Wall clock time and date at job start Sat Apr 11 2020 06:42:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.39872 * 125.89754 * 2 1
4 4 C 1.35310 * 107.91792 * 179.71614 * 3 2 1
5 5 C 1.50704 * 126.12495 * 180.26624 * 4 3 2
6 6 N 1.34948 * 107.74855 * 0.42610 * 4 3 2
7 7 C 1.46501 * 126.03858 * 179.83890 * 6 4 3
8 8 C 1.50706 * 109.47147 * 269.71564 * 7 6 4
9 9 O 1.21288 * 119.99707 * 0.02562 * 8 7 6
10 10 N 1.34775 * 119.99969 * 179.97438 * 8 7 6
11 11 C 1.46498 * 119.99673 * 179.97438 * 10 8 7
12 12 C 1.53000 * 109.47043 * 179.97438 * 11 10 8
13 13 H 1.08999 * 109.47446 * 295.00641 * 12 11 10
14 14 N 1.46506 * 109.46808 * 55.00436 * 12 11 10
15 15 C 1.36938 * 119.99589 * 205.00092 * 14 12 11
16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 12
17 17 C 1.38815 * 119.99817 * 180.02562 * 15 14 12
18 18 N 1.31621 * 119.99673 * 359.71804 * 17 15 14
19 19 Si 1.86795 * 120.00115 * 179.97438 * 17 15 14
20 20 H 1.48494 * 109.47071 * 359.97438 * 19 17 15
21 21 H 1.48506 * 109.47211 * 119.99797 * 19 17 15
22 22 H 1.48493 * 109.47327 * 239.99664 * 19 17 15
23 23 C 1.50701 * 109.47055 * 175.00016 * 12 11 10
24 24 C 1.38239 * 120.00111 * 279.72946 * 23 12 11
25 25 C 1.38238 * 119.99813 * 179.81389 * 24 23 12
26 26 C 1.38233 * 120.00210 * 0.39213 * 25 24 23
27 27 C 1.38240 * 119.99603 * 359.86195 * 26 25 24
28 28 C 1.38230 * 119.99996 * 100.00415 * 23 12 11
29 29 N 1.30834 * 125.89755 * 179.97438 * 2 1 3
30 30 H 1.09001 * 109.47419 * 269.99727 * 1 2 3
31 31 H 1.08997 * 109.47350 * 29.99983 * 1 2 3
32 32 H 1.09000 * 109.47269 * 149.99934 * 1 2 3
33 33 H 1.08000 * 126.03940 * 359.97438 * 3 2 1
34 34 H 1.09002 * 109.46832 * 270.18336 * 5 4 3
35 35 H 1.08993 * 109.47424 * 30.19168 * 5 4 3
36 36 H 1.09000 * 109.47017 * 150.19137 * 5 4 3
37 37 H 1.08994 * 109.47351 * 149.71854 * 7 6 4
38 38 H 1.09001 * 109.47150 * 29.71099 * 7 6 4
39 39 H 0.96995 * 120.00100 * 0.02562 * 10 8 7
40 40 H 1.09004 * 109.47353 * 60.00016 * 11 10 8
41 41 H 1.08999 * 109.47248 * 300.00266 * 11 10 8
42 42 H 0.96999 * 120.00080 * 24.99582 * 14 12 11
43 43 H 0.97000 * 120.00043 * 180.02562 * 18 17 15
44 44 H 1.07998 * 119.99958 * 359.97438 * 24 23 12
45 45 H 1.08000 * 119.99590 * 180.22723 * 25 24 23
46 46 H 1.07997 * 119.99992 * 179.83484 * 26 25 24
47 47 H 1.07997 * 119.99389 * 179.97438 * 27 26 25
48 48 H 1.08006 * 119.99987 * 359.97438 * 28 23 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3271 1.1331 0.0000
4 6 3.6141 0.7154 0.0064
5 6 4.8349 1.5990 0.0144
6 7 3.6087 -0.6341 0.0007
7 6 4.7899 -1.5007 0.0012
8 6 5.1957 -1.7976 -1.4195
9 8 4.5610 -1.3308 -2.3416
10 7 6.2645 -2.5810 -1.6653
11 6 6.6586 -2.8701 -3.0463
12 6 7.8930 -3.7740 -3.0458
13 1 8.7364 -3.2372 -2.6116
14 7 7.6183 -4.9752 -2.2532
15 6 8.6508 -5.6664 -1.6775
16 1 9.6675 -5.3264 -1.8081
17 6 8.3906 -6.8047 -0.9269
18 7 7.1511 -7.2165 -0.7640
19 14 9.7990 -7.7481 -0.1421
20 1 11.0846 -7.0809 -0.4692
21 1 9.6159 -7.7758 1.3314
22 1 9.8159 -9.1379 -0.6649
23 6 8.2253 -4.1713 -4.4611
24 6 7.5258 -5.1939 -5.0743
25 6 7.8280 -5.5557 -6.3738
26 6 8.8351 -4.9003 -7.0573
27 6 9.5381 -3.8813 -6.4422
28 6 9.2333 -3.5169 -5.1441
29 7 2.2741 -1.0598 0.0005
30 1 -0.3634 0.0000 1.0277
31 1 -0.3634 0.8899 -0.5138
32 1 -0.3634 -0.8900 -0.5138
33 1 1.9922 2.1598 -0.0004
34 1 5.1329 1.8162 -1.0114
35 1 4.6057 2.5308 0.5313
36 1 5.6493 1.0889 0.5289
37 1 4.5561 -2.4333 0.5147
38 1 5.6091 -0.9982 0.5155
39 1 6.7723 -2.9540 -0.9278
40 1 6.8918 -1.9376 -3.5604
41 1 5.8395 -3.3732 -3.5602
42 1 6.7052 -5.2807 -2.1362
43 1 6.9692 -8.0117 -0.2392
44 1 6.7415 -5.7084 -4.5390
45 1 7.2791 -6.3521 -6.8541
46 1 9.0730 -5.1848 -8.0716
47 1 10.3251 -3.3696 -6.9761
48 1 9.7825 -2.7207 -4.6636
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001753300230.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:30
Heat of formation + Delta-G solvation = 75.403084 kcal
Electronic energy + Delta-G solvation = -29056.995220 eV
Core-core repulsion = 25113.759782 eV
Total energy + Delta-G solvation = -3943.235438 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.31152 -39.48961 -38.76385 -35.99778 -34.06976 -33.69028 -32.20956 -31.94634
-30.45454 -29.95561 -29.60793 -27.75523 -27.03697 -25.75441 -23.75466 -22.80079
-21.97549 -20.68347 -20.32248 -20.03726 -19.21051 -17.60739 -17.17702 -16.79857
-16.35248 -15.56003 -15.43943 -15.04641 -14.86742 -14.62333 -14.20257 -14.01922
-13.85336 -13.68836 -13.42773 -13.34478 -13.08033 -12.99274 -12.91030 -12.80497
-12.60271 -12.46346 -12.27382 -12.16341 -11.92565 -11.82738 -11.18776 -11.01885
-10.89052 -10.77193 -10.51093 -10.44175 -10.16501 -9.97895 -9.85788 -9.15968
-8.97728 -8.81718 -8.44949 -8.42970 -8.23030 -7.19938 -5.92615 -3.24606
1.79471 1.86501 1.89216 2.38396 2.69319 2.83082 3.33188 3.40610
3.42183 3.45466 4.26181 4.44929 4.45976 4.55719 4.81333 4.90080
4.92468 5.11901 5.18668 5.28765 5.30304 5.35920 5.36936 5.40831
5.49410 5.55490 5.55993 5.63432 5.65543 5.71372 5.79922 5.81459
5.86796 5.98858 6.04655 6.19046 6.21390 6.35235 6.43658 6.58096
6.65892 6.73351 6.89087 6.97744 7.00215 7.23461 7.48666 7.58432
7.71586 7.81395 8.23061 8.35166 9.36412 9.85634 10.22215 11.28588
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.009514 B = 0.002911 C = 0.002464
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2942.191389 B = 9617.610708 C =11362.597395
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 C 0.069 3.931
3 C -0.276 4.276
4 C 0.094 3.906
5 C -0.093 4.093
6 N -0.351 5.351
7 C 0.112 3.888
8 C 0.495 3.505
9 O -0.533 6.533
10 N -0.708 5.708
11 C 0.123 3.877
12 C 0.199 3.801
13 H 0.066 0.934
14 N -0.714 5.714
15 C -0.245 4.245
16 H 0.072 0.928
17 C -0.005 4.005
18 N -0.927 5.927
19 Si 0.905 3.095
20 H -0.280 1.280
21 H -0.291 1.291
22 H -0.291 1.291
23 C -0.083 4.083
24 C -0.083 4.083
25 C -0.128 4.128
26 C -0.134 4.134
27 C -0.130 4.130
28 C -0.120 4.120
29 N -0.284 5.284
30 H 0.074 0.926
31 H 0.075 0.925
32 H 0.071 0.929
33 H 0.144 0.856
34 H 0.081 0.919
35 H 0.084 0.916
36 H 0.069 0.931
37 H 0.128 0.872
38 H 0.120 0.880
39 H 0.412 0.588
40 H 0.067 0.933
41 H 0.066 0.934
42 H 0.387 0.613
43 H 0.256 0.744
44 H 0.123 0.877
45 H 0.114 0.886
46 H 0.111 0.889
47 H 0.112 0.888
48 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.567 15.793 -0.929 16.218
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.097 4.097
3 C -0.305 4.305
4 C -0.032 4.032
5 C -0.151 4.151
6 N -0.133 5.133
7 C -0.014 4.014
8 C 0.278 3.722
9 O -0.410 6.410
10 N -0.361 5.361
11 C -0.002 4.002
12 C 0.088 3.912
13 H 0.084 0.916
14 N -0.355 5.355
15 C -0.376 4.376
16 H 0.090 0.910
17 C -0.202 4.202
18 N -0.574 5.574
19 Si 0.736 3.264
20 H -0.205 1.205
21 H -0.218 1.218
22 H -0.218 1.218
23 C -0.087 4.087
24 C -0.101 4.101
25 C -0.146 4.146
26 C -0.152 4.152
27 C -0.148 4.148
28 C -0.139 4.139
29 N -0.106 5.106
30 H 0.092 0.908
31 H 0.094 0.906
32 H 0.090 0.910
33 H 0.162 0.838
34 H 0.100 0.900
35 H 0.103 0.897
36 H 0.088 0.912
37 H 0.146 0.854
38 H 0.138 0.862
39 H 0.249 0.751
40 H 0.085 0.915
41 H 0.085 0.915
42 H 0.222 0.778
43 H 0.066 0.934
44 H 0.141 0.859
45 H 0.132 0.868
46 H 0.129 0.871
47 H 0.130 0.870
48 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -3.703 14.681 -1.486 15.213
hybrid contribution 0.927 -0.367 0.623 1.176
sum -2.776 14.313 -0.863 14.606
Atomic orbital electron populations
1.20136 0.86873 1.03173 1.02639 1.22278 0.96834 0.90873 0.99736
1.21010 0.90912 0.99514 1.19031 1.21032 0.97345 0.84408 1.00461
1.20464 0.93036 0.98093 1.03539 1.47836 1.04692 1.03637 1.57123
1.21469 0.86038 0.97484 0.96366 1.20666 0.80906 0.79548 0.91048
1.90743 1.52855 1.51774 1.45584 1.45877 1.30102 1.50010 1.10128
1.21598 0.97657 0.98823 0.82091 1.19475 0.94726 0.88993 0.88018
0.91616 1.42483 1.07583 1.27221 1.58249 1.19221 0.88242 1.05618
1.24495 0.91020 1.24732 0.96249 0.98379 1.00802 1.69664 1.17281
1.26053 1.44408 0.86157 0.81456 0.79971 0.78796 1.20525 1.21798
1.21836 1.20966 0.95144 0.95589 0.96958 1.21014 0.99468 0.95958
0.93699 1.21115 0.98247 0.99933 0.95282 1.20990 0.97248 0.97417
0.99529 1.20986 1.00075 0.98298 0.95467 1.21002 0.98118 1.00126
0.94648 1.77368 0.85914 1.22544 1.24762 0.90758 0.90641 0.91001
0.83829 0.90021 0.89681 0.91248 0.85442 0.86175 0.75116 0.91472
0.91535 0.77835 0.93362 0.85909 0.86827 0.87050 0.86968 0.86756
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.69 10.45 36.00 0.38 -0.32 16
2 C 0.07 0.97 7.22 -82.41 -0.59 0.38 16
3 C -0.28 -3.51 10.65 -40.01 -0.43 -3.93 16
4 C 0.09 1.22 6.93 -82.26 -0.57 0.65 16
5 C -0.09 -0.82 10.12 36.01 0.36 -0.46 16
6 N -0.35 -5.21 3.10 -58.31 -0.18 -5.39 16
7 C 0.11 1.43 6.73 -5.19 -0.03 1.39 16
8 C 0.49 7.77 7.90 -10.98 -0.09 7.68 16
9 O -0.53 -10.50 16.43 5.55 0.09 -10.41 16
10 N -0.71 -10.67 5.39 -60.29 -0.32 -11.00 16
11 C 0.12 1.99 5.21 -4.04 -0.02 1.97 16
12 C 0.20 3.50 2.65 -69.08 -0.18 3.32 16
13 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16
14 N -0.71 -15.51 3.79 -54.55 -0.21 -15.71 16
15 C -0.25 -6.09 9.92 -15.06 -0.15 -6.24 16
16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16
17 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16
18 N -0.93 -25.90 13.06 55.49 0.72 -25.17 16
19 Si 0.91 21.15 29.55 -169.99 -5.02 16.13 16
20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
23 C -0.08 -1.46 4.92 -104.62 -0.52 -1.97 16
24 C -0.08 -1.52 9.33 -39.58 -0.37 -1.88 16
25 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16
26 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16
27 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16
28 C -0.12 -1.88 9.67 -39.59 -0.38 -2.26 16
29 N -0.28 -4.73 12.58 33.67 0.42 -4.31 16
30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16
34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
36 H 0.07 0.52 7.08 -51.93 -0.37 0.15 16
37 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16
38 H 0.12 1.06 7.04 -51.93 -0.37 0.69 16
39 H 0.41 5.99 8.14 -40.82 -0.33 5.65 16
40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
41 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16
42 H 0.39 9.18 7.80 -40.82 -0.32 8.86 16
43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
44 H 0.12 2.41 7.71 -52.49 -0.40 2.01 16
45 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16
46 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16
47 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16
48 H 0.11 1.55 8.04 -52.48 -0.42 1.13 16
LS Contribution 409.78 15.07 6.18 6.18
Total: -1.00 -33.30 409.78 -9.44 -42.75
By element:
Atomic # 1 Polarization: 23.16 SS G_CDS: -7.24 Total: 15.92 kcal
Atomic # 6 Polarization: -5.10 SS G_CDS: -3.88 Total: -8.98 kcal
Atomic # 7 Polarization: -62.02 SS G_CDS: 0.44 Total: -61.58 kcal
Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal
Total LS contribution 6.18 Total: 6.18 kcal
Total: -33.30 -9.44 -42.75 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753300230.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.148 kcal
(2) G-P(sol) polarization free energy of solvation -33.300 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal
(6) G-S(sol) free energy of system = (1) + (5) 75.403 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds