Wall clock time and date at job start Sat Apr 11 2020 06:42:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50702 * 109.47084 * 2 1
4 4 C 1.39868 * 125.89922 * 125.24058 * 3 2 1
5 5 C 1.35319 * 107.92137 * 180.14153 * 4 3 2
6 6 C 1.50692 * 126.12902 * 179.90334 * 5 4 3
7 7 C 1.50703 * 109.47332 * 84.68670 * 6 5 4
8 8 O 1.21282 * 119.99906 * 359.97438 * 7 6 5
9 9 N 1.34772 * 120.00166 * 180.02562 * 7 6 5
10 10 C 1.46506 * 120.00261 * 359.97438 * 9 7 6
11 11 C 1.50699 * 109.46984 * 270.00419 * 10 9 7
12 12 H 1.08001 * 119.99815 * 359.97438 * 11 10 9
13 13 C 1.37873 * 120.00137 * 180.02562 * 11 10 9
14 14 N 1.31517 * 119.99959 * 359.97438 * 13 11 10
15 15 Si 1.86801 * 120.00188 * 179.97438 * 13 11 10
16 16 H 1.48497 * 109.47031 * 359.97438 * 15 13 11
17 17 H 1.48500 * 109.47074 * 119.99601 * 15 13 11
18 18 H 1.48504 * 109.47014 * 239.99595 * 15 13 11
19 19 C 1.46501 * 119.99994 * 179.97438 * 9 7 6
20 20 C 1.50706 * 109.46941 * 269.99872 * 19 9 7
21 21 C 1.38227 * 119.61686 * 95.02727 * 20 19 9
22 22 C 1.38627 * 119.15663 * 179.70253 * 21 20 19
23 23 C 1.38669 * 118.42388 * 0.51169 * 22 21 20
24 24 C 1.38186 * 119.16143 * 359.50231 * 23 22 21
25 25 N 1.31856 * 119.61480 * 274.99645 * 20 19 9
26 26 N 1.34945 * 107.74348 * 359.63689 * 5 4 3
27 27 C 1.46500 * 126.03987 * 180.20816 * 26 5 4
28 28 N 1.30845 * 125.89959 * 304.97446 * 3 2 1
29 29 H 1.09007 * 109.47455 * 59.99890 * 1 2 3
30 30 H 1.08998 * 109.47294 * 180.02562 * 1 2 3
31 31 H 1.09008 * 109.46880 * 300.00148 * 1 2 3
32 32 H 1.09000 * 109.47140 * 240.00021 * 2 1 3
33 33 H 1.08997 * 109.47363 * 119.99957 * 2 1 3
34 34 H 1.07996 * 126.04040 * 0.02562 * 4 3 2
35 35 H 1.09004 * 109.47295 * 324.68940 * 6 5 4
36 36 H 1.09004 * 109.47341 * 204.68870 * 6 5 4
37 37 H 1.08997 * 109.46723 * 29.99772 * 10 9 7
38 38 H 1.08997 * 109.47310 * 149.99801 * 10 9 7
39 39 H 0.97000 * 120.00071 * 180.02562 * 14 13 11
40 40 H 1.08997 * 109.47174 * 150.00085 * 19 9 7
41 41 H 1.08997 * 109.46998 * 29.99942 * 19 9 7
42 42 H 1.07998 * 120.41947 * 359.94797 * 21 20 19
43 43 H 1.08008 * 120.78691 * 180.26734 * 22 21 20
44 44 H 1.08002 * 120.42244 * 179.78749 * 23 22 21
45 45 H 1.07996 * 119.61757 * 180.25243 * 24 23 22
46 46 H 1.09007 * 109.47174 * 89.99561 * 27 26 5
47 47 H 1.08998 * 109.47889 * 209.99964 * 27 26 5
48 48 H 1.09007 * 109.46911 * 330.00489 * 27 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.9221 1.9762 0.9254
5 6 3.1214 3.2709 0.5861
6 6 4.0065 4.2528 1.3095
7 6 5.4246 4.1050 0.8215
8 8 5.6905 3.2829 -0.0296
9 7 6.3976 4.8857 1.3316
10 6 6.0766 5.8784 2.3601
11 6 5.7200 7.1863 1.7019
12 1 5.7318 7.2699 0.6252
13 6 5.3798 8.2766 2.4743
14 7 5.3660 8.1750 3.7855
15 14 4.9385 9.8980 1.6585
16 1 5.0301 9.7511 0.1836
17 1 3.5532 10.2798 2.0332
18 1 5.8819 10.9523 2.1100
19 6 7.7763 4.7417 0.8576
20 6 8.4955 3.7247 1.7059
21 6 8.5613 2.4092 1.2866
22 6 9.2306 1.4829 2.0714
23 6 9.8020 1.9140 3.2590
24 6 9.6950 3.2454 3.6134
25 7 9.0551 4.1002 2.8393
26 7 2.3903 3.5235 -0.5196
27 6 2.3152 4.8028 -1.2296
28 7 1.7153 2.3467 -0.8685
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8899
34 1 3.3693 1.4629 1.7637
35 1 3.9685 4.0553 2.3808
36 1 3.6590 5.2673 1.1145
37 1 5.2316 5.5276 2.9525
38 1 6.9406 6.0218 3.0090
39 1 5.1263 8.9419 4.3288
40 1 8.2875 5.7017 0.9297
41 1 7.7708 4.4101 -0.1807
42 1 8.1007 2.1077 0.3575
43 1 9.3019 0.4491 1.7669
44 1 10.3279 1.2191 3.8968
45 1 10.1407 3.5900 4.5347
46 1 3.0907 4.8397 -1.9948
47 1 1.3365 4.9010 -1.6992
48 1 2.4629 5.6196 -0.5231
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000931939086.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:04
Heat of formation + Delta-G solvation = 52.378171 kcal
Electronic energy + Delta-G solvation = -29893.470750 eV
Core-core repulsion = 25949.236877 eV
Total energy + Delta-G solvation = -3944.233873 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.34761 -41.30524 -40.29536 -36.84288 -35.74170 -34.72007 -33.54610 -33.28626
-32.64383 -32.38757 -29.44208 -28.98348 -27.56674 -26.98570 -24.91988 -24.33373
-24.30779 -23.21538 -21.54301 -20.51538 -19.61398 -18.68622 -18.15870 -17.76276
-17.62426 -17.04218 -16.84223 -16.55797 -16.42803 -16.09046 -15.93859 -15.33263
-15.09317 -14.82997 -14.66681 -14.38771 -14.30837 -14.14743 -14.08396 -13.96540
-13.54753 -13.41398 -13.29455 -13.07639 -13.04832 -12.76048 -12.72285 -12.58069
-12.54258 -12.26604 -12.10709 -12.02138 -11.69531 -11.39243 -10.96474 -10.78859
-10.59443 -10.37666 -10.06019 -9.91041 -9.51420 -9.42137 -8.18341 -6.33118
0.14138 0.40618 0.85352 1.41497 1.45437 1.54756 1.59122 1.67175
1.81311 2.27998 2.45185 2.99917 3.12781 3.38480 3.50253 3.59593
3.75172 3.88506 3.99040 4.04368 4.17574 4.20267 4.27339 4.27833
4.31013 4.46940 4.49028 4.52681 4.60174 4.61613 4.65989 4.77932
4.79693 4.87701 4.88630 4.92441 5.06433 5.14219 5.23941 5.26135
5.29072 5.31646 5.39831 5.62465 5.78254 5.80606 5.83590 6.06064
6.06726 6.52386 6.78802 6.80464 7.13285 7.23064 7.39991 8.87902
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.006747 B = 0.004594 C = 0.002967
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4148.959227 B = 6093.542281 C = 9435.092204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.040 4.040
3 C 0.069 3.931
4 C -0.275 4.275
5 C 0.107 3.893
6 C -0.069 4.069
7 C 0.523 3.477
8 O -0.576 6.576
9 N -0.586 5.586
10 C 0.257 3.743
11 C -0.545 4.545
12 H 0.058 0.942
13 C 0.024 3.976
14 N -0.918 5.918
15 Si 0.954 3.046
16 H -0.267 1.267
17 H -0.277 1.277
18 H -0.283 1.283
19 C 0.170 3.830
20 C 0.095 3.905
21 C -0.160 4.160
22 C -0.079 4.079
23 C -0.163 4.163
24 C 0.080 3.920
25 N -0.504 5.504
26 N -0.375 5.375
27 C 0.093 3.907
28 N -0.321 5.321
29 H 0.045 0.955
30 H 0.082 0.918
31 H 0.048 0.952
32 H 0.084 0.916
33 H 0.098 0.902
34 H 0.151 0.849
35 H 0.120 0.880
36 H 0.112 0.888
37 H 0.027 0.973
38 H 0.021 0.979
39 H 0.267 0.733
40 H 0.083 0.917
41 H 0.091 0.909
42 H 0.131 0.869
43 H 0.164 0.836
44 H 0.172 0.828
45 H 0.175 0.825
46 H 0.072 0.928
47 H 0.105 0.895
48 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.145 -14.039 -2.859 14.328
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.079 4.079
3 C -0.096 4.096
4 C -0.304 4.304
5 C -0.022 4.022
6 C -0.110 4.110
7 C 0.311 3.689
8 O -0.457 6.457
9 N -0.316 5.316
10 C 0.136 3.864
11 C -0.583 4.583
12 H 0.076 0.924
13 C -0.176 4.176
14 N -0.557 5.557
15 Si 0.780 3.220
16 H -0.191 1.191
17 H -0.202 1.202
18 H -0.209 1.209
19 C 0.046 3.954
20 C -0.043 4.043
21 C -0.181 4.181
22 C -0.105 4.105
23 C -0.183 4.183
24 C -0.077 4.077
25 N -0.214 5.214
26 N -0.156 5.156
27 C -0.048 4.048
28 N -0.144 5.144
29 H 0.065 0.935
30 H 0.101 0.899
31 H 0.067 0.933
32 H 0.102 0.898
33 H 0.117 0.883
34 H 0.169 0.831
35 H 0.138 0.862
36 H 0.130 0.870
37 H 0.045 0.955
38 H 0.039 0.961
39 H 0.076 0.924
40 H 0.101 0.899
41 H 0.109 0.891
42 H 0.149 0.851
43 H 0.182 0.818
44 H 0.189 0.811
45 H 0.192 0.808
46 H 0.091 0.909
47 H 0.124 0.876
48 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -0.787 -13.012 -4.020 13.642
hybrid contribution 0.525 0.559 0.379 0.856
sum -0.262 -12.453 -3.641 12.977
Atomic orbital electron populations
1.21656 0.93681 1.02782 1.01495 1.20096 0.96813 0.86759 1.04189
1.22755 0.96558 0.97459 0.92846 1.21260 1.08663 0.93831 1.06678
1.20529 0.95342 0.96275 0.90005 1.20176 0.90053 0.99492 1.01281
1.20378 0.87222 0.79965 0.81306 1.90606 1.83960 1.37282 1.33858
1.48095 1.06416 1.36394 1.40682 1.19093 0.96121 0.85471 0.85731
1.21685 1.47082 0.96142 0.93429 0.92398 1.25623 0.95027 1.01854
0.95129 1.70035 1.48487 1.32129 1.05087 0.85563 0.77905 0.79601
0.78957 1.19072 1.20242 1.20934 1.20121 0.81434 0.97630 0.96230
1.21592 0.95682 0.94156 0.92853 1.22126 1.00199 0.93660 1.02087
1.21969 0.93999 1.00823 0.93667 1.22517 1.00703 0.97260 0.97778
1.23281 0.94934 0.90674 0.98843 1.67503 1.08676 1.40365 1.04840
1.48541 1.35408 1.10395 1.21292 1.22051 1.04826 0.80123 0.97753
1.77124 1.21234 0.91886 1.24172 0.93531 0.89867 0.93282 0.89800
0.88328 0.83130 0.86235 0.86971 0.95460 0.96054 0.92410 0.89895
0.89052 0.85097 0.81823 0.81060 0.80839 0.90919 0.87615 0.88593
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.64 9.87 71.98 0.71 -1.93 16
2 C -0.04 -0.86 6.51 29.85 0.19 -0.67 16
3 C 0.07 2.16 6.49 43.10 0.28 2.44 16
4 C -0.28 -9.15 10.64 21.99 0.23 -8.92 16
5 C 0.11 3.78 5.42 41.40 0.22 4.01 16
6 C -0.07 -2.49 4.54 29.10 0.13 -2.36 16
7 C 0.52 21.05 7.66 87.66 0.67 21.72 16
8 O -0.58 -24.73 15.57 -3.04 -0.05 -24.78 16
9 N -0.59 -24.41 2.44 -830.49 -2.03 -26.44 16
10 C 0.26 12.15 4.97 85.63 0.43 12.58 16
11 C -0.54 -27.38 9.28 25.60 0.24 -27.15 16
12 H 0.06 2.91 7.81 -2.91 -0.02 2.88 16
13 C 0.02 1.24 5.46 84.65 0.46 1.71 16
14 N -0.92 -49.97 13.29 21.45 0.28 -49.68 16
15 Si 0.95 40.61 29.54 68.60 2.03 42.63 16
16 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16
17 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16
18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16
19 C 0.17 6.52 5.71 85.63 0.49 7.01 16
20 C 0.10 3.38 6.36 42.55 0.27 3.65 16
21 C -0.16 -4.86 9.72 22.36 0.22 -4.64 16
22 C -0.08 -1.81 10.18 22.47 0.23 -1.58 16
23 C -0.16 -3.44 10.11 22.36 0.23 -3.22 16
24 C 0.08 2.17 11.18 84.67 0.95 3.12 16
25 N -0.50 -18.10 10.27 -183.88 -1.89 -19.99 16
26 N -0.37 -12.83 4.01 -356.03 -1.43 -14.26 16
27 C 0.09 2.56 11.27 127.77 1.44 4.00 16
28 N -0.32 -11.06 12.54 -47.38 -0.59 -11.66 16
29 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16
30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
31 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16
32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
33 H 0.10 1.76 8.12 -2.39 -0.02 1.74 16
34 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16
35 H 0.12 4.15 7.40 -2.38 -0.02 4.13 16
36 H 0.11 4.10 6.81 -2.39 -0.02 4.08 16
37 H 0.03 1.33 6.44 -2.39 -0.02 1.32 16
38 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16
39 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16
40 H 0.08 3.32 8.07 -2.39 -0.02 3.31 16
41 H 0.09 3.35 7.32 -2.39 -0.02 3.33 16
42 H 0.13 4.06 8.01 -2.91 -0.02 4.03 16
43 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16
44 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16
45 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16
46 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16
47 H 0.11 2.40 8.14 -2.39 -0.02 2.39 16
48 H 0.10 2.49 6.98 -2.38 -0.02 2.48 16
Total: -1.00 -68.15 408.80 4.67 -63.48
By element:
Atomic # 1 Polarization: 29.98 SS G_CDS: 0.95 Total: 30.93 kcal
Atomic # 6 Polarization: 2.37 SS G_CDS: 7.39 Total: 9.76 kcal
Atomic # 7 Polarization: -116.37 SS G_CDS: -5.65 Total: -122.03 kcal
Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal
Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal
Total: -68.15 4.67 -63.48 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931939086.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.858 kcal
(2) G-P(sol) polarization free energy of solvation -68.150 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.709 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds