6.2155 -3.3587
14 6 6.5233 -6.2878 -4.7924
15 7 5.4475 -6.7176 -5.6891
16 6 5.6875 -6.8545 -7.0303
17 1 6.6702 -6.6459 -7.4270
18 6 4.6680 -7.2612 -7.8800
19 7 4.8989 -7.3932 -9.1690
20 14 2.9683 -7.6213 -7.1939
21 1 2.1531 -6.3802 -7.2144
22 1 2.3089 -8.6603 -8.0251
23 1 3.0915 -8.1096 -5.7969
24 6 7.1459 -5.8881 -2.4059
25 6 6.6189 -5.8508 -0.9680
26 6 3.0425 -3.3444 -0.0003
27 6 2.0473 -2.4389 -0.0006
28 7 2.3164 -1.0984 -0.0005
29 1 -0.3633 0.0000 1.0277
30 1 -0.3633 0.8901 -0.5138
31 1 -0.3634 -0.8898 -0.5139
32 1 1.9784 2.1180 -0.0004
33 1 5.6977 -1.2142 0.0120
34 1 3.8516 -6.0092 -1.6158
35 1 3.6835 -4.2399 -1.7355
36 1 4.1117 -5.3428 -3.9598
37 1 5.3644 -4.1580 -3.5156
38 1 5.5572 -7.1756 -3.0841
39 1 6.8798 -5.3041 -5.0982
40 1 7.3443 -7.0031 -4.8410
41 1 4.5648 -6.9046 -5.3329
42 1 4.1864 -7.6771 -9.7628
43 1 7.5670 -4.9165 -2.6645
44 1 7.9176 -6.6533 -2.4908
45 1 7.4120 -5.5214 -0.2966
46 1 6.2809 -6.8445 -0.6745
47 1 2.8110 -4.3993 -0.0009
48 1 1.0213 -2.7758 -0.0016
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001205285626.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:44
Heat of formation + Delta-G solvation = 47.935042 kcal
Electronic energy + Delta-G solvation = -29512.459771 eV
Core-core repulsion = 25568.033229 eV
Total energy + Delta-G solvation = -3944.426541 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-43.93884 -41.49708 -39.13763 -38.12984 -36.71639 -35.08618 -34.51344 -33.03284
-32.34799 -31.84007 -31.12925 -28.82928 -27.69128 -25.72099 -24.95308 -24.36684
-24.03859 -22.92695 -22.19138 -21.66204 -20.34666 -19.65258 -18.81473 -18.47015
-17.43852 -17.33086 -17.05247 -16.62173 -16.28362 -16.01405 -15.74617 -15.59510
-15.48618 -15.04219 -14.75041 -14.65789 -14.50365 -14.30947 -14.16213 -13.94126
-13.80681 -13.68025 -13.35782 -13.29445 -13.13123 -12.91685 -12.80835 -12.77156
-12.24025 -12.17015 -11.92139 -11.87652 -11.69586 -11.56324 -11.41080 -11.21393
-11.04307 -10.93814 -9.88032 -9.77128 -9.28713 -8.80686 -8.01775 -5.35975
-0.55585 0.00566 1.37783 1.38767 1.44247 1.50585 1.51859 1.73831
1.88667 2.37725 2.50520 3.03839 3.29459 3.33222 3.46968 3.56048
3.64019 3.75868 3.85085 3.89075 4.01130 4.06232 4.15092 4.28335
4.33159 4.36251 4.42964 4.48435 4.54218 4.68292 4.69525 4.78087
4.78924 4.83158 4.89228 4.91759 5.01337 5.02195 5.08310 5.10627
5.12363 5.23274 5.35573 5.47748 5.51922 5.56409 5.76165 5.98497
6.21673 6.22713 6.74588 6.92433 7.09374 7.84372 8.06149 9.20167
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.011062 B = 0.002837 C = 0.002432
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2530.530459 B = 9866.153768 C =11508.433508
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C -0.052 4.052
3 C 0.012 3.988
4 N -0.520 5.520
5 C 0.184 3.816
6 C -0.038 4.038
7 C -0.111 4.111
8 C 0.567 3.433
9 O -0.573 6.573
10 N -0.594 5.594
11 C 0.100 3.900
12 C -0.127 4.127
13 C -0.087 4.087
14 C 0.159 3.841
15 N -0.753 5.753
16 C -0.238 4.238
17 H 0.048 0.952
18 C -0.069 4.069
19 N -0.988 5.988
20 Si 0.960 3.040
21 H -0.275 1.275
22 H -0.298 1.298
23 H -0.241 1.241
24 C -0.119 4.119
25 C 0.115 3.885
26 C -0.123 4.123
27 C 0.062 3.938
28 N -0.358 5.358
29 H 0.088 0.912
30 H 0.101 0.899
31 H 0.080 0.920
32 H 0.205 0.795
33 H 0.144 0.856
34 H 0.104 0.896
35 H 0.104 0.896
36 H 0.075 0.925
37 H 0.052 0.948
38 H 0.086 0.914
39 H 0.013 0.987
40 H 0.022 0.978
41 H 0.369 0.631
42 H 0.258 0.742
43 H 0.055 0.945
44 H 0.091 0.909
45 H 0.084 0.916
46 H 0.094 0.906
47 H 0.190 0.810
48 H 0.212 0.788
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.728 9.721 25.656 30.245
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.167 4.167
3 C -0.141 4.141
4 N -0.240 5.240
5 C -0.057 4.057
6 C -0.059 4.059
7 C -0.120 4.120
8 C 0.355 3.645
9 O -0.453 6.453
10 N -0.325 5.325
11 C -0.021 4.021
12 C -0.165 4.165
13 C -0.105 4.105
14 C 0.032 3.968
15 N -0.400 5.400
16 C -0.369 4.369
17 H 0.067 0.933
18 C -0.260 4.260
19 N -0.639 5.639
20 Si 0.786 3.214
21 H -0.200 1.200
22 H -0.225 1.225
23 H -0.165 1.165
24 C -0.157 4.157
25 C -0.006 4.006
26 C -0.143 4.143
27 C -0.058 4.058
28 N -0.031 5.031
29 H 0.107 0.893
30 H 0.119 0.881
31 H 0.099 0.901
32 H 0.222 0.778
33 H 0.162 0.838
34 H 0.122 0.878
35 H 0.122 0.878
36 H 0.093 0.907
37 H 0.071 0.929
38 H 0.104 0.896
39 H 0.031 0.969
40 H 0.040 0.960
41 H 0.203 0.797
42 H 0.067 0.933
43 H 0.074 0.926
44 H 0.109 0.891
45 H 0.102 0.898
46 H 0.112 0.888
47 H 0.207 0.793
48 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges -11.467 10.266 25.897 30.126
hybrid contribution -0.751 -0.466 -0.662 1.104
sum -12.218 9.800 25.235 29.701
Atomic orbital electron populations
1.20393 0.83023 1.05239 1.04209 1.22048 0.96600 0.84370 1.13667
1.22955 0.87146 1.00578 1.03371 1.70605 1.23959 1.07059 1.22384
1.20639 0.84759 0.90910 1.09392 1.20439 0.97759 0.90013 0.97683
1.19812 0.94886 0.92427 1.04887 1.18194 0.84873 0.80706 0.80685
1.90799 1.39060 1.75390 1.40026 1.48112 1.22137 1.28571 1.33684
1.22274 0.87975 1.04744 0.87116 1.21967 0.99104 0.98750 0.96721
1.21317 0.96335 0.99663 0.93224 1.20802 0.90448 0.96277 0.89235
1.42648 1.10540 1.83019 1.03759 1.19028 0.96609 1.37128 0.84146
0.93343 1.25633 1.02851 1.02112 0.95446 1.69914 1.34127 1.55613
1.04211 0.85336 0.79312 0.77800 0.78945 1.20049 1.22496 1.16526
1.21833 0.97757 1.02601 0.93532 1.21711 0.88868 0.93204 0.96854
1.21152 0.88858 1.02166 1.02141 1.22165 1.03270 0.78949 1.01434
1.42956 1.08155 1.06992 1.45019 0.89335 0.88061 0.90079 0.77780
0.83845 0.87787 0.87757 0.90678 0.92896 0.89559 0.96888 0.95965
0.79696 0.93349 0.92568 0.89099 0.89770 0.88803 0.79335 0.77145
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.37 10.30 71.23 0.73 0.36 16
2 C -0.05 -0.78 7.02 41.20 0.29 -0.49 16
3 C 0.01 0.22 11.75 83.84 0.99 1.20 16
4 N -0.52 -13.78 11.31 -194.40 -2.20 -15.98 16
5 C 0.18 4.49 7.79 133.97 1.04 5.54 16
6 C -0.04 -0.90 9.85 22.91 0.23 -0.68 16
7 C -0.11 -2.22 5.02 -19.87 -0.10 -2.32 16
8 C 0.57 13.28 7.25 86.73 0.63 13.91 16
9 O -0.57 -17.74 16.47 -3.99 -0.07 -17.81 16
10 N -0.59 -11.48 2.97 -822.54 -2.45 -13.93 16
11 C 0.10 1.56 5.38 86.36 0.46 2.03 16
12 C -0.13 -2.90 5.27 30.77 0.16 -2.73 16
13 C -0.09 -2.15 2.19 -10.67 -0.02 -2.17 16
14 C 0.16 5.71 5.65 86.38 0.49 6.20 16
15 N -0.75 -33.54 5.12 -343.45 -1.76 -35.30 16
16 C -0.24 -13.49 10.47 84.03 0.88 -12.61 16
17 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16
18 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16
19 N -0.99 -63.23 13.97 21.65 0.30 -62.93 16
20 Si 0.96 43.20 27.74 68.60 1.90 45.11 16
21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16
23 H -0.24 -9.33 6.52 99.48 0.65 -8.68 16
24 C -0.12 -2.50 5.36 30.67 0.16 -2.34 16
25 C 0.12 2.17 6.42 86.36 0.55 2.73 16
26 C -0.12 -1.48 7.32 22.30 0.16 -1.31 16
27 C 0.06 0.67 10.80 83.08 0.90 1.56 16
28 N -0.36 -6.28 2.94 -339.14 -1.00 -7.28 16
29 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16
30 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16
31 H 0.08 0.23 8.12 -2.39 -0.02 0.21 16
32 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16
33 H 0.14 3.64 8.06 -2.92 -0.02 3.61 16
34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16
35 H 0.10 1.36 4.53 -2.39 -0.01 1.35 16
36 H 0.07 1.85 7.16 -2.39 -0.02 1.84 16
37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16
38 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16
39 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16
40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16
41 H 0.37 15.01 4.71 -92.70 -0.44 14.57 16
42 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16
43 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16
44 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16
45 H 0.08 1.80 7.02 -2.39 -0.02 1.78 16
46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
47 H 0.19 1.02 7.09 -2.91 -0.02 1.00 16
48 H 0.21 0.33 8.04 -2.91 -0.02 0.30 16
Total: -1.00 -83.30 385.19 3.25 -80.06
By element:
Atomic # 1 Polarization: 22.27 SS G_CDS: 0.48 Total: 22.75 kcal
Atomic # 6 Polarization: -2.73 SS G_CDS: 8.03 Total: 5.30 kcal
Atomic # 7 Polarization: -128.31 SS G_CDS: -7.10 Total: -135.41 kcal
Atomic # 8 Polarization: -17.74 SS G_CDS: -0.07 Total: -17.81 kcal
Atomic # 14 Polarization: 43.20 SS G_CDS: 1.90 Total: 45.11 kcal
Total: -83.30 3.25 -80.06 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205285626.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.994 kcal
(2) G-P(sol) polarization free energy of solvation -83.305 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.689 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.935 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds