Wall clock time and date at job start Sat Apr 11 2020 06:43:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.40389 * 120.21994 * 2 1
4 4 C 1.35031 * 120.44027 * 179.97438 * 3 2 1
5 5 N 1.36527 * 120.59651 * 0.02900 * 4 3 2
6 6 C 1.36249 * 132.77930 * 180.02562 * 5 4 3
7 7 N 1.30187 * 109.81995 * 179.71729 * 6 5 4
8 8 C 1.34891 * 109.73400 * 0.41653 * 7 6 5
9 9 C 1.46279 * 126.49928 * 179.85333 * 8 7 6
10 10 O 1.21773 * 120.00234 * 179.68690 * 9 8 7
11 11 N 1.34786 * 119.99767 * 359.96119 * 9 8 7
12 12 C 1.46497 * 119.99732 * 179.72398 * 11 9 8
13 13 H 1.08997 * 110.01656 * 325.06197 * 12 11 9
14 14 C 1.53877 * 110.03400 * 86.45721 * 12 11 9
15 15 C 1.54264 * 106.59718 * 119.28271 * 14 12 11
16 16 C 1.54885 * 104.20032 * 23.60997 * 15 14 12
17 17 C 1.54270 * 110.03118 * 203.62217 * 12 11 9
18 18 H 1.09001 * 110.48497 * 335.78805 * 17 12 11
19 19 C 1.53006 * 110.48539 * 98.42446 * 17 12 11
20 20 N 1.46498 * 109.46872 * 185.00030 * 19 17 12
21 21 C 1.36936 * 119.99975 * 180.02562 * 20 19 17
22 22 H 1.08005 * 119.99918 * 359.97438 * 21 20 19
23 23 C 1.38811 * 120.00347 * 180.02562 * 21 20 19
24 24 N 1.31620 * 119.99573 * 359.97438 * 23 21 20
25 25 Si 1.86796 * 120.00300 * 179.97438 * 23 21 20
26 26 H 1.48504 * 109.47444 * 89.99293 * 25 23 21
27 27 H 1.48497 * 109.47195 * 209.99642 * 25 23 21
28 28 H 1.48502 * 109.46790 * 329.99485 * 25 23 21
29 29 C 1.37271 * 120.03736 * 359.97029 * 5 4 3
30 30 C 1.36331 * 120.22178 * 179.97438 * 2 1 3
31 31 H 1.08996 * 109.46750 * 89.99652 * 1 2 3
32 32 H 1.08996 * 109.47420 * 210.00365 * 1 2 3
33 33 H 1.09002 * 109.47063 * 330.00149 * 1 2 3
34 34 H 1.08000 * 119.78189 * 0.02562 * 3 2 1
35 35 H 1.08002 * 119.69862 * 179.97438 * 4 3 2
36 36 H 1.08002 * 125.09283 * 359.97090 * 6 5 4
37 37 H 0.97000 * 119.99685 * 359.72823 * 11 9 8
38 38 H 1.09000 * 110.03013 * 238.56721 * 14 12 11
39 39 H 1.08999 * 110.02619 * 359.95040 * 14 12 11
40 40 H 1.08999 * 110.48268 * 142.29285 * 15 14 12
41 41 H 1.09004 * 110.48526 * 264.92921 * 15 14 12
42 42 H 1.09001 * 110.75720 * 80.36715 * 16 15 14
43 43 H 1.08997 * 110.75954 * 203.55695 * 16 15 14
44 44 H 1.08992 * 109.47199 * 305.00495 * 19 17 12
45 45 H 1.09005 * 109.46518 * 65.00413 * 19 17 12
46 46 H 0.97006 * 120.00330 * 0.02562 * 20 19 17
47 47 H 0.97008 * 119.99917 * 180.02562 * 24 23 21
48 48 H 1.08004 * 120.39455 * 0.02562 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2136 1.2131 0.0000
4 6 3.5639 1.2183 0.0005
5 7 4.2634 0.0458 0.0005
6 6 5.5963 -0.2366 0.0013
7 7 5.7742 -1.5263 0.0069
8 6 4.5788 -2.1510 0.0006
9 6 4.3523 -3.5962 0.0009
10 8 3.2162 -4.0345 0.0005
11 7 5.4012 -4.4427 0.0070
12 6 5.1743 -5.8900 0.0133
13 1 4.2859 -6.1258 0.5991
14 6 5.0074 -6.4037 -1.4275
15 6 6.1407 -7.4228 -1.6660
16 6 6.5210 -7.9076 -0.2450
17 6 6.4032 -6.6149 0.6001
18 1 7.2976 -6.0022 0.4868
19 6 6.1702 -6.9573 2.0730
20 7 7.3914 -7.5357 2.6389
21 6 7.4210 -7.9225 3.9522
22 1 6.5441 -7.8007 4.5709
23 6 8.5782 -8.4701 4.4886
24 7 9.6469 -8.6181 3.7348
25 14 8.6187 -8.9971 6.2803
26 1 8.1938 -10.4159 6.3888
27 1 9.9992 -8.8521 6.8078
28 1 7.6952 -8.1421 7.0686
29 6 3.5948 -1.1531 0.0005
30 6 2.1932 -1.1780 0.0005
31 1 -0.3633 0.0001 -1.0276
32 1 -0.3634 -0.8899 0.5139
33 1 -0.3633 0.8900 0.5138
34 1 1.6737 2.1484 0.0004
35 1 4.0954 2.1585 0.0001
36 1 6.3868 0.4992 0.0019
37 1 6.3062 -4.0935 0.0073
38 1 4.0383 -6.8896 -1.5407
39 1 5.0944 -5.5760 -2.1313
40 1 5.7831 -8.2563 -2.2705
41 1 6.9927 -6.9406 -2.1454
42 1 5.8188 -8.6638 0.1060
43 1 7.5408 -8.2920 -0.2280
44 1 5.9101 -6.0511 2.6199
45 1 5.3557 -7.6771 2.1541
46 1 8.1791 -7.6448 2.0834
47 1 10.4556 -9.0011 4.1095
48 1 1.6633 -2.1191 0.0005
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001667734838.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:21
Heat of formation + Delta-G solvation = 47.222811 kcal
Electronic energy + Delta-G solvation = -29044.015229 eV
Core-core repulsion = 25099.557802 eV
Total energy + Delta-G solvation = -3944.457426 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-43.12060 -39.68485 -38.21018 -37.64461 -34.37727 -34.35066 -33.31388 -31.52259
-31.31113 -30.06715 -28.51032 -27.94178 -26.70135 -24.53264 -24.05166 -23.11931
-22.32983 -21.92404 -20.69692 -19.83527 -19.56679 -18.32782 -17.16565 -16.95261
-16.47691 -16.34380 -16.18259 -15.59883 -14.99851 -14.79967 -14.60570 -14.48592
-14.15720 -14.08226 -13.86240 -13.55878 -13.18517 -13.09968 -12.94913 -12.73986
-12.46293 -12.05970 -11.99090 -11.96678 -11.59716 -11.24684 -10.87281 -10.75962
-10.73943 -10.71646 -10.67389 -10.35108 -10.26605 -10.21857 -9.92641 -9.84433
-9.72098 -9.61946 -8.80855 -8.78508 -7.77905 -6.82962 -5.69180 -2.96776
0.29246 0.74682 2.15121 2.18443 2.89824 3.37842 3.48810 3.53728
3.55652 3.60846 3.97228 4.15777 4.24817 4.32063 4.48268 4.63300
4.68596 4.82620 4.96353 5.01826 5.09293 5.16774 5.17973 5.21296
5.34638 5.57566 5.58381 5.60654 5.65770 5.75234 5.77676 5.91417
5.94329 5.96561 6.04883 6.06629 6.17002 6.17918 6.31174 6.34971
6.42244 6.63268 6.66086 6.72355 6.77022 6.90471 7.03313 7.35081
7.77706 7.81218 8.42175 8.50166 9.61255 10.20089 10.55429 11.53903
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012657 B = 0.002380 C = 0.002209
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2211.597826 B =11763.359830 C =12672.341356
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.083 4.083
3 C -0.130 4.130
4 C 0.054 3.946
5 N -0.368 5.368
6 C 0.144 3.856
7 N -0.415 5.415
8 C -0.062 4.062
9 C 0.606 3.394
10 O -0.550 6.550
11 N -0.703 5.703
12 C 0.148 3.852
13 H 0.093 0.907
14 C -0.130 4.130
15 C -0.125 4.125
16 C -0.110 4.110
17 C -0.102 4.102
18 H 0.080 0.920
19 C 0.161 3.839
20 N -0.730 5.730
21 C -0.235 4.235
22 H 0.069 0.931
23 C -0.016 4.016
24 N -0.935 5.935
25 Si 0.906 3.094
26 H -0.290 1.290
27 H -0.292 1.292
28 H -0.283 1.283
29 C 0.081 3.919
30 C -0.073 4.073
31 H 0.076 0.924
32 H 0.074 0.926
33 H 0.070 0.930
34 H 0.151 0.849
35 H 0.170 0.830
36 H 0.218 0.782
37 H 0.407 0.593
38 H 0.068 0.932
39 H 0.063 0.937
40 H 0.062 0.938
41 H 0.063 0.937
42 H 0.070 0.930
43 H 0.074 0.926
44 H 0.018 0.982
45 H 0.021 0.979
46 H 0.384 0.616
47 H 0.254 0.746
48 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.468 22.640 -14.051 30.810
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.086 4.086
3 C -0.151 4.151
4 C -0.068 4.068
5 N -0.040 5.040
6 C -0.132 4.132
7 N -0.129 5.129
8 C -0.196 4.196
9 C 0.392 3.608
10 O -0.428 6.428
11 N -0.353 5.353
12 C 0.043 3.957
13 H 0.111 0.889
14 C -0.169 4.169
15 C -0.162 4.162
16 C -0.148 4.148
17 C -0.121 4.121
18 H 0.098 0.902
19 C 0.034 3.966
20 N -0.374 5.374
21 C -0.366 4.366
22 H 0.087 0.913
23 C -0.212 4.212
24 N -0.584 5.584
25 Si 0.737 3.263
26 H -0.218 1.218
27 H -0.218 1.218
28 H -0.208 1.208
29 C -0.032 4.032
30 C -0.092 4.092
31 H 0.094 0.906
32 H 0.093 0.907
33 H 0.089 0.911
34 H 0.168 0.832
35 H 0.187 0.813
36 H 0.234 0.766
37 H 0.243 0.757
38 H 0.086 0.914
39 H 0.082 0.918
40 H 0.081 0.919
41 H 0.081 0.919
42 H 0.089 0.911
43 H 0.092 0.908
44 H 0.036 0.964
45 H 0.039 0.961
46 H 0.217 0.783
47 H 0.064 0.936
48 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -15.398 21.929 -13.858 30.166
hybrid contribution 0.281 0.513 0.889 1.064
sum -15.117 22.441 -12.969 30.006
Atomic orbital electron populations
1.20780 0.89657 1.03523 1.02907 1.19964 0.97260 0.92139 0.99253
1.20826 0.92314 0.99390 1.02527 1.21673 0.93065 0.88605 1.03454
1.43035 1.08615 1.06347 1.45971 1.25056 0.82394 0.94140 1.11656
1.70072 1.25661 1.04207 1.13000 1.20520 0.87539 0.93726 1.17802
1.16468 0.84936 0.83246 0.76116 1.90786 1.22267 1.77821 1.51940
1.45942 1.09357 1.06320 1.73687 1.21716 0.99615 0.78196 0.96195
0.88918 1.22541 0.99203 0.98889 0.96283 1.22385 0.97912 0.98178
0.97773 1.22446 1.02446 0.96730 0.93168 1.22425 0.96675 0.96511
0.96495 0.90165 1.20680 0.90717 0.95696 0.89525 1.42328 1.10598
1.74482 1.10032 1.19242 0.97220 1.32943 0.87221 0.91296 1.24720
0.96104 1.02281 0.98050 1.69663 1.02511 1.51077 1.35116 0.86195
0.76643 0.78426 0.84996 1.21779 1.21839 1.20833 1.19267 0.93217
0.85138 1.05533 1.20672 0.89714 1.00033 0.98827 0.90552 0.90702
0.91072 0.83157 0.81263 0.76586 0.75692 0.91358 0.91783 0.91894
0.91868 0.91100 0.90762 0.96445 0.96129 0.78266 0.93626 0.82298
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.57 10.03 36.01 0.36 -0.21 16
2 C -0.08 -0.63 5.89 -104.50 -0.62 -1.24 16
3 C -0.13 -0.73 9.67 -39.91 -0.39 -1.11 16
4 C 0.05 0.32 10.95 -16.60 -0.18 0.14 16
5 N -0.37 -3.55 2.94 -62.18 -0.18 -3.74 16
6 C 0.14 1.41 12.73 -89.52 -1.14 0.27 16
7 N -0.42 -5.57 10.90 -10.53 -0.11 -5.68 16
8 C -0.06 -0.91 7.05 -82.58 -0.58 -1.49 16
9 C 0.61 9.84 7.76 -13.02 -0.10 9.73 16
10 O -0.55 -9.89 15.43 5.12 0.08 -9.81 16
11 N -0.70 -10.76 4.99 -54.14 -0.27 -11.03 16
12 C 0.15 2.29 2.80 -66.81 -0.19 2.11 16
13 H 0.09 1.58 7.30 -51.93 -0.38 1.20 16
14 C -0.13 -1.78 6.59 -25.61 -0.17 -1.95 16
15 C -0.12 -1.63 6.83 -25.08 -0.17 -1.80 16
16 C -0.11 -1.74 6.19 -24.74 -0.15 -1.90 16
17 C -0.10 -1.74 2.58 -88.96 -0.23 -1.97 16
18 H 0.08 1.39 7.73 -51.93 -0.40 0.99 16
19 C 0.16 3.45 5.54 -4.04 -0.02 3.43 16
20 N -0.73 -19.10 5.49 -59.91 -0.33 -19.43 16
21 C -0.23 -6.81 9.99 -15.06 -0.15 -6.97 16
22 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16
23 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16
24 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16
25 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16
26 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16
27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16
28 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16
29 C 0.08 1.02 6.72 -83.99 -0.56 0.46 16
30 C -0.07 -0.79 9.38 -39.54 -0.37 -1.16 16
31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16
32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16
33 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16
34 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16
35 H 0.17 0.34 8.06 -52.49 -0.42 -0.08 16
36 H 0.22 1.14 8.06 -52.49 -0.42 0.72 16
37 H 0.41 5.97 8.04 -40.82 -0.33 5.64 16
38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16
39 H 0.06 0.87 7.92 -51.93 -0.41 0.46 16
40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
42 H 0.07 1.16 7.97 -51.93 -0.41 0.75 16
43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16
44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16
45 H 0.02 0.45 8.02 -51.93 -0.42 0.03 16
46 H 0.38 10.42 7.64 -40.82 -0.31 10.11 16
47 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16
48 H 0.16 1.83 7.17 -52.48 -0.38 1.45 16
LS Contribution 397.00 15.07 5.98 5.98
Total: -1.00 -35.83 397.00 -11.12 -46.95
By element:
Atomic # 1 Polarization: 18.28 SS G_CDS: -7.23 Total: 11.05 kcal
Atomic # 6 Polarization: 0.54 SS G_CDS: -4.76 Total: -4.22 kcal
Atomic # 7 Polarization: -67.83 SS G_CDS: -0.17 Total: -68.00 kcal
Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal
Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -35.83 -11.12 -46.95 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001667734838.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.174 kcal
(2) G-P(sol) polarization free energy of solvation -35.829 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.345 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.122 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.951 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.223 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds