Wall clock time and date at job start Sat Apr 11 2020 06:42:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50702 * 109.47084 * 2 1
4 4 C 1.39868 * 125.89922 * 125.24058 * 3 2 1
5 5 C 1.35319 * 107.92137 * 180.14153 * 4 3 2
6 6 C 1.50692 * 126.12902 * 179.90334 * 5 4 3
7 7 C 1.50703 * 109.47332 * 84.68670 * 6 5 4
8 8 O 1.21282 * 119.99906 * 359.97438 * 7 6 5
9 9 N 1.34772 * 120.00166 * 180.02562 * 7 6 5
10 10 C 1.46506 * 120.00261 * 359.97438 * 9 7 6
11 11 C 1.50699 * 109.46984 * 270.00419 * 10 9 7
12 12 H 1.08001 * 119.99815 * 359.97438 * 11 10 9
13 13 C 1.37873 * 120.00137 * 180.02562 * 11 10 9
14 14 N 1.31517 * 119.99959 * 359.97438 * 13 11 10
15 15 Si 1.86801 * 120.00188 * 179.97438 * 13 11 10
16 16 H 1.48497 * 109.47031 * 359.97438 * 15 13 11
17 17 H 1.48500 * 109.47074 * 119.99601 * 15 13 11
18 18 H 1.48504 * 109.47014 * 239.99595 * 15 13 11
19 19 C 1.46501 * 119.99994 * 179.97438 * 9 7 6
20 20 C 1.50706 * 109.46941 * 269.99872 * 19 9 7
21 21 C 1.38227 * 119.61686 * 95.02727 * 20 19 9
22 22 C 1.38627 * 119.15663 * 179.70253 * 21 20 19
23 23 C 1.38669 * 118.42388 * 0.51169 * 22 21 20
24 24 C 1.38186 * 119.16143 * 359.50231 * 23 22 21
25 25 N 1.31856 * 119.61480 * 274.99645 * 20 19 9
26 26 N 1.34945 * 107.74348 * 359.63689 * 5 4 3
27 27 C 1.46500 * 126.03987 * 180.20816 * 26 5 4
28 28 N 1.30845 * 125.89959 * 304.97446 * 3 2 1
29 29 H 1.09007 * 109.47455 * 59.99890 * 1 2 3
30 30 H 1.08998 * 109.47294 * 180.02562 * 1 2 3
31 31 H 1.09008 * 109.46880 * 300.00148 * 1 2 3
32 32 H 1.09000 * 109.47140 * 240.00021 * 2 1 3
33 33 H 1.08997 * 109.47363 * 119.99957 * 2 1 3
34 34 H 1.07996 * 126.04040 * 0.02562 * 4 3 2
35 35 H 1.09004 * 109.47295 * 324.68940 * 6 5 4
36 36 H 1.09004 * 109.47341 * 204.68870 * 6 5 4
37 37 H 1.08997 * 109.46723 * 29.99772 * 10 9 7
38 38 H 1.08997 * 109.47310 * 149.99801 * 10 9 7
39 39 H 0.97000 * 120.00071 * 180.02562 * 14 13 11
40 40 H 1.08997 * 109.47174 * 150.00085 * 19 9 7
41 41 H 1.08997 * 109.46998 * 29.99942 * 19 9 7
42 42 H 1.07998 * 120.41947 * 359.94797 * 21 20 19
43 43 H 1.08008 * 120.78691 * 180.26734 * 22 21 20
44 44 H 1.08002 * 120.42244 * 179.78749 * 23 22 21
45 45 H 1.07996 * 119.61757 * 180.25243 * 24 23 22
46 46 H 1.09007 * 109.47174 * 89.99561 * 27 26 5
47 47 H 1.08998 * 109.47889 * 209.99964 * 27 26 5
48 48 H 1.09007 * 109.46911 * 330.00489 * 27 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.9221 1.9762 0.9254
5 6 3.1214 3.2709 0.5861
6 6 4.0065 4.2528 1.3095
7 6 5.4246 4.1050 0.8215
8 8 5.6905 3.2829 -0.0296
9 7 6.3976 4.8857 1.3316
10 6 6.0766 5.8784 2.3601
11 6 5.7200 7.1863 1.7019
12 1 5.7318 7.2699 0.6252
13 6 5.3798 8.2766 2.4743
14 7 5.3660 8.1750 3.7855
15 14 4.9385 9.8980 1.6585
16 1 5.0301 9.7511 0.1836
17 1 3.5532 10.2798 2.0332
18 1 5.8819 10.9523 2.1100
19 6 7.7763 4.7417 0.8576
20 6 8.4955 3.7247 1.7059
21 6 8.5613 2.4092 1.2866
22 6 9.2306 1.4829 2.0714
23 6 9.8020 1.9140 3.2590
24 6 9.6950 3.2454 3.6134
25 7 9.0551 4.1002 2.8393
26 7 2.3903 3.5235 -0.5196
27 6 2.3152 4.8028 -1.2296
28 7 1.7153 2.3467 -0.8685
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8899
34 1 3.3693 1.4629 1.7637
35 1 3.9685 4.0553 2.3808
36 1 3.6590 5.2673 1.1145
37 1 5.2316 5.5276 2.9525
38 1 6.9406 6.0218 3.0090
39 1 5.1263 8.9419 4.3288
40 1 8.2875 5.7017 0.9297
41 1 7.7708 4.4101 -0.1807
42 1 8.1007 2.1077 0.3575
43 1 9.3019 0.4491 1.7669
44 1 10.3279 1.2191 3.8968
45 1 10.1407 3.5900 4.5347
46 1 3.0907 4.8397 -1.9948
47 1 1.3365 4.9010 -1.6992
48 1 2.4629 5.6196 -0.5231
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000931939086.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:05
Heat of formation + Delta-G solvation = 69.324673 kcal
Electronic energy + Delta-G solvation = -29892.735894 eV
Core-core repulsion = 25949.236877 eV
Total energy + Delta-G solvation = -3943.499017 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.05484 -40.05513 -38.81783 -35.19791 -34.62657 -32.95769 -32.21060 -32.00377
-31.56106 -31.12078 -27.92873 -27.33908 -26.42984 -25.57566 -23.35929 -23.33616
-22.88336 -21.98798 -20.24566 -19.18369 -18.19741 -16.92699 -16.69002 -16.36359
-16.35482 -15.71894 -15.45304 -15.27099 -15.01537 -14.61669 -14.38211 -14.26441
-14.03264 -13.62435 -13.43216 -13.20731 -12.98296 -12.84469 -12.66833 -12.40513
-12.32779 -12.14517 -11.84769 -11.67330 -11.65944 -11.46572 -11.32497 -11.22134
-11.10037 -10.97555 -10.77528 -10.24685 -10.18189 -9.84837 -9.67180 -9.36071
-9.17222 -8.85107 -8.70786 -8.56686 -8.12641 -7.85054 -6.22182 -4.30342
1.27852 1.49706 2.16932 2.79650 3.07197 3.17481 3.23277 3.27511
3.30476 3.74643 4.22275 4.30654 4.57699 4.71463 4.82320 4.95985
5.01968 5.09882 5.11394 5.19279 5.23704 5.32779 5.35572 5.38095
5.42050 5.53607 5.59178 5.65743 5.76644 5.83839 5.85601 5.90145
5.99603 6.00867 6.05523 6.18077 6.18597 6.24282 6.34003 6.38408
6.54763 6.69425 6.90386 6.99398 7.16384 7.32685 7.46204 7.72175
8.00608 8.05602 8.19747 8.30788 8.71725 8.88712 9.37529 10.84583
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.006747 B = 0.004594 C = 0.002967
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4148.959227 B = 6093.542281 C = 9435.092204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.039 4.039
3 C 0.072 3.928
4 C -0.263 4.263
5 C 0.123 3.877
6 C -0.078 4.078
7 C 0.522 3.478
8 O -0.562 6.562
9 N -0.585 5.585
10 C 0.235 3.765
11 C -0.541 4.541
12 H 0.061 0.939
13 C 0.067 3.933
14 N -0.886 5.886
15 Si 0.894 3.106
16 H -0.272 1.272
17 H -0.283 1.283
18 H -0.282 1.282
19 C 0.169 3.831
20 C 0.119 3.881
21 C -0.151 4.151
22 C -0.083 4.083
23 C -0.181 4.181
24 C 0.094 3.906
25 N -0.464 5.464
26 N -0.365 5.365
27 C 0.099 3.901
28 N -0.301 5.301
29 H 0.059 0.941
30 H 0.055 0.945
31 H 0.054 0.946
32 H 0.075 0.925
33 H 0.079 0.921
34 H 0.140 0.860
35 H 0.115 0.885
36 H 0.116 0.884
37 H 0.035 0.965
38 H 0.049 0.951
39 H 0.265 0.735
40 H 0.097 0.903
41 H 0.088 0.912
42 H 0.137 0.863
43 H 0.129 0.871
44 H 0.129 0.871
45 H 0.152 0.848
46 H 0.073 0.927
47 H 0.085 0.915
48 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.161 -12.280 -2.949 12.631
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.078 4.078
3 C -0.094 4.094
4 C -0.292 4.292
5 C -0.005 4.005
6 C -0.119 4.119
7 C 0.310 3.690
8 O -0.442 6.442
9 N -0.315 5.315
10 C 0.116 3.884
11 C -0.580 4.580
12 H 0.080 0.920
13 C -0.136 4.136
14 N -0.524 5.524
15 Si 0.721 3.279
16 H -0.197 1.197
17 H -0.209 1.209
18 H -0.208 1.208
19 C 0.045 3.955
20 C -0.020 4.020
21 C -0.171 4.171
22 C -0.109 4.109
23 C -0.201 4.201
24 C -0.063 4.063
25 N -0.173 5.173
26 N -0.147 5.147
27 C -0.042 4.042
28 N -0.124 5.124
29 H 0.078 0.922
30 H 0.075 0.925
31 H 0.073 0.927
32 H 0.094 0.906
33 H 0.097 0.903
34 H 0.158 0.842
35 H 0.133 0.867
36 H 0.134 0.866
37 H 0.053 0.947
38 H 0.067 0.933
39 H 0.075 0.925
40 H 0.115 0.885
41 H 0.106 0.894
42 H 0.155 0.845
43 H 0.147 0.853
44 H 0.147 0.853
45 H 0.170 0.830
46 H 0.092 0.908
47 H 0.104 0.896
48 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -0.806 -11.252 -4.086 11.998
hybrid contribution 0.442 0.099 0.370 0.585
sum -0.363 -11.154 -3.716 11.762
Atomic orbital electron populations
1.21702 0.94748 1.01318 1.02447 1.19900 0.95945 0.89097 1.02843
1.22107 0.97390 0.96021 0.93884 1.20952 1.08386 0.93866 1.06041
1.20486 0.94831 0.95886 0.89337 1.20289 0.91176 0.99455 1.01005
1.20131 0.86717 0.80488 0.81712 1.90626 1.83603 1.36745 1.33204
1.48163 1.05348 1.36799 1.41198 1.19546 0.97848 0.85311 0.85701
1.21501 1.47569 0.95322 0.93599 0.92042 1.24927 0.95109 0.98856
0.94732 1.69936 1.47458 1.31171 1.03864 0.86511 0.78171 0.83537
0.79675 1.19665 1.20855 1.20778 1.20133 0.82239 0.97561 0.95609
1.21861 0.94112 0.93673 0.92319 1.22127 0.99378 0.93903 1.01722
1.21547 0.95527 0.99756 0.94102 1.22092 1.02305 0.97676 0.98022
1.22764 0.95337 0.89721 0.98490 1.67597 1.07217 1.38411 1.04082
1.48264 1.35515 1.09636 1.21241 1.21856 1.03639 0.81014 0.97709
1.77159 1.20505 0.91416 1.23320 0.92225 0.92550 0.92711 0.90634
0.90266 0.84226 0.86711 0.86630 0.94680 0.93311 0.92524 0.88454
0.89365 0.84470 0.85296 0.85297 0.83041 0.90819 0.89636 0.89064
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.52 9.87 37.16 0.37 -1.15 16
2 C -0.04 -0.46 6.51 -27.88 -0.18 -0.64 16
3 C 0.07 1.14 6.49 -82.40 -0.53 0.61 16
4 C -0.26 -4.44 10.64 -40.01 -0.43 -4.87 16
5 C 0.12 2.16 5.42 -82.27 -0.45 1.72 16
6 C -0.08 -1.39 4.54 -29.04 -0.13 -1.52 16
7 C 0.52 10.28 7.66 -10.99 -0.08 10.19 16
8 O -0.56 -11.89 15.57 5.56 0.09 -11.80 16
9 N -0.58 -11.76 2.44 -176.43 -0.43 -12.19 16
10 C 0.24 5.38 4.97 -5.19 -0.03 5.35 16
11 C -0.54 -13.32 9.28 -34.44 -0.32 -13.64 16
12 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16
13 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16
14 N -0.89 -23.75 13.29 55.43 0.74 -23.02 16
15 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16
16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16
17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
19 C 0.17 3.10 5.71 -5.19 -0.03 3.07 16
20 C 0.12 2.07 6.36 -82.58 -0.53 1.55 16
21 C -0.15 -2.32 9.72 -39.44 -0.38 -2.71 16
22 C -0.08 -1.07 10.18 -39.28 -0.40 -1.47 16
23 C -0.18 -2.20 10.11 -39.44 -0.40 -2.60 16
24 C 0.09 1.34 11.18 -17.55 -0.20 1.15 16
25 N -0.46 -8.21 10.27 -9.47 -0.10 -8.31 16
26 N -0.37 -6.27 4.01 -63.88 -0.26 -6.52 16
27 C 0.10 1.37 11.27 59.85 0.67 2.05 16
28 N -0.30 -5.26 12.54 33.67 0.42 -4.83 16
29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
31 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16
32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
33 H 0.08 0.81 8.12 -51.93 -0.42 0.38 16
34 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16
35 H 0.11 1.94 7.40 -51.93 -0.38 1.56 16
36 H 0.12 2.06 6.81 -51.93 -0.35 1.71 16
37 H 0.04 0.82 6.44 -51.93 -0.33 0.49 16
38 H 0.05 1.23 8.07 -51.93 -0.42 0.81 16
39 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16
40 H 0.10 1.82 8.07 -51.93 -0.42 1.41 16
41 H 0.09 1.54 7.32 -51.93 -0.38 1.16 16
42 H 0.14 2.12 8.01 -52.49 -0.42 1.70 16
43 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16
44 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16
45 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16
46 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16
47 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
48 H 0.09 1.18 6.98 -51.93 -0.36 0.82 16
LS Contribution 408.80 15.07 6.16 6.16
Total: -1.00 -31.25 408.80 -8.81 -40.06
By element:
Atomic # 1 Polarization: 14.30 SS G_CDS: -7.27 Total: 7.03 kcal
Atomic # 6 Polarization: 1.85 SS G_CDS: -3.14 Total: -1.29 kcal
Atomic # 7 Polarization: -55.24 SS G_CDS: 0.37 Total: -54.87 kcal
Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal
Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal
Total LS contribution 6.16 Total: 6.16 kcal
Total: -31.25 -8.81 -40.06 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931939086.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.381 kcal
(2) G-P(sol) polarization free energy of solvation -31.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.131 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.325 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds