Wall clock time and date at job start Sat Apr 11 2020 06:42:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30086 * 124.97499 * 2 1
4 4 C 1.35851 * 109.53570 * 180.02562 * 3 2 1
5 5 C 1.39726 * 133.51002 * 179.97438 * 4 3 2
6 6 C 1.37832 * 120.10582 * 180.02562 * 5 4 3
7 7 C 1.38334 * 120.73093 * 0.02562 * 6 5 4
8 8 C 1.39401 * 120.27835 * 0.16251 * 7 6 5
9 9 C 1.47524 * 120.24613 * 179.72755 * 8 7 6
10 10 O 1.21589 * 120.00034 * 133.39002 * 9 8 7
11 11 N 1.34778 * 120.00206 * 313.39222 * 9 8 7
12 12 C 1.47026 * 125.64860 * 4.85636 * 11 9 8
13 13 C 1.54318 * 107.27474 * 181.02409 * 12 11 9
14 14 C 1.55156 * 102.93952 * 22.19400 * 13 12 11
15 15 C 1.53004 * 111.00590 * 82.61325 * 14 13 12
16 16 C 1.53005 * 111.00549 * 206.42309 * 14 13 12
17 17 N 1.46502 * 109.47067 * 180.02562 * 16 14 13
18 18 C 1.36939 * 119.99609 * 179.97438 * 17 16 14
19 19 H 1.08001 * 120.00206 * 0.02562 * 18 17 16
20 20 C 1.38812 * 119.99824 * 179.97438 * 18 17 16
21 21 N 1.31613 * 120.00119 * 0.02562 * 20 18 17
22 22 Si 1.86802 * 120.00032 * 179.97438 * 20 18 17
23 23 H 1.48497 * 109.47113 * 60.00124 * 22 20 18
24 24 H 1.48497 * 109.47142 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.47159 * 300.00312 * 22 20 18
26 26 C 1.47428 * 125.64932 * 184.54986 * 11 9 8
27 27 C 1.40184 * 119.50244 * 359.62891 * 8 7 6
28 28 N 1.36115 * 124.98211 * 180.02562 * 2 1 3
29 29 H 0.97003 * 126.31370 * 359.95313 * 28 2 1
30 30 H 1.08998 * 109.47075 * 269.95759 * 1 2 3
31 31 H 1.09000 * 109.47694 * 29.96394 * 1 2 3
32 32 H 1.09008 * 109.46957 * 149.96376 * 1 2 3
33 33 H 1.07997 * 119.94446 * 0.06579 * 5 4 3
34 34 H 1.08003 * 119.63477 * 180.02562 * 6 5 4
35 35 H 1.08000 * 119.85826 * 179.97438 * 7 6 5
36 36 H 1.09003 * 109.88324 * 300.44758 * 12 11 9
37 37 H 1.09005 * 109.88099 * 61.60329 * 12 11 9
38 38 H 1.08994 * 110.71953 * 140.55459 * 13 12 11
39 39 H 1.09002 * 110.71962 * 263.65951 * 13 12 11
40 40 H 1.08998 * 109.47216 * 59.99311 * 15 14 13
41 41 H 1.08999 * 109.46833 * 179.97438 * 15 14 13
42 42 H 1.09000 * 109.46660 * 299.99832 * 15 14 13
43 43 H 1.08997 * 109.46928 * 300.00405 * 16 14 13
44 44 H 1.09000 * 109.46941 * 59.99795 * 16 14 13
45 45 H 0.96994 * 119.99886 * 0.02562 * 17 16 14
46 46 H 0.96997 * 120.00460 * 179.97438 * 21 20 18
47 47 H 1.08999 * 110.36788 * 274.74540 * 26 11 9
48 48 H 1.08993 * 110.36677 * 37.07240 * 26 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2527 1.0659 0.0000
4 6 3.5622 0.7043 -0.0006
5 6 4.7592 1.4250 -0.0013
6 6 5.9665 0.7600 -0.0023
7 6 6.0121 -0.6225 -0.0031
8 6 4.8321 -1.3647 -0.0064
9 6 4.8815 -2.8391 -0.0134
10 8 4.1791 -3.4745 0.7490
11 7 5.7053 -3.4817 -0.8647
12 6 6.6766 -2.8421 -1.7642
13 6 7.3711 -3.9656 -2.5622
14 6 6.3537 -5.1338 -2.4748
15 6 5.2562 -4.9854 -3.5304
16 6 7.0582 -6.4856 -2.6069
17 7 6.0686 -7.5624 -2.5205
18 6 6.4684 -8.8688 -2.6139
19 1 7.5133 -9.1053 -2.7509
20 6 5.5309 -9.8892 -2.5316
21 7 4.2576 -9.6010 -2.3642
22 14 6.0762 -11.6712 -2.6598
23 1 7.0344 -11.9755 -1.5669
24 1 4.8927 -12.5606 -2.5430
25 1 6.7348 -11.8942 -3.9719
26 6 5.7862 -4.9429 -1.0437
27 6 3.5981 -0.6994 -0.0009
28 7 2.2874 -1.1152 -0.0005
29 1 1.9763 -2.0340 -0.0003
30 1 -0.3633 -0.0008 1.0276
31 1 -0.3634 0.8903 -0.5133
32 1 -0.3633 -0.8897 -0.5144
33 1 4.7384 2.5047 -0.0004
34 1 6.8872 1.3247 -0.0024
35 1 6.9660 -1.1291 -0.0043
36 1 6.1608 -2.1668 -2.4469
37 1 7.4145 -2.2908 -1.1813
38 1 7.5244 -3.6645 -3.5985
39 1 8.3182 -4.2399 -2.0975
40 1 5.7049 -4.9862 -4.5238
41 1 4.5571 -5.8175 -3.4471
42 1 4.7249 -4.0468 -3.3726
43 1 7.5678 -6.5373 -3.5689
44 1 7.7866 -6.5957 -1.8035
45 1 5.1302 -7.3500 -2.3979
46 1 3.6024 -10.3140 -2.3070
47 1 6.4587 -5.3789 -0.3051
48 1 4.7952 -5.3900 -0.9664
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733441170.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:49
Heat of formation + Delta-G solvation = 25.338823 kcal
Electronic energy + Delta-G solvation = -29776.900954 eV
Core-core repulsion = 25831.494566 eV
Total energy + Delta-G solvation = -3945.406387 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-43.30454 -41.41626 -39.37734 -38.16196 -36.52766 -34.50989 -34.12522 -32.41598
-32.25311 -31.25816 -30.39456 -28.64081 -28.05880 -27.31054 -25.43286 -24.06635
-23.53198 -23.05403 -22.00979 -20.79477 -20.24742 -19.29613 -18.76401 -18.45303
-17.57507 -17.18329 -16.69178 -16.58707 -16.45111 -16.17075 -15.63303 -15.51824
-15.27974 -15.11556 -14.77875 -14.50676 -14.21550 -14.05062 -13.88592 -13.67087
-13.60876 -13.39165 -13.05768 -13.03279 -12.96394 -12.80790 -12.72109 -12.68730
-12.54064 -12.21885 -12.04807 -11.84124 -11.70550 -11.55056 -11.52396 -11.40453
-10.96297 -10.90012 -9.80238 -9.43517 -9.22057 -8.98710 -7.94900 -5.23185
-0.40525 0.41207 1.31503 1.46036 1.49171 1.55117 1.68216 1.85046
1.91310 2.55639 2.75318 3.07898 3.22704 3.38835 3.50220 3.56721
3.76458 3.81659 3.91873 4.11800 4.16119 4.19844 4.25794 4.31994
4.35619 4.36192 4.52926 4.60296 4.64563 4.67123 4.74699 4.78912
4.88243 4.91316 4.95125 5.00345 5.04616 5.07438 5.12637 5.21143
5.28577 5.29719 5.36080 5.41249 5.44243 5.50184 5.78710 6.21937
6.26884 6.38220 6.73861 6.90232 7.33504 8.10699 8.32146 9.28683
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.016499 B = 0.002558 C = 0.002325
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1696.616145 B =10945.436161 C =12040.414107
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.283 3.717
3 N -0.519 5.519
4 C 0.019 3.981
5 C -0.047 4.047
6 C -0.118 4.118
7 C -0.060 4.060
8 C -0.137 4.137
9 C 0.566 3.434
10 O -0.590 6.590
11 N -0.603 5.603
12 C 0.095 3.905
13 C -0.110 4.110
14 C -0.071 4.071
15 C -0.121 4.121
16 C 0.167 3.833
17 N -0.745 5.745
18 C -0.242 4.242
19 H 0.079 0.921
20 C -0.078 4.078
21 N -0.972 5.972
22 Si 0.973 3.027
23 H -0.279 1.279
24 H -0.299 1.299
25 H -0.275 1.275
26 C 0.126 3.874
27 C 0.064 3.936
28 N -0.596 5.596
29 H 0.427 0.573
30 H 0.104 0.896
31 H 0.108 0.892
32 H 0.097 0.903
33 H 0.155 0.845
34 H 0.180 0.820
35 H 0.162 0.838
36 H 0.083 0.917
37 H 0.104 0.896
38 H 0.110 0.890
39 H 0.095 0.905
40 H 0.072 0.928
41 H 0.030 0.970
42 H 0.055 0.945
43 H 0.035 0.965
44 H 0.025 0.975
45 H 0.373 0.627
46 H 0.249 0.751
47 H 0.060 0.940
48 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.032 26.868 1.256 27.068
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.016 3.984
3 N -0.241 5.241
4 C -0.099 4.099
5 C -0.067 4.067
6 C -0.138 4.138
7 C -0.079 4.079
8 C -0.143 4.143
9 C 0.357 3.643
10 O -0.472 6.472
11 N -0.334 5.334
12 C -0.026 4.026
13 C -0.148 4.148
14 C -0.072 4.072
15 C -0.179 4.179
16 C 0.041 3.959
17 N -0.388 5.388
18 C -0.374 4.374
19 H 0.097 0.903
20 C -0.270 4.270
21 N -0.623 5.623
22 Si 0.802 3.198
23 H -0.205 1.205
24 H -0.225 1.225
25 H -0.201 1.201
26 C 0.003 3.997
27 C -0.049 4.049
28 N -0.207 5.207
29 H 0.267 0.733
30 H 0.122 0.878
31 H 0.127 0.873
32 H 0.116 0.884
33 H 0.172 0.828
34 H 0.197 0.803
35 H 0.179 0.821
36 H 0.101 0.899
37 H 0.122 0.878
38 H 0.128 0.872
39 H 0.114 0.886
40 H 0.091 0.909
41 H 0.050 0.950
42 H 0.074 0.926
43 H 0.053 0.947
44 H 0.043 0.957
45 H 0.206 0.794
46 H 0.058 0.942
47 H 0.079 0.921
48 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 2.501 27.335 1.661 27.499
hybrid contribution -0.640 -2.979 0.291 3.061
sum 1.861 24.355 1.952 24.504
Atomic orbital electron populations
1.20611 0.81041 1.06136 1.05692 1.24517 0.97404 0.80182 0.96252
1.70477 1.00968 1.28225 1.24392 1.19514 0.93271 0.89757 1.07361
1.20849 0.88576 1.01110 0.96151 1.21263 0.98602 0.93117 1.00792
1.21576 0.96137 0.94800 0.95420 1.18705 0.92356 0.90770 1.12457
1.18379 0.78815 0.87881 0.79263 1.90782 1.45433 1.69410 1.41583
1.48498 1.38203 1.07502 1.39194 1.22539 0.91217 0.96327 0.92489
1.22768 0.97563 0.91832 1.02649 1.21865 0.96717 0.95819 0.92788
1.21571 0.97555 1.00281 0.98464 1.20769 0.91235 0.85520 0.98419
1.42638 1.06350 1.01827 1.87969 1.19627 0.93338 0.84385 1.40000
0.90315 1.25572 0.95494 1.02145 1.03833 1.69819 1.01258 1.32329
1.58924 0.85214 0.76405 0.79916 0.78248 1.20489 1.22539 1.20114
1.22161 1.00115 0.80147 0.97248 1.18856 0.85229 0.95474 1.05321
1.43207 1.04926 1.10790 1.61795 0.73297 0.87790 0.87314 0.88417
0.82777 0.80251 0.82051 0.89861 0.87794 0.87156 0.88638 0.90908
0.95046 0.92624 0.94664 0.95676 0.79439 0.94188 0.92137 0.94143
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.91 10.51 71.24 0.75 -0.16 16
2 C 0.28 6.22 8.08 137.90 1.11 7.33 16
3 N -0.52 -13.31 11.28 -179.96 -2.03 -15.34 16
4 C 0.02 0.47 7.22 39.41 0.28 0.75 16
5 C -0.05 -0.83 10.09 22.53 0.23 -0.60 16
6 C -0.12 -1.49 9.99 22.20 0.22 -1.27 16
7 C -0.06 -0.99 8.52 22.57 0.19 -0.80 16
8 C -0.14 -3.47 5.44 -20.08 -0.11 -3.58 16
9 C 0.57 17.89 7.40 86.69 0.64 18.53 16
10 O -0.59 -24.02 17.30 -4.00 -0.07 -24.09 16
11 N -0.60 -16.67 3.31 -815.10 -2.70 -19.37 16
12 C 0.10 1.67 5.30 86.73 0.46 2.13 16
13 C -0.11 -2.02 5.91 31.78 0.19 -1.84 16
14 C -0.07 -2.09 0.63 -50.71 -0.03 -2.12 16
15 C -0.12 -3.73 8.42 71.98 0.61 -3.12 16
16 C 0.17 6.23 5.25 86.38 0.45 6.68 16
17 N -0.74 -37.32 5.18 -343.44 -1.78 -39.10 16
18 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16
19 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16
20 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16
21 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16
22 Si 0.97 46.55 29.55 68.60 2.03 48.58 16
23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16
24 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16
25 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16
26 C 0.13 4.29 5.61 86.93 0.49 4.78 16
27 C 0.06 1.73 6.95 39.26 0.27 2.00 16
28 N -0.60 -15.02 6.21 -178.62 -1.11 -16.13 16
29 H 0.43 10.50 8.96 -92.71 -0.83 9.67 16
30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16
31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16
32 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16
33 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16
34 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16
35 H 0.16 1.81 5.84 -2.91 -0.02 1.79 16
36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
37 H 0.10 1.17 5.95 -2.38 -0.01 1.16 16
38 H 0.11 1.54 8.04 -2.39 -0.02 1.52 16
39 H 0.10 1.53 8.04 -2.39 -0.02 1.51 16
40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
41 H 0.03 1.21 6.65 -2.39 -0.02 1.19 16
42 H 0.05 1.55 7.91 -2.39 -0.02 1.53 16
43 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16
44 H 0.03 0.94 8.07 -2.39 -0.02 0.92 16
45 H 0.37 20.33 6.23 -92.71 -0.58 19.75 16
46 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16
47 H 0.06 2.18 7.99 -2.39 -0.02 2.16 16
48 H 0.04 1.70 8.00 -2.39 -0.02 1.68 16
Total: -1.00 -81.53 390.82 1.28 -80.25
By element:
Atomic # 1 Polarization: 33.99 SS G_CDS: -0.41 Total: 33.58 kcal
Atomic # 6 Polarization: 4.99 SS G_CDS: 7.06 Total: 12.06 kcal
Atomic # 7 Polarization: -143.04 SS G_CDS: -7.33 Total: -150.38 kcal
Atomic # 8 Polarization: -24.02 SS G_CDS: -0.07 Total: -24.09 kcal
Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal
Total: -81.53 1.28 -80.25 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733441170.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.586 kcal
(2) G-P(sol) polarization free energy of solvation -81.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.056 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.247 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds