Wall clock time and date at job start Sat Apr 11 2020 06:43:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.40389 * 120.21994 * 2 1
4 4 C 1.35031 * 120.44027 * 179.97438 * 3 2 1
5 5 N 1.36527 * 120.59651 * 0.02900 * 4 3 2
6 6 C 1.36249 * 132.77930 * 180.02562 * 5 4 3
7 7 N 1.30187 * 109.81995 * 179.71729 * 6 5 4
8 8 C 1.34891 * 109.73400 * 0.41653 * 7 6 5
9 9 C 1.46279 * 126.49928 * 179.85333 * 8 7 6
10 10 O 1.21773 * 120.00234 * 179.68690 * 9 8 7
11 11 N 1.34786 * 119.99767 * 359.96119 * 9 8 7
12 12 C 1.46497 * 119.99732 * 179.72398 * 11 9 8
13 13 H 1.08997 * 110.01656 * 325.06197 * 12 11 9
14 14 C 1.53877 * 110.03400 * 86.45721 * 12 11 9
15 15 C 1.54264 * 106.59718 * 119.28271 * 14 12 11
16 16 C 1.54885 * 104.20032 * 23.60997 * 15 14 12
17 17 C 1.54270 * 110.03118 * 203.62217 * 12 11 9
18 18 H 1.09001 * 110.48497 * 335.78805 * 17 12 11
19 19 C 1.53006 * 110.48539 * 98.42446 * 17 12 11
20 20 N 1.46498 * 109.46872 * 185.00030 * 19 17 12
21 21 C 1.36936 * 119.99975 * 180.02562 * 20 19 17
22 22 H 1.08005 * 119.99918 * 359.97438 * 21 20 19
23 23 C 1.38811 * 120.00347 * 180.02562 * 21 20 19
24 24 N 1.31620 * 119.99573 * 359.97438 * 23 21 20
25 25 Si 1.86796 * 120.00300 * 179.97438 * 23 21 20
26 26 H 1.48504 * 109.47444 * 89.99293 * 25 23 21
27 27 H 1.48497 * 109.47195 * 209.99642 * 25 23 21
28 28 H 1.48502 * 109.46790 * 329.99485 * 25 23 21
29 29 C 1.37271 * 120.03736 * 359.97029 * 5 4 3
30 30 C 1.36331 * 120.22178 * 179.97438 * 2 1 3
31 31 H 1.08996 * 109.46750 * 89.99652 * 1 2 3
32 32 H 1.08996 * 109.47420 * 210.00365 * 1 2 3
33 33 H 1.09002 * 109.47063 * 330.00149 * 1 2 3
34 34 H 1.08000 * 119.78189 * 0.02562 * 3 2 1
35 35 H 1.08002 * 119.69862 * 179.97438 * 4 3 2
36 36 H 1.08002 * 125.09283 * 359.97090 * 6 5 4
37 37 H 0.97000 * 119.99685 * 359.72823 * 11 9 8
38 38 H 1.09000 * 110.03013 * 238.56721 * 14 12 11
39 39 H 1.08999 * 110.02619 * 359.95040 * 14 12 11
40 40 H 1.08999 * 110.48268 * 142.29285 * 15 14 12
41 41 H 1.09004 * 110.48526 * 264.92921 * 15 14 12
42 42 H 1.09001 * 110.75720 * 80.36715 * 16 15 14
43 43 H 1.08997 * 110.75954 * 203.55695 * 16 15 14
44 44 H 1.08992 * 109.47199 * 305.00495 * 19 17 12
45 45 H 1.09005 * 109.46518 * 65.00413 * 19 17 12
46 46 H 0.97006 * 120.00330 * 0.02562 * 20 19 17
47 47 H 0.97008 * 119.99917 * 180.02562 * 24 23 21
48 48 H 1.08004 * 120.39455 * 0.02562 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2136 1.2131 0.0000
4 6 3.5639 1.2183 0.0005
5 7 4.2634 0.0458 0.0005
6 6 5.5963 -0.2366 0.0013
7 7 5.7742 -1.5263 0.0069
8 6 4.5788 -2.1510 0.0006
9 6 4.3523 -3.5962 0.0009
10 8 3.2162 -4.0345 0.0005
11 7 5.4012 -4.4427 0.0070
12 6 5.1743 -5.8900 0.0133
13 1 4.2859 -6.1258 0.5991
14 6 5.0074 -6.4037 -1.4275
15 6 6.1407 -7.4228 -1.6660
16 6 6.5210 -7.9076 -0.2450
17 6 6.4032 -6.6149 0.6001
18 1 7.2976 -6.0022 0.4868
19 6 6.1702 -6.9573 2.0730
20 7 7.3914 -7.5357 2.6389
21 6 7.4210 -7.9225 3.9522
22 1 6.5441 -7.8007 4.5709
23 6 8.5782 -8.4701 4.4886
24 7 9.6469 -8.6181 3.7348
25 14 8.6187 -8.9971 6.2803
26 1 8.1938 -10.4159 6.3888
27 1 9.9992 -8.8521 6.8078
28 1 7.6952 -8.1421 7.0686
29 6 3.5948 -1.1531 0.0005
30 6 2.1932 -1.1780 0.0005
31 1 -0.3633 0.0001 -1.0276
32 1 -0.3634 -0.8899 0.5139
33 1 -0.3633 0.8900 0.5138
34 1 1.6737 2.1484 0.0004
35 1 4.0954 2.1585 0.0001
36 1 6.3868 0.4992 0.0019
37 1 6.3062 -4.0935 0.0073
38 1 4.0383 -6.8896 -1.5407
39 1 5.0944 -5.5760 -2.1313
40 1 5.7831 -8.2563 -2.2705
41 1 6.9927 -6.9406 -2.1454
42 1 5.8188 -8.6638 0.1060
43 1 7.5408 -8.2920 -0.2280
44 1 5.9101 -6.0511 2.6199
45 1 5.3557 -7.6771 2.1541
46 1 8.1791 -7.6448 2.0834
47 1 10.4556 -9.0011 4.1095
48 1 1.6633 -2.1191 0.0005
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001667734838.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:20
Heat of formation + Delta-G solvation = 25.043602 kcal
Electronic energy + Delta-G solvation = -29044.976991 eV
Core-core repulsion = 25099.557802 eV
Total energy + Delta-G solvation = -3945.419189 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-43.86921 -40.92514 -39.13996 -38.71494 -36.32993 -35.08222 -34.56384 -33.31110
-32.23288 -30.73078 -30.22159 -28.98131 -27.59571 -26.33492 -24.87783 -24.18659
-23.64012 -22.92651 -21.86323 -21.14819 -20.73455 -19.40266 -18.97113 -17.85745
-17.47878 -17.29339 -17.10407 -16.66290 -16.30194 -16.15907 -15.63377 -15.48590
-15.35920 -15.14387 -15.09204 -14.98055 -14.60328 -14.38092 -14.33460 -13.50136
-13.43683 -13.17696 -12.97211 -12.92601 -12.81818 -12.66571 -12.50258 -12.44712
-12.18848 -11.98150 -11.88865 -11.69038 -11.60089 -11.57904 -11.44601 -11.43454
-11.07679 -10.94060 -10.37836 -10.06534 -9.01847 -8.53822 -7.96392 -5.25371
-0.40114 0.07734 1.25099 1.45205 1.47480 1.47539 1.56072 2.24134
2.27204 2.54546 2.56017 3.34011 3.36282 3.41499 3.46529 3.66903
3.68852 3.78536 3.80519 3.90150 4.11448 4.13020 4.24673 4.38880
4.46378 4.52652 4.53884 4.58180 4.64040 4.67886 4.73648 4.79104
4.83388 4.95888 4.98397 4.99733 5.10108 5.15240 5.18485 5.22864
5.25203 5.31779 5.38652 5.44664 5.49264 5.53533 5.62943 6.11858
6.25654 6.42377 6.72536 7.23313 7.32235 8.06121 8.33012 9.26947
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012657 B = 0.002380 C = 0.002209
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2211.597826 B =11763.359830 C =12672.341356
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.050 4.050
3 C -0.137 4.137
4 C 0.066 3.934
5 N -0.371 5.371
6 C 0.154 3.846
7 N -0.448 5.448
8 C -0.123 4.123
9 C 0.601 3.399
10 O -0.582 6.582
11 N -0.703 5.703
12 C 0.154 3.846
13 H 0.072 0.928
14 C -0.122 4.122
15 C -0.110 4.110
16 C -0.108 4.108
17 C -0.091 4.091
18 H 0.077 0.923
19 C 0.164 3.836
20 N -0.738 5.738
21 C -0.249 4.249
22 H 0.069 0.931
23 C -0.073 4.073
24 N -0.966 5.966
25 Si 0.975 3.025
26 H -0.284 1.284
27 H -0.291 1.291
28 H -0.273 1.273
29 C 0.082 3.918
30 C -0.129 4.129
31 H 0.090 0.910
32 H 0.065 0.935
33 H 0.098 0.902
34 H 0.196 0.804
35 H 0.221 0.779
36 H 0.263 0.737
37 H 0.409 0.591
38 H 0.073 0.927
39 H 0.067 0.933
40 H 0.084 0.916
41 H 0.073 0.927
42 H 0.064 0.936
43 H 0.062 0.938
44 H 0.004 0.996
45 H 0.019 0.981
46 H 0.377 0.623
47 H 0.253 0.747
48 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.427 26.094 -14.549 34.094
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.054 4.054
3 C -0.157 4.157
4 C -0.055 4.055
5 N -0.042 5.042
6 C -0.124 4.124
7 N -0.162 5.162
8 C -0.254 4.254
9 C 0.390 3.610
10 O -0.463 6.463
11 N -0.352 5.352
12 C 0.049 3.951
13 H 0.091 0.909
14 C -0.161 4.161
15 C -0.148 4.148
16 C -0.146 4.146
17 C -0.110 4.110
18 H 0.096 0.904
19 C 0.038 3.962
20 N -0.381 5.381
21 C -0.381 4.381
22 H 0.087 0.913
23 C -0.265 4.265
24 N -0.617 5.617
25 Si 0.803 3.197
26 H -0.211 1.211
27 H -0.218 1.218
28 H -0.198 1.198
29 C -0.033 4.033
30 C -0.149 4.149
31 H 0.108 0.892
32 H 0.084 0.916
33 H 0.117 0.883
34 H 0.214 0.786
35 H 0.238 0.762
36 H 0.278 0.722
37 H 0.245 0.755
38 H 0.092 0.908
39 H 0.086 0.914
40 H 0.102 0.898
41 H 0.092 0.908
42 H 0.083 0.917
43 H 0.081 0.919
44 H 0.022 0.978
45 H 0.037 0.963
46 H 0.209 0.791
47 H 0.061 0.939
48 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -16.374 25.372 -14.365 33.440
hybrid contribution 0.419 -0.292 1.050 1.168
sum -15.955 25.081 -13.315 32.572
Atomic orbital electron populations
1.20918 0.87807 1.04472 1.03984 1.20451 0.98691 0.91884 0.94418
1.21394 0.92456 1.00032 1.01777 1.22703 0.93697 0.88835 1.00292
1.43278 1.08596 1.06558 1.45746 1.25922 0.83299 0.93820 1.09314
1.69944 1.25739 1.06137 1.14380 1.20239 0.89015 0.93085 1.23062
1.16818 0.84461 0.84405 0.75353 1.90737 1.23236 1.78641 1.53721
1.45895 1.09423 1.06043 1.73866 1.21558 0.97735 0.78606 0.97234
0.90948 1.22468 0.99841 0.99130 0.94628 1.22315 0.97925 0.98545
0.96016 1.22394 1.01646 0.95694 0.94883 1.22266 0.97269 0.97590
0.93919 0.90431 1.20734 0.88942 0.94497 0.92048 1.42463 1.11669
1.74604 1.09394 1.19595 0.97343 1.32712 0.88463 0.91307 1.25561
0.95778 1.02758 1.02427 1.69814 1.02946 1.52015 1.36899 0.85129
0.76591 0.78110 0.79854 1.21129 1.21759 1.19841 1.19387 0.93732
0.85989 1.04169 1.20580 0.89455 1.00695 1.04162 0.89198 0.91572
0.88326 0.78649 0.76250 0.72176 0.75470 0.90831 0.91414 0.89758
0.90782 0.91741 0.91872 0.97850 0.96327 0.79097 0.93860 0.84697
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.90 10.03 71.24 0.71 -0.18 16
2 C -0.05 -0.67 5.89 -19.78 -0.12 -0.79 16
3 C -0.14 -0.93 9.67 22.06 0.21 -0.71 16
4 C 0.07 0.50 10.95 83.22 0.91 1.41 16
5 N -0.37 -6.46 2.94 -350.65 -1.03 -7.49 16
6 C 0.15 2.78 12.73 179.96 2.29 5.07 16
7 N -0.45 -12.35 10.90 -187.24 -2.04 -14.39 16
8 C -0.12 -3.87 7.05 41.23 0.29 -3.58 16
9 C 0.60 21.34 7.76 86.33 0.67 22.02 16
10 O -0.58 -23.07 15.43 -4.58 -0.07 -23.14 16
11 N -0.70 -23.24 4.99 -443.38 -2.21 -25.46 16
12 C 0.15 5.07 2.80 45.72 0.13 5.20 16
13 H 0.07 2.68 7.30 -2.39 -0.02 2.66 16
14 C -0.12 -3.37 6.59 31.32 0.21 -3.16 16
15 C -0.11 -2.81 6.83 31.67 0.22 -2.59 16
16 C -0.11 -3.50 6.19 31.88 0.20 -3.31 16
17 C -0.09 -3.27 2.58 -9.72 -0.03 -3.29 16
18 H 0.08 2.83 7.73 -2.39 -0.02 2.81 16
19 C 0.16 7.41 5.54 86.38 0.48 7.89 16
20 N -0.74 -40.05 5.49 -343.45 -1.89 -41.94 16
21 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16
22 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16
23 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16
24 N -0.97 -60.68 13.06 21.65 0.28 -60.39 16
25 Si 0.97 47.93 29.55 68.60 2.03 49.96 16
26 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16
27 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16
28 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16
29 C 0.08 2.13 6.72 39.23 0.26 2.39 16
30 C -0.13 -2.94 9.38 22.30 0.21 -2.73 16
31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16
32 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16
33 H 0.10 0.27 8.10 -2.39 -0.02 0.26 16
34 H 0.20 -0.39 8.06 -2.91 -0.02 -0.42 16
35 H 0.22 -0.60 8.06 -2.91 -0.02 -0.62 16
36 H 0.26 1.81 8.06 -2.91 -0.02 1.79 16
37 H 0.41 12.97 8.04 -92.71 -0.75 12.23 16
38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
39 H 0.07 1.85 7.92 -2.39 -0.02 1.83 16
40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
41 H 0.07 1.75 8.14 -2.38 -0.02 1.74 16
42 H 0.06 2.16 7.97 -2.39 -0.02 2.14 16
43 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
44 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16
45 H 0.02 0.85 8.02 -2.38 -0.02 0.83 16
46 H 0.38 21.24 7.64 -92.70 -0.71 20.53 16
47 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16
48 H 0.14 3.58 7.17 -2.91 -0.02 3.56 16
Total: -1.00 -83.20 397.00 2.56 -80.65
By element:
Atomic # 1 Polarization: 36.88 SS G_CDS: -0.47 Total: 36.42 kcal
Atomic # 6 Polarization: -2.17 SS G_CDS: 7.95 Total: 5.79 kcal
Atomic # 7 Polarization: -142.78 SS G_CDS: -6.89 Total: -149.67 kcal
Atomic # 8 Polarization: -23.07 SS G_CDS: -0.07 Total: -23.14 kcal
Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal
Total: -83.20 2.56 -80.65 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001667734838.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.689 kcal
(2) G-P(sol) polarization free energy of solvation -83.204 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.484 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.044 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds