Wall clock time and date at job start Sat Apr 11 2020 06:42:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30086 * 124.97499 * 2 1
4 4 C 1.35851 * 109.53570 * 180.02562 * 3 2 1
5 5 C 1.39726 * 133.51002 * 179.97438 * 4 3 2
6 6 C 1.37832 * 120.10582 * 180.02562 * 5 4 3
7 7 C 1.38334 * 120.73093 * 0.02562 * 6 5 4
8 8 C 1.39401 * 120.27835 * 0.16251 * 7 6 5
9 9 C 1.47524 * 120.24613 * 179.72755 * 8 7 6
10 10 O 1.21589 * 120.00034 * 133.39002 * 9 8 7
11 11 N 1.34778 * 120.00206 * 313.39222 * 9 8 7
12 12 C 1.47026 * 125.64860 * 4.85636 * 11 9 8
13 13 C 1.54318 * 107.27474 * 181.02409 * 12 11 9
14 14 C 1.55156 * 102.93952 * 22.19400 * 13 12 11
15 15 C 1.53004 * 111.00590 * 82.61325 * 14 13 12
16 16 C 1.53005 * 111.00549 * 206.42309 * 14 13 12
17 17 N 1.46502 * 109.47067 * 180.02562 * 16 14 13
18 18 C 1.36939 * 119.99609 * 179.97438 * 17 16 14
19 19 H 1.08001 * 120.00206 * 0.02562 * 18 17 16
20 20 C 1.38812 * 119.99824 * 179.97438 * 18 17 16
21 21 N 1.31613 * 120.00119 * 0.02562 * 20 18 17
22 22 Si 1.86802 * 120.00032 * 179.97438 * 20 18 17
23 23 H 1.48497 * 109.47113 * 60.00124 * 22 20 18
24 24 H 1.48497 * 109.47142 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.47159 * 300.00312 * 22 20 18
26 26 C 1.47428 * 125.64932 * 184.54986 * 11 9 8
27 27 C 1.40184 * 119.50244 * 359.62891 * 8 7 6
28 28 N 1.36115 * 124.98211 * 180.02562 * 2 1 3
29 29 H 0.97003 * 126.31370 * 359.95313 * 28 2 1
30 30 H 1.08998 * 109.47075 * 269.95759 * 1 2 3
31 31 H 1.09000 * 109.47694 * 29.96394 * 1 2 3
32 32 H 1.09008 * 109.46957 * 149.96376 * 1 2 3
33 33 H 1.07997 * 119.94446 * 0.06579 * 5 4 3
34 34 H 1.08003 * 119.63477 * 180.02562 * 6 5 4
35 35 H 1.08000 * 119.85826 * 179.97438 * 7 6 5
36 36 H 1.09003 * 109.88324 * 300.44758 * 12 11 9
37 37 H 1.09005 * 109.88099 * 61.60329 * 12 11 9
38 38 H 1.08994 * 110.71953 * 140.55459 * 13 12 11
39 39 H 1.09002 * 110.71962 * 263.65951 * 13 12 11
40 40 H 1.08998 * 109.47216 * 59.99311 * 15 14 13
41 41 H 1.08999 * 109.46833 * 179.97438 * 15 14 13
42 42 H 1.09000 * 109.46660 * 299.99832 * 15 14 13
43 43 H 1.08997 * 109.46928 * 300.00405 * 16 14 13
44 44 H 1.09000 * 109.46941 * 59.99795 * 16 14 13
45 45 H 0.96994 * 119.99886 * 0.02562 * 17 16 14
46 46 H 0.96997 * 120.00460 * 179.97438 * 21 20 18
47 47 H 1.08999 * 110.36788 * 274.74540 * 26 11 9
48 48 H 1.08993 * 110.36677 * 37.07240 * 26 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2527 1.0659 0.0000
4 6 3.5622 0.7043 -0.0006
5 6 4.7592 1.4250 -0.0013
6 6 5.9665 0.7600 -0.0023
7 6 6.0121 -0.6225 -0.0031
8 6 4.8321 -1.3647 -0.0064
9 6 4.8815 -2.8391 -0.0134
10 8 4.1791 -3.4745 0.7490
11 7 5.7053 -3.4817 -0.8647
12 6 6.6766 -2.8421 -1.7642
13 6 7.3711 -3.9656 -2.5622
14 6 6.3537 -5.1338 -2.4748
15 6 5.2562 -4.9854 -3.5304
16 6 7.0582 -6.4856 -2.6069
17 7 6.0686 -7.5624 -2.5205
18 6 6.4684 -8.8688 -2.6139
19 1 7.5133 -9.1053 -2.7509
20 6 5.5309 -9.8892 -2.5316
21 7 4.2576 -9.6010 -2.3642
22 14 6.0762 -11.6712 -2.6598
23 1 7.0344 -11.9755 -1.5669
24 1 4.8927 -12.5606 -2.5430
25 1 6.7348 -11.8942 -3.9719
26 6 5.7862 -4.9429 -1.0437
27 6 3.5981 -0.6994 -0.0009
28 7 2.2874 -1.1152 -0.0005
29 1 1.9763 -2.0340 -0.0003
30 1 -0.3633 -0.0008 1.0276
31 1 -0.3634 0.8903 -0.5133
32 1 -0.3633 -0.8897 -0.5144
33 1 4.7384 2.5047 -0.0004
34 1 6.8872 1.3247 -0.0024
35 1 6.9660 -1.1291 -0.0043
36 1 6.1608 -2.1668 -2.4469
37 1 7.4145 -2.2908 -1.1813
38 1 7.5244 -3.6645 -3.5985
39 1 8.3182 -4.2399 -2.0975
40 1 5.7049 -4.9862 -4.5238
41 1 4.5571 -5.8175 -3.4471
42 1 4.7249 -4.0468 -3.3726
43 1 7.5678 -6.5373 -3.5689
44 1 7.7866 -6.5957 -1.8035
45 1 5.1302 -7.3500 -2.3979
46 1 3.6024 -10.3140 -2.3070
47 1 6.4587 -5.3789 -0.3051
48 1 4.7952 -5.3900 -0.9664
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733441170.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:50
Heat of formation + Delta-G solvation = 48.739991 kcal
Electronic energy + Delta-G solvation = -29775.886203 eV
Core-core repulsion = 25831.494566 eV
Total energy + Delta-G solvation = -3944.391636 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 2.61 seconds
Orbital eigenvalues (eV)
-42.47086 -40.27351 -38.18500 -37.28057 -34.87727 -33.40736 -32.73386 -31.67400
-30.72704 -30.26611 -29.17403 -27.93638 -26.77761 -25.69075 -24.01176 -22.80580
-22.62124 -21.92024 -21.21016 -19.76222 -18.93145 -17.95319 -17.76736 -17.03482
-16.50552 -16.01640 -15.82287 -15.58333 -15.24295 -14.70566 -14.55604 -14.21198
-13.98489 -13.68662 -13.49715 -13.44424 -13.28451 -13.07635 -12.89736 -12.78489
-12.43706 -12.20607 -12.11223 -11.90002 -11.86015 -11.72013 -11.64870 -11.03725
-10.94057 -10.83871 -10.57533 -10.54318 -10.46052 -10.37137 -10.03196 -9.82743
-9.64605 -8.89366 -8.69528 -8.58704 -8.37713 -6.94450 -5.77910 -3.06859
0.41954 1.21640 2.25780 2.62708 2.75115 2.97314 3.43162 3.47598
3.48648 3.57801 3.79570 4.19019 4.43544 4.55328 4.59075 4.62782
4.79834 4.82794 4.91060 4.96436 5.08610 5.09899 5.15628 5.27484
5.31449 5.43094 5.46326 5.53006 5.56910 5.64570 5.69782 5.82788
5.96692 5.97189 6.04003 6.06565 6.11106 6.13970 6.16499 6.21331
6.32065 6.44586 6.51274 6.61321 6.70697 6.78969 7.05526 7.47972
7.57569 7.67902 8.05997 8.40674 9.52004 10.08714 10.43107 11.44817
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.016499 B = 0.002558 C = 0.002325
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1696.616145 B =10945.436161 C =12040.414107
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.286 3.714
3 N -0.493 5.493
4 C 0.042 3.958
5 C -0.046 4.046
6 C -0.133 4.133
7 C -0.072 4.072
8 C -0.113 4.113
9 C 0.570 3.430
10 O -0.539 6.539
11 N -0.606 5.606
12 C 0.099 3.901
13 C -0.123 4.123
14 C -0.077 4.077
15 C -0.130 4.130
16 C 0.170 3.830
17 N -0.731 5.731
18 C -0.241 4.241
19 H 0.070 0.930
20 C -0.012 4.012
21 N -0.933 5.933
22 Si 0.907 3.093
23 H -0.286 1.286
24 H -0.291 1.291
25 H -0.286 1.286
26 C 0.121 3.879
27 C 0.092 3.908
28 N -0.588 5.588
29 H 0.429 0.571
30 H 0.090 0.910
31 H 0.097 0.903
32 H 0.082 0.918
33 H 0.133 0.867
34 H 0.137 0.863
35 H 0.138 0.862
36 H 0.069 0.931
37 H 0.070 0.930
38 H 0.083 0.917
39 H 0.080 0.920
40 H 0.057 0.943
41 H 0.071 0.929
42 H 0.043 0.957
43 H 0.025 0.975
44 H 0.022 0.978
45 H 0.384 0.616
46 H 0.256 0.744
47 H 0.074 0.926
48 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.232 24.376 2.124 24.470
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.019 3.981
3 N -0.214 5.214
4 C -0.076 4.076
5 C -0.065 4.065
6 C -0.154 4.154
7 C -0.092 4.092
8 C -0.119 4.119
9 C 0.358 3.642
10 O -0.417 6.417
11 N -0.339 5.339
12 C -0.024 4.024
13 C -0.161 4.161
14 C -0.078 4.078
15 C -0.187 4.187
16 C 0.041 3.959
17 N -0.376 5.376
18 C -0.372 4.372
19 H 0.088 0.912
20 C -0.209 4.209
21 N -0.581 5.581
22 Si 0.738 3.262
23 H -0.213 1.213
24 H -0.217 1.217
25 H -0.213 1.213
26 C 0.000 4.000
27 C -0.021 4.021
28 N -0.199 5.199
29 H 0.269 0.731
30 H 0.109 0.891
31 H 0.116 0.884
32 H 0.101 0.899
33 H 0.151 0.849
34 H 0.154 0.846
35 H 0.156 0.844
36 H 0.087 0.913
37 H 0.088 0.912
38 H 0.102 0.898
39 H 0.098 0.902
40 H 0.076 0.924
41 H 0.090 0.910
42 H 0.062 0.938
43 H 0.043 0.957
44 H 0.040 0.960
45 H 0.219 0.781
46 H 0.066 0.934
47 H 0.092 0.908
48 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -0.376 24.794 2.562 24.929
hybrid contribution 0.182 -2.296 0.006 2.303
sum -0.194 22.498 2.568 22.645
Atomic orbital electron populations
1.20415 0.83903 1.04911 1.04486 1.23714 0.95876 0.80873 0.97638
1.70477 1.00511 1.27422 1.22980 1.19028 0.92363 0.89693 1.06491
1.20409 0.88970 0.99921 0.97240 1.20817 0.97624 0.93744 1.03192
1.21221 0.96502 0.94046 0.97414 1.18753 0.91107 0.92542 1.09509
1.17877 0.79615 0.86719 0.79996 1.90822 1.43387 1.68102 1.39366
1.48468 1.37749 1.08596 1.39104 1.22225 0.91310 0.96363 0.92469
1.22738 0.98515 0.94229 1.00629 1.22001 0.95813 0.95937 0.94096
1.21673 0.98070 1.01431 0.97538 1.20580 0.91993 0.85144 0.98135
1.42392 1.05784 1.01247 1.88145 1.19164 0.93017 0.82955 1.42090
0.91232 1.24733 0.95366 0.97950 1.02808 1.69639 1.00145 1.31616
1.56737 0.86268 0.77121 0.84954 0.77828 1.21277 1.21720 1.21292
1.22436 1.02769 0.78418 0.96408 1.18517 0.84698 0.94768 1.04135
1.43064 1.04747 1.10578 1.61487 0.73056 0.89125 0.88390 0.89881
0.84879 0.84565 0.84423 0.91286 0.91212 0.89808 0.90167 0.92434
0.91007 0.93790 0.95731 0.96030 0.78079 0.93438 0.90817 0.89890
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.48 10.51 36.01 0.38 -0.11 16
2 C 0.29 3.09 8.08 -154.77 -1.25 1.84 16
3 N -0.49 -6.34 11.28 -8.23 -0.09 -6.43 16
4 C 0.04 0.54 7.22 -84.71 -0.61 -0.07 16
5 C -0.05 -0.46 10.09 -39.17 -0.40 -0.85 16
6 C -0.13 -1.12 9.99 -39.69 -0.40 -1.52 16
7 C -0.07 -0.71 8.52 -39.11 -0.33 -1.05 16
8 C -0.11 -1.47 5.44 -104.95 -0.57 -2.04 16
9 C 0.57 8.80 7.40 -12.47 -0.09 8.71 16
10 O -0.54 -10.25 17.30 5.29 0.09 -10.16 16
11 N -0.61 -8.53 3.31 -171.61 -0.57 -9.10 16
12 C 0.10 1.04 5.30 -3.06 -0.02 1.02 16
13 C -0.12 -1.35 5.91 -24.90 -0.15 -1.50 16
14 C -0.08 -1.17 0.63 -152.23 -0.10 -1.27 16
15 C -0.13 -2.00 8.42 37.16 0.31 -1.69 16
16 C 0.17 3.21 5.25 -4.04 -0.02 3.19 16
17 N -0.73 -17.87 5.18 -59.90 -0.31 -18.18 16
18 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16
19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16
20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16
21 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16
22 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16
23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16
25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
26 C 0.12 1.99 5.61 -2.41 -0.01 1.98 16
27 C 0.09 1.23 6.95 -83.77 -0.58 0.65 16
28 N -0.59 -7.04 6.21 -7.81 -0.05 -7.09 16
29 H 0.43 4.79 8.96 -40.82 -0.37 4.42 16
30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16
33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16
34 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16
35 H 0.14 1.10 5.84 -52.49 -0.31 0.80 16
36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
37 H 0.07 0.58 5.95 -51.93 -0.31 0.27 16
38 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16
39 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16
40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
41 H 0.07 1.32 6.65 -51.93 -0.35 0.98 16
42 H 0.04 0.62 7.91 -51.93 -0.41 0.21 16
43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
44 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16
45 H 0.38 9.94 6.23 -40.82 -0.25 9.69 16
46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
47 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16
48 H 0.08 1.59 8.00 -51.93 -0.42 1.18 16
LS Contribution 390.82 15.07 5.89 5.89
Total: -1.00 -35.05 390.82 -10.42 -45.47
By element:
Atomic # 1 Polarization: 16.59 SS G_CDS: -7.00 Total: 9.59 kcal
Atomic # 6 Polarization: 4.14 SS G_CDS: -4.08 Total: 0.06 kcal
Atomic # 7 Polarization: -67.86 SS G_CDS: -0.30 Total: -68.15 kcal
Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal
Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -35.05 -10.42 -45.47 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733441170.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.210 kcal
(2) G-P(sol) polarization free energy of solvation -35.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.164 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.740 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.61 seconds