Wall clock time and date at job start Sat Apr 11 2020 06:43:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50704 * 109.46740 * 2 1
4 4 C 1.38260 * 120.00024 * 94.07972 * 3 2 1
5 5 C 1.38213 * 120.00125 * 180.02562 * 4 3 2
6 6 C 1.38261 * 119.99759 * 359.94921 * 5 4 3
7 7 C 1.38208 * 120.00359 * 0.02562 * 6 5 4
8 8 C 1.38215 * 120.00123 * 273.79886 * 3 2 1
9 9 C 1.50701 * 119.99803 * 0.02562 * 8 3 2
10 10 H 1.08995 * 109.47118 * 34.44788 * 9 8 3
11 11 C 1.53001 * 109.46902 * 274.44790 * 9 8 3
12 12 N 1.46497 * 109.47185 * 184.08248 * 11 9 8
13 13 C 1.34781 * 119.99846 * 180.02562 * 12 11 9
14 14 O 1.21276 * 119.99992 * 0.02562 * 13 12 11
15 15 C 1.50699 * 119.99788 * 180.02562 * 13 12 11
16 16 N 1.46498 * 109.47000 * 180.02562 * 15 13 12
17 17 C 1.36884 * 126.40163 * 90.00075 * 16 15 13
18 18 C 1.34669 * 106.81757 * 180.02562 * 17 16 15
19 19 N 1.34128 * 108.01864 * 359.97438 * 18 17 16
20 20 C 1.30500 * 109.25802 * 359.73131 * 19 18 17
21 21 N 1.46501 * 109.47173 * 154.45340 * 9 8 3
22 22 C 1.36937 * 119.99949 * 274.99855 * 21 9 8
23 23 H 1.08006 * 119.99758 * 359.97438 * 22 21 9
24 24 C 1.38803 * 120.00062 * 180.02562 * 22 21 9
25 25 N 1.31617 * 120.00319 * 359.97438 * 24 22 21
26 26 Si 1.86805 * 119.99854 * 179.97438 * 24 22 21
27 27 H 1.48500 * 109.46972 * 90.00126 * 26 24 22
28 28 H 1.48497 * 109.47152 * 209.99610 * 26 24 22
29 29 H 1.48500 * 109.47257 * 329.99718 * 26 24 22
30 30 H 1.08998 * 109.47408 * 54.59594 * 1 2 3
31 31 H 1.09003 * 109.46968 * 174.59543 * 1 2 3
32 32 H 1.09003 * 109.47466 * 294.59442 * 1 2 3
33 33 H 1.09003 * 109.47469 * 119.99653 * 2 1 3
34 34 H 1.08999 * 109.47455 * 240.00637 * 2 1 3
35 35 H 1.07997 * 119.99844 * 359.97230 * 4 3 2
36 36 H 1.07993 * 120.00146 * 179.97438 * 5 4 3
37 37 H 1.08002 * 119.99838 * 180.02562 * 6 5 4
38 38 H 1.07998 * 120.00279 * 180.02562 * 7 6 5
39 39 H 1.09000 * 109.47128 * 304.08945 * 11 9 8
40 40 H 1.09004 * 109.47039 * 64.08198 * 11 9 8
41 41 H 0.97003 * 120.00060 * 0.02562 * 12 11 9
42 42 H 1.09009 * 109.47023 * 300.00014 * 15 13 12
43 43 H 1.09004 * 109.47571 * 59.99713 * 15 13 12
44 44 H 1.07998 * 126.58959 * 359.96235 * 17 16 15
45 45 H 1.07995 * 125.98793 * 179.97438 * 18 17 16
46 46 H 1.08004 * 125.64521 * 180.29160 * 20 19 18
47 47 H 0.96997 * 120.00151 * 94.99518 * 21 9 8
48 48 H 0.97004 * 120.00111 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 6 2.3429 2.0443 1.1943
5 6 2.8030 3.3476 1.1944
6 6 2.9536 4.0275 0.0000
7 6 2.6435 3.4043 -1.1940
8 6 2.1878 2.0989 -1.1943
9 6 1.8546 1.4175 -2.4965
10 1 1.0092 0.7455 -2.3490
11 6 3.0658 0.6155 -2.9770
12 7 2.7762 0.0327 -4.2894
13 6 3.7044 -0.7205 -4.9119
14 8 4.7792 -0.9162 -4.3853
15 6 3.4067 -1.3196 -6.2623
16 7 4.5660 -2.0885 -6.7217
17 6 4.8048 -3.4159 -6.4877
18 6 5.9746 -3.7126 -7.0853
19 7 6.4371 -2.5970 -7.6688
20 6 5.5955 -1.6216 -7.4603
21 7 1.5073 2.4261 -3.5007
22 6 0.2268 2.9055 -3.5752
23 1 -0.5273 2.5396 -2.8940
24 6 -0.1024 3.8608 -4.5270
25 7 0.8164 4.3063 -5.3574
26 14 -1.8495 4.5141 -4.6291
27 1 -1.9855 5.7030 -3.7497
28 1 -2.1531 4.8982 -6.0310
29 1 -2.7985 3.4607 -4.1878
30 1 -0.3634 0.5953 -0.8376
31 1 -0.3633 -1.0231 -0.0968
32 1 -0.3634 0.4277 0.9344
33 1 1.8934 -0.5138 0.8900
34 1 1.8933 -0.5137 -0.8900
35 1 2.2252 1.5131 2.1273
36 1 3.0453 3.8346 2.1273
37 1 3.3135 5.0458 0.0000
38 1 2.7615 3.9353 -2.1269
39 1 3.9303 1.2748 -3.0548
40 1 3.2796 -0.1814 -2.2647
41 1 1.9163 0.1889 -4.7104
42 1 2.5417 -1.9784 -6.1848
43 1 3.1936 -0.5224 -6.9745
44 1 4.1765 -4.0945 -5.9300
45 1 6.4559 -4.6793 -7.0933
46 1 5.7058 -0.6081 -7.8169
47 1 2.1845 2.7545 -4.1126
48 1 0.5864 4.9741 -6.0223
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733519751.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:01
Heat of formation + Delta-G solvation = 63.244395 kcal
Electronic energy + Delta-G solvation = -29667.951758 eV
Core-core repulsion = 25724.189080 eV
Total energy + Delta-G solvation = -3943.762678 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 2.86 seconds
Orbital eigenvalues (eV)
-42.03640 -39.77404 -39.11467 -36.08033 -33.95824 -33.93788 -33.77567 -31.98650
-29.67433 -29.51055 -29.10623 -28.61756 -26.79552 -24.04469 -23.45222 -22.94440
-21.36977 -21.31782 -20.61515 -20.41421 -19.79476 -17.85883 -17.40655 -17.24041
-16.09909 -15.86411 -15.53320 -15.34128 -14.84439 -14.63476 -14.35197 -14.23047
-13.85799 -13.64823 -13.54584 -13.44258 -13.31234 -13.18079 -13.07995 -12.90140
-12.70657 -12.54067 -12.13140 -11.84354 -11.54108 -11.19304 -11.04573 -10.95807
-10.89751 -10.54457 -10.39274 -10.30202 -10.21869 -9.98294 -9.87321 -9.45903
-9.17026 -8.90728 -8.47395 -8.31197 -8.14851 -7.24726 -5.97627 -3.29564
1.76950 1.88546 2.01045 2.56003 2.62680 3.22579 3.30227 3.36598
3.38256 3.40150 4.20566 4.40503 4.55005 4.67413 4.75910 4.86821
4.89281 5.01880 5.12327 5.21622 5.34049 5.35846 5.42246 5.43261
5.51364 5.54209 5.63125 5.68558 5.73791 5.80052 5.90797 5.98093
5.98379 6.12821 6.23268 6.25828 6.32842 6.39674 6.52408 6.58253
6.62514 6.73803 6.90699 7.03216 7.12415 7.24498 7.50051 7.54423
7.60772 8.09748 8.18391 8.23201 9.31879 9.80790 10.17603 11.23508
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.008499 B = 0.003464 C = 0.002779
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3293.640282 B = 8081.808124 C =10074.015068
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.084 4.084
3 C -0.085 4.085
4 C -0.130 4.130
5 C -0.129 4.129
6 C -0.134 4.134
7 C -0.077 4.077
8 C -0.085 4.085
9 C 0.198 3.802
10 H 0.071 0.929
11 C 0.121 3.879
12 N -0.706 5.706
13 C 0.493 3.507
14 O -0.533 6.533
15 C 0.084 3.916
16 N -0.442 5.442
17 C -0.048 4.048
18 C -0.033 4.033
19 N -0.498 5.498
20 C 0.195 3.805
21 N -0.715 5.715
22 C -0.244 4.244
23 H 0.071 0.929
24 C -0.003 4.003
25 N -0.928 5.928
26 Si 0.904 3.096
27 H -0.289 1.289
28 H -0.291 1.291
29 H -0.281 1.281
30 H 0.064 0.936
31 H 0.052 0.948
32 H 0.052 0.948
33 H 0.064 0.936
34 H 0.071 0.929
35 H 0.111 0.889
36 H 0.111 0.889
37 H 0.113 0.887
38 H 0.131 0.869
39 H 0.067 0.933
40 H 0.068 0.932
41 H 0.412 0.588
42 H 0.121 0.879
43 H 0.128 0.872
44 H 0.171 0.829
45 H 0.167 0.833
46 H 0.203 0.797
47 H 0.386 0.614
48 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.787 -10.811 4.579 11.876
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.122 4.122
3 C -0.085 4.085
4 C -0.148 4.148
5 C -0.148 4.148
6 C -0.152 4.152
7 C -0.095 4.095
8 C -0.089 4.089
9 C 0.087 3.913
10 H 0.089 0.911
11 C -0.003 4.003
12 N -0.359 5.359
13 C 0.276 3.724
14 O -0.410 6.410
15 C -0.042 4.042
16 N -0.125 5.125
17 C -0.180 4.180
18 C -0.181 4.181
19 N -0.216 5.216
20 C -0.088 4.088
21 N -0.356 5.356
22 C -0.375 4.375
23 H 0.089 0.911
24 C -0.200 4.200
25 N -0.575 5.575
26 Si 0.735 3.265
27 H -0.217 1.217
28 H -0.218 1.218
29 H -0.207 1.207
30 H 0.083 0.917
31 H 0.071 0.929
32 H 0.071 0.929
33 H 0.083 0.917
34 H 0.089 0.911
35 H 0.129 0.871
36 H 0.129 0.871
37 H 0.131 0.869
38 H 0.149 0.851
39 H 0.085 0.915
40 H 0.086 0.914
41 H 0.249 0.751
42 H 0.139 0.861
43 H 0.145 0.855
44 H 0.188 0.812
45 H 0.184 0.816
46 H 0.219 0.781
47 H 0.221 0.779
48 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 2.976 -10.772 4.540 12.063
hybrid contribution -2.033 0.946 0.283 2.260
sum 0.943 -9.826 4.823 10.987
Atomic orbital electron populations
1.21756 0.94865 1.01347 1.02502 1.20544 0.96200 0.93168 1.02245
1.19725 0.99925 0.95974 0.92919 1.20844 1.01640 0.95299 0.96985
1.20977 1.01206 0.94973 0.97607 1.21126 1.01540 0.99637 0.92862
1.21140 0.95663 0.94426 0.98278 1.20793 0.97617 0.95050 0.95442
1.19488 0.94176 0.90745 0.86908 0.91144 1.21633 0.98774 0.96736
0.83196 1.45894 1.18611 1.50553 1.20848 1.20613 0.84958 0.79762
0.87061 1.90772 1.23710 1.60014 1.66467 1.21725 0.88357 0.98224
0.95935 1.45007 1.18760 1.08967 1.39727 1.22646 1.02064 0.85314
1.08003 1.22213 0.95109 0.98175 1.02554 1.70276 1.27856 0.99527
1.23946 1.24978 0.85307 1.00458 0.98038 1.42459 1.10194 1.46228
1.36768 1.19149 0.86642 1.18096 1.13590 0.91138 1.24698 0.97581
0.99366 0.98359 1.69645 1.32343 1.33403 1.22123 0.86255 0.84342
0.79056 0.76884 1.21659 1.21760 1.20707 0.91735 0.92862 0.92920
0.91727 0.91078 0.87085 0.87096 0.86896 0.85097 0.91470 0.91386
0.75091 0.86100 0.85451 0.81215 0.81566 0.78064 0.77899 0.93315
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.80 9.67 37.15 0.36 -1.44 16
2 C -0.08 -1.06 5.38 -27.88 -0.15 -1.21 16
3 C -0.08 -1.27 5.13 -104.62 -0.54 -1.81 16
4 C -0.13 -1.84 9.69 -39.58 -0.38 -2.23 16
5 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16
6 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16
7 C -0.08 -1.39 9.32 -39.58 -0.37 -1.76 16
8 C -0.09 -1.45 5.02 -104.62 -0.53 -1.97 16
9 C 0.20 3.30 1.96 -69.08 -0.14 3.17 16
10 H 0.07 1.17 5.71 -51.93 -0.30 0.87 16
11 C 0.12 1.85 5.07 -4.04 -0.02 1.83 16
12 N -0.71 -9.58 5.39 -60.29 -0.33 -9.90 16
13 C 0.49 6.72 7.90 -10.98 -0.09 6.64 16
14 O -0.53 -9.55 16.43 5.56 0.09 -9.46 16
15 C 0.08 0.83 6.63 -5.20 -0.03 0.80 16
16 N -0.44 -5.34 2.24 -119.86 -0.27 -5.61 16
17 C -0.05 -0.56 11.58 -16.56 -0.19 -0.75 16
18 C -0.03 -0.43 11.87 -17.81 -0.21 -0.64 16
19 N -0.50 -7.49 11.25 -14.67 -0.16 -7.65 16
20 C 0.19 2.58 12.56 -90.38 -1.14 1.45 16
21 N -0.72 -14.67 3.35 -54.55 -0.18 -14.85 16
22 C -0.24 -5.79 9.92 -15.06 -0.15 -5.94 16
23 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16
24 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16
25 N -0.93 -24.83 13.06 55.49 0.72 -24.11 16
26 Si 0.90 20.51 29.55 -169.99 -5.02 15.49 16
27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
30 H 0.06 0.91 7.06 -51.93 -0.37 0.55 16
31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16
34 H 0.07 0.88 5.59 -51.93 -0.29 0.59 16
35 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16
36 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16
37 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16
38 H 0.13 2.63 7.27 -52.49 -0.38 2.25 16
39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
40 H 0.07 1.01 6.81 -51.93 -0.35 0.65 16
41 H 0.41 5.37 8.17 -40.82 -0.33 5.04 16
42 H 0.12 0.84 8.14 -51.92 -0.42 0.42 16
43 H 0.13 1.02 8.14 -51.93 -0.42 0.59 16
44 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16
45 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16
46 H 0.20 2.12 8.06 -52.48 -0.42 1.70 16
47 H 0.39 8.65 7.80 -40.82 -0.32 8.33 16
48 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16
LS Contribution 401.54 15.07 6.05 6.05
Total: -1.00 -31.48 401.54 -10.52 -41.99
By element:
Atomic # 1 Polarization: 23.86 SS G_CDS: -6.96 Total: 16.90 kcal
Atomic # 6 Polarization: -4.38 SS G_CDS: -4.46 Total: -8.84 kcal
Atomic # 7 Polarization: -61.91 SS G_CDS: -0.22 Total: -62.13 kcal
Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal
Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -31.48 -10.52 -41.99 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733519751.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.237 kcal
(2) G-P(sol) polarization free energy of solvation -31.478 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.759 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.244 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.86 seconds