Wall clock time and date at job start Sat Apr 11 2020 06:42:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.39872 * 125.89754 * 2 1
4 4 C 1.35310 * 107.91792 * 179.71614 * 3 2 1
5 5 C 1.50704 * 126.12495 * 180.26624 * 4 3 2
6 6 N 1.34948 * 107.74855 * 0.42610 * 4 3 2
7 7 C 1.46501 * 126.03858 * 179.83890 * 6 4 3
8 8 C 1.50706 * 109.47147 * 269.71564 * 7 6 4
9 9 O 1.21288 * 119.99707 * 0.02562 * 8 7 6
10 10 N 1.34775 * 119.99969 * 179.97438 * 8 7 6
11 11 C 1.46498 * 119.99673 * 179.97438 * 10 8 7
12 12 C 1.53000 * 109.47043 * 179.97438 * 11 10 8
13 13 H 1.08999 * 109.47446 * 295.00641 * 12 11 10
14 14 N 1.46506 * 109.46808 * 55.00436 * 12 11 10
15 15 C 1.36938 * 119.99589 * 205.00092 * 14 12 11
16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 12
17 17 C 1.38815 * 119.99817 * 180.02562 * 15 14 12
18 18 N 1.31621 * 119.99673 * 359.71804 * 17 15 14
19 19 Si 1.86795 * 120.00115 * 179.97438 * 17 15 14
20 20 H 1.48494 * 109.47071 * 359.97438 * 19 17 15
21 21 H 1.48506 * 109.47211 * 119.99797 * 19 17 15
22 22 H 1.48493 * 109.47327 * 239.99664 * 19 17 15
23 23 C 1.50701 * 109.47055 * 175.00016 * 12 11 10
24 24 C 1.38239 * 120.00111 * 279.72946 * 23 12 11
25 25 C 1.38238 * 119.99813 * 179.81389 * 24 23 12
26 26 C 1.38233 * 120.00210 * 0.39213 * 25 24 23
27 27 C 1.38240 * 119.99603 * 359.86195 * 26 25 24
28 28 C 1.38230 * 119.99996 * 100.00415 * 23 12 11
29 29 N 1.30834 * 125.89755 * 179.97438 * 2 1 3
30 30 H 1.09001 * 109.47419 * 269.99727 * 1 2 3
31 31 H 1.08997 * 109.47350 * 29.99983 * 1 2 3
32 32 H 1.09000 * 109.47269 * 149.99934 * 1 2 3
33 33 H 1.08000 * 126.03940 * 359.97438 * 3 2 1
34 34 H 1.09002 * 109.46832 * 270.18336 * 5 4 3
35 35 H 1.08993 * 109.47424 * 30.19168 * 5 4 3
36 36 H 1.09000 * 109.47017 * 150.19137 * 5 4 3
37 37 H 1.08994 * 109.47351 * 149.71854 * 7 6 4
38 38 H 1.09001 * 109.47150 * 29.71099 * 7 6 4
39 39 H 0.96995 * 120.00100 * 0.02562 * 10 8 7
40 40 H 1.09004 * 109.47353 * 60.00016 * 11 10 8
41 41 H 1.08999 * 109.47248 * 300.00266 * 11 10 8
42 42 H 0.96999 * 120.00080 * 24.99582 * 14 12 11
43 43 H 0.97000 * 120.00043 * 180.02562 * 18 17 15
44 44 H 1.07998 * 119.99958 * 359.97438 * 24 23 12
45 45 H 1.08000 * 119.99590 * 180.22723 * 25 24 23
46 46 H 1.07997 * 119.99992 * 179.83484 * 26 25 24
47 47 H 1.07997 * 119.99389 * 179.97438 * 27 26 25
48 48 H 1.08006 * 119.99987 * 359.97438 * 28 23 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3271 1.1331 0.0000
4 6 3.6141 0.7154 0.0064
5 6 4.8349 1.5990 0.0144
6 7 3.6087 -0.6341 0.0007
7 6 4.7899 -1.5007 0.0012
8 6 5.1957 -1.7976 -1.4195
9 8 4.5610 -1.3308 -2.3416
10 7 6.2645 -2.5810 -1.6653
11 6 6.6586 -2.8701 -3.0463
12 6 7.8930 -3.7740 -3.0458
13 1 8.7364 -3.2372 -2.6116
14 7 7.6183 -4.9752 -2.2532
15 6 8.6508 -5.6664 -1.6775
16 1 9.6675 -5.3264 -1.8081
17 6 8.3906 -6.8047 -0.9269
18 7 7.1511 -7.2165 -0.7640
19 14 9.7990 -7.7481 -0.1421
20 1 11.0846 -7.0809 -0.4692
21 1 9.6159 -7.7758 1.3314
22 1 9.8159 -9.1379 -0.6649
23 6 8.2253 -4.1713 -4.4611
24 6 7.5258 -5.1939 -5.0743
25 6 7.8280 -5.5557 -6.3738
26 6 8.8351 -4.9003 -7.0573
27 6 9.5381 -3.8813 -6.4422
28 6 9.2333 -3.5169 -5.1441
29 7 2.2741 -1.0598 0.0005
30 1 -0.3634 0.0000 1.0277
31 1 -0.3634 0.8899 -0.5138
32 1 -0.3634 -0.8900 -0.5138
33 1 1.9922 2.1598 -0.0004
34 1 5.1329 1.8162 -1.0114
35 1 4.6057 2.5308 0.5313
36 1 5.6493 1.0889 0.5289
37 1 4.5561 -2.4333 0.5147
38 1 5.6091 -0.9982 0.5155
39 1 6.7723 -2.9540 -0.9278
40 1 6.8918 -1.9376 -3.5604
41 1 5.8395 -3.3732 -3.5602
42 1 6.7052 -5.2807 -2.1362
43 1 6.9692 -8.0117 -0.2392
44 1 6.7415 -5.7084 -4.5390
45 1 7.2791 -6.3521 -6.8541
46 1 9.0730 -5.1848 -8.0716
47 1 10.3251 -3.3696 -6.9761
48 1 9.7825 -2.7207 -4.6636
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001753300230.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:29
Heat of formation + Delta-G solvation = 54.748621 kcal
Electronic energy + Delta-G solvation = -29057.890864 eV
Core-core repulsion = 25113.759782 eV
Total energy + Delta-G solvation = -3944.131083 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.31526 -40.79384 -40.04048 -37.45304 -35.27989 -35.07729 -33.72142 -32.93879
-31.71870 -31.19876 -30.92112 -29.05782 -27.90246 -26.89324 -25.51940 -24.13733
-23.23635 -21.87716 -21.46022 -21.27173 -20.23715 -19.33526 -18.48779 -17.93234
-17.60576 -16.96983 -16.67543 -16.43181 -16.03837 -15.90686 -15.73078 -15.25321
-15.05003 -14.79696 -14.71538 -14.44831 -14.21146 -14.10590 -14.06836 -13.88860
-13.82297 -13.45384 -13.26642 -13.18976 -13.03980 -12.91418 -12.81287 -12.67808
-12.43724 -12.16509 -12.00058 -11.84516 -11.64828 -11.43915 -11.28997 -11.00593
-10.16088 -10.03156 -9.69517 -9.55381 -9.41016 -9.04862 -7.93009 -5.22790
0.56314 0.63081 0.84090 1.42107 1.44470 1.47370 1.50459 1.57872
1.86426 2.25451 2.55764 3.00327 3.41150 3.52843 3.65231 3.74577
3.78747 4.02037 4.03214 4.06451 4.14416 4.20317 4.26170 4.33201
4.34498 4.39822 4.53755 4.67078 4.71357 4.77682 4.78083 4.81243
4.82245 4.93479 5.01027 5.02216 5.07155 5.20137 5.28950 5.33952
5.36372 5.55375 5.67763 5.71781 5.78558 5.92079 6.07235 6.23905
6.27373 6.46997 6.80510 7.09798 7.35012 8.02186 8.28459 9.29114
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.009514 B = 0.002911 C = 0.002464
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2942.191389 B = 9617.610708 C =11362.597395
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 C 0.058 3.942
3 C -0.289 4.289
4 C 0.088 3.912
5 C -0.091 4.091
6 N -0.366 5.366
7 C 0.114 3.886
8 C 0.497 3.503
9 O -0.576 6.576
10 N -0.701 5.701
11 C 0.135 3.865
12 C 0.206 3.794
13 H 0.078 0.922
14 N -0.719 5.719
15 C -0.227 4.227
16 H 0.077 0.923
17 C -0.063 4.063
18 N -0.964 5.964
19 Si 0.961 3.039
20 H -0.267 1.267
21 H -0.294 1.294
22 H -0.304 1.304
23 C -0.103 4.103
24 C -0.112 4.112
25 C -0.139 4.139
26 C -0.131 4.131
27 C -0.126 4.126
28 C -0.125 4.125
29 N -0.342 5.342
30 H 0.091 0.909
31 H 0.097 0.903
32 H 0.062 0.938
33 H 0.170 0.830
34 H 0.078 0.922
35 H 0.110 0.890
36 H 0.085 0.915
37 H 0.129 0.871
38 H 0.164 0.836
39 H 0.417 0.583
40 H 0.080 0.920
41 H 0.041 0.959
42 H 0.374 0.626
43 H 0.248 0.752
44 H 0.093 0.907
45 H 0.125 0.875
46 H 0.144 0.856
47 H 0.148 0.852
48 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.444 18.137 -1.434 18.251
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.108 4.108
3 C -0.317 4.317
4 C -0.039 4.039
5 C -0.149 4.149
6 N -0.148 5.148
7 C -0.011 4.011
8 C 0.282 3.718
9 O -0.456 6.456
10 N -0.353 5.353
11 C 0.010 3.990
12 C 0.096 3.904
13 H 0.096 0.904
14 N -0.358 5.358
15 C -0.359 4.359
16 H 0.094 0.906
17 C -0.256 4.256
18 N -0.614 5.614
19 Si 0.792 3.208
20 H -0.191 1.191
21 H -0.221 1.221
22 H -0.232 1.232
23 C -0.106 4.106
24 C -0.130 4.130
25 C -0.157 4.157
26 C -0.149 4.149
27 C -0.144 4.144
28 C -0.143 4.143
29 N -0.164 5.164
30 H 0.109 0.891
31 H 0.116 0.884
32 H 0.081 0.919
33 H 0.188 0.812
34 H 0.097 0.903
35 H 0.129 0.871
36 H 0.104 0.896
37 H 0.147 0.853
38 H 0.181 0.819
39 H 0.254 0.746
40 H 0.098 0.902
41 H 0.060 0.940
42 H 0.206 0.794
43 H 0.057 0.943
44 H 0.111 0.889
45 H 0.143 0.857
46 H 0.161 0.839
47 H 0.166 0.834
48 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -1.541 17.062 -2.002 17.248
hybrid contribution 0.272 -1.005 0.640 1.222
sum -1.268 16.057 -1.362 16.165
Atomic orbital electron populations
1.20271 0.84668 1.03810 1.03911 1.22984 0.98492 0.90917 0.98399
1.21447 0.90872 1.00452 1.18977 1.21788 0.99023 0.84094 0.98989
1.20611 0.91815 0.98558 1.03899 1.48010 1.04421 1.04589 1.57760
1.21628 0.86958 0.98281 0.94261 1.21201 0.80048 0.78524 0.92009
1.90717 1.54110 1.53539 1.47241 1.45821 1.30105 1.49646 1.09773
1.21407 0.96200 0.98711 0.82705 1.19554 0.95433 0.87491 0.87877
0.90432 1.42524 1.06283 1.28238 1.58803 1.19496 0.88942 1.04893
1.22536 0.90551 1.25358 0.97875 0.99858 1.02528 1.69808 1.19007
1.26506 1.46086 0.85254 0.79794 0.78126 0.77630 1.19109 1.22110
1.23227 1.20895 0.96434 0.96347 0.96913 1.20952 0.99908 0.97164
0.95013 1.21339 0.99109 1.00618 0.94609 1.21392 0.95995 0.96720
1.00794 1.21430 1.00238 0.97742 0.94982 1.21297 0.97300 1.00359
0.95368 1.77287 0.87319 1.24536 1.27279 0.89081 0.88408 0.91887
0.81221 0.90320 0.87136 0.89641 0.85345 0.81904 0.74598 0.90174
0.94044 0.79360 0.94271 0.88891 0.85657 0.83867 0.83436 0.84444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.32 10.45 71.24 0.74 -0.58 16
2 C 0.06 1.63 7.22 43.10 0.31 1.95 16
3 C -0.29 -7.04 10.65 21.99 0.23 -6.81 16
4 C 0.09 2.16 6.93 41.40 0.29 2.45 16
5 C -0.09 -1.38 10.12 71.24 0.72 -0.66 16
6 N -0.37 -10.81 3.10 -338.40 -1.05 -11.86 16
7 C 0.11 2.84 6.73 85.63 0.58 3.42 16
8 C 0.50 15.75 7.90 87.66 0.69 16.44 16
9 O -0.58 -23.28 16.43 -3.05 -0.05 -23.33 16
10 N -0.70 -21.25 5.39 -463.05 -2.50 -23.75 16
11 C 0.13 4.43 5.21 86.38 0.45 4.88 16
12 C 0.21 7.21 2.65 44.24 0.12 7.33 16
13 H 0.08 2.55 7.94 -2.39 -0.02 2.53 16
14 N -0.72 -31.81 3.79 -326.49 -1.24 -33.04 16
15 C -0.23 -11.28 9.92 84.03 0.83 -10.45 16
16 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16
17 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16
18 N -0.96 -55.52 13.06 21.65 0.28 -55.23 16
19 Si 0.96 43.83 29.55 68.60 2.03 45.86 16
20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16
21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16
22 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16
23 C -0.10 -3.56 4.92 -19.87 -0.10 -3.66 16
24 C -0.11 -4.18 9.33 22.27 0.21 -3.97 16
25 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16
26 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16
27 C -0.13 -3.20 10.05 22.27 0.22 -2.97 16
28 C -0.12 -3.59 9.67 22.27 0.22 -3.37 16
29 N -0.34 -11.70 12.58 -47.39 -0.60 -12.29 16
30 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16
31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16
32 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16
33 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16
34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16
36 H 0.08 1.01 7.08 -2.39 -0.02 0.99 16
37 H 0.13 3.17 8.14 -2.39 -0.02 3.16 16
38 H 0.16 2.52 7.04 -2.39 -0.02 2.51 16
39 H 0.42 12.02 8.14 -92.71 -0.75 11.26 16
40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16
41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
42 H 0.37 18.52 7.80 -92.71 -0.72 17.80 16
43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16
44 H 0.09 3.94 7.71 -2.91 -0.02 3.92 16
45 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16
46 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16
47 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16
48 H 0.14 3.25 8.04 -2.91 -0.02 3.22 16
Total: -1.00 -75.02 409.78 2.81 -72.21
By element:
Atomic # 1 Polarization: 48.26 SS G_CDS: -0.50 Total: 47.76 kcal
Atomic # 6 Polarization: -12.74 SS G_CDS: 6.43 Total: -6.31 kcal
Atomic # 7 Polarization: -131.08 SS G_CDS: -5.09 Total: -136.18 kcal
Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.33 kcal
Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal
Total: -75.02 2.81 -72.21 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753300230.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.958 kcal
(2) G-P(sol) polarization free energy of solvation -75.023 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.934 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.209 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.749 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds