Wall clock time and date at job start Sat Apr 11 2020 06:42:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50704 * 109.46740 * 2 1
4 4 C 1.38260 * 120.00024 * 94.07972 * 3 2 1
5 5 C 1.38213 * 120.00125 * 180.02562 * 4 3 2
6 6 C 1.38261 * 119.99759 * 359.94921 * 5 4 3
7 7 C 1.38208 * 120.00359 * 0.02562 * 6 5 4
8 8 C 1.38215 * 120.00123 * 273.79886 * 3 2 1
9 9 C 1.50701 * 119.99803 * 0.02562 * 8 3 2
10 10 H 1.08995 * 109.47118 * 34.44788 * 9 8 3
11 11 C 1.53001 * 109.46902 * 274.44790 * 9 8 3
12 12 N 1.46497 * 109.47185 * 184.08248 * 11 9 8
13 13 C 1.34781 * 119.99846 * 180.02562 * 12 11 9
14 14 O 1.21276 * 119.99992 * 0.02562 * 13 12 11
15 15 C 1.50699 * 119.99788 * 180.02562 * 13 12 11
16 16 N 1.46498 * 109.47000 * 180.02562 * 15 13 12
17 17 C 1.36884 * 126.40163 * 90.00075 * 16 15 13
18 18 C 1.34669 * 106.81757 * 180.02562 * 17 16 15
19 19 N 1.34128 * 108.01864 * 359.97438 * 18 17 16
20 20 C 1.30500 * 109.25802 * 359.73131 * 19 18 17
21 21 N 1.46501 * 109.47173 * 154.45340 * 9 8 3
22 22 C 1.36937 * 119.99949 * 274.99855 * 21 9 8
23 23 H 1.08006 * 119.99758 * 359.97438 * 22 21 9
24 24 C 1.38803 * 120.00062 * 180.02562 * 22 21 9
25 25 N 1.31617 * 120.00319 * 359.97438 * 24 22 21
26 26 Si 1.86805 * 119.99854 * 179.97438 * 24 22 21
27 27 H 1.48500 * 109.46972 * 90.00126 * 26 24 22
28 28 H 1.48497 * 109.47152 * 209.99610 * 26 24 22
29 29 H 1.48500 * 109.47257 * 329.99718 * 26 24 22
30 30 H 1.08998 * 109.47408 * 54.59594 * 1 2 3
31 31 H 1.09003 * 109.46968 * 174.59543 * 1 2 3
32 32 H 1.09003 * 109.47466 * 294.59442 * 1 2 3
33 33 H 1.09003 * 109.47469 * 119.99653 * 2 1 3
34 34 H 1.08999 * 109.47455 * 240.00637 * 2 1 3
35 35 H 1.07997 * 119.99844 * 359.97230 * 4 3 2
36 36 H 1.07993 * 120.00146 * 179.97438 * 5 4 3
37 37 H 1.08002 * 119.99838 * 180.02562 * 6 5 4
38 38 H 1.07998 * 120.00279 * 180.02562 * 7 6 5
39 39 H 1.09000 * 109.47128 * 304.08945 * 11 9 8
40 40 H 1.09004 * 109.47039 * 64.08198 * 11 9 8
41 41 H 0.97003 * 120.00060 * 0.02562 * 12 11 9
42 42 H 1.09009 * 109.47023 * 300.00014 * 15 13 12
43 43 H 1.09004 * 109.47571 * 59.99713 * 15 13 12
44 44 H 1.07998 * 126.58959 * 359.96235 * 17 16 15
45 45 H 1.07995 * 125.98793 * 179.97438 * 18 17 16
46 46 H 1.08004 * 125.64521 * 180.29160 * 20 19 18
47 47 H 0.96997 * 120.00151 * 94.99518 * 21 9 8
48 48 H 0.97004 * 120.00111 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 6 2.3429 2.0443 1.1943
5 6 2.8030 3.3476 1.1944
6 6 2.9536 4.0275 0.0000
7 6 2.6435 3.4043 -1.1940
8 6 2.1878 2.0989 -1.1943
9 6 1.8546 1.4175 -2.4965
10 1 1.0092 0.7455 -2.3490
11 6 3.0658 0.6155 -2.9770
12 7 2.7762 0.0327 -4.2894
13 6 3.7044 -0.7205 -4.9119
14 8 4.7792 -0.9162 -4.3853
15 6 3.4067 -1.3196 -6.2623
16 7 4.5660 -2.0885 -6.7217
17 6 4.8048 -3.4159 -6.4877
18 6 5.9746 -3.7126 -7.0853
19 7 6.4371 -2.5970 -7.6688
20 6 5.5955 -1.6216 -7.4603
21 7 1.5073 2.4261 -3.5007
22 6 0.2268 2.9055 -3.5752
23 1 -0.5273 2.5396 -2.8940
24 6 -0.1024 3.8608 -4.5270
25 7 0.8164 4.3063 -5.3574
26 14 -1.8495 4.5141 -4.6291
27 1 -1.9855 5.7030 -3.7497
28 1 -2.1531 4.8982 -6.0310
29 1 -2.7985 3.4607 -4.1878
30 1 -0.3634 0.5953 -0.8376
31 1 -0.3633 -1.0231 -0.0968
32 1 -0.3634 0.4277 0.9344
33 1 1.8934 -0.5138 0.8900
34 1 1.8933 -0.5137 -0.8900
35 1 2.2252 1.5131 2.1273
36 1 3.0453 3.8346 2.1273
37 1 3.3135 5.0458 0.0000
38 1 2.7615 3.9353 -2.1269
39 1 3.9303 1.2748 -3.0548
40 1 3.2796 -0.1814 -2.2647
41 1 1.9163 0.1889 -4.7104
42 1 2.5417 -1.9784 -6.1848
43 1 3.1936 -0.5224 -6.9745
44 1 4.1765 -4.0945 -5.9300
45 1 6.4559 -4.6793 -7.0933
46 1 5.7058 -0.6081 -7.8169
47 1 2.1845 2.7545 -4.1126
48 1 0.5864 4.9741 -6.0223
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733519751.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:59
Heat of formation + Delta-G solvation = 46.314344 kcal
Electronic energy + Delta-G solvation = -29668.685900 eV
Core-core repulsion = 25724.189080 eV
Total energy + Delta-G solvation = -3944.496820 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.97078 -40.98862 -40.29371 -37.45648 -35.32586 -34.99716 -34.89913 -33.53819
-31.14065 -30.50449 -30.27783 -29.71470 -27.96645 -25.63674 -24.70665 -24.17989
-22.40439 -22.25375 -21.80583 -21.53613 -20.99159 -19.37913 -18.61019 -18.32256
-17.37046 -17.15900 -16.70092 -16.45701 -16.19748 -15.85807 -15.70285 -15.25048
-15.13391 -14.80372 -14.74615 -14.58247 -14.41404 -14.39861 -14.17708 -14.06600
-13.91576 -13.72233 -13.23032 -12.97881 -12.89676 -12.79919 -12.61748 -12.35783
-12.11919 -12.05334 -11.81679 -11.63063 -11.46164 -11.41858 -10.98714 -10.96169
-10.47945 -10.12430 -9.56717 -9.40815 -9.37686 -9.01960 -7.91018 -5.19867
0.55800 0.64666 1.05841 1.48313 1.48708 1.52087 1.57256 1.74501
2.24801 2.35760 2.57182 2.97661 3.43239 3.65583 3.77904 3.84348
3.88664 3.98419 4.02326 4.03994 4.08759 4.20163 4.26610 4.32719
4.36462 4.41882 4.58114 4.60022 4.61942 4.75944 4.78422 4.80670
4.84373 5.00850 5.12167 5.17268 5.25700 5.32024 5.36798 5.39233
5.47173 5.58399 5.71351 5.79557 5.84962 5.96715 6.19211 6.26359
6.30821 6.50904 7.12785 7.15213 7.38206 8.04940 8.31935 9.30687
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.008499 B = 0.003464 C = 0.002779
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3293.640282 B = 8081.808124 C =10074.015068
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.083 4.083
3 C -0.088 4.088
4 C -0.129 4.129
5 C -0.127 4.127
6 C -0.146 4.146
7 C -0.106 4.106
8 C -0.103 4.103
9 C 0.207 3.793
10 H 0.078 0.922
11 C 0.133 3.867
12 N -0.701 5.701
13 C 0.495 3.505
14 O -0.578 6.578
15 C 0.090 3.910
16 N -0.444 5.444
17 C -0.044 4.044
18 C -0.059 4.059
19 N -0.535 5.535
20 C 0.178 3.822
21 N -0.717 5.717
22 C -0.224 4.224
23 H 0.072 0.928
24 C -0.057 4.057
25 N -0.960 5.960
26 Si 0.954 3.046
27 H -0.300 1.300
28 H -0.299 1.299
29 H -0.269 1.269
30 H 0.038 0.962
31 H 0.073 0.927
32 H 0.056 0.944
33 H 0.088 0.912
34 H 0.070 0.930
35 H 0.143 0.857
36 H 0.142 0.858
37 H 0.122 0.878
38 H 0.097 0.903
39 H 0.042 0.958
40 H 0.078 0.922
41 H 0.417 0.583
42 H 0.160 0.840
43 H 0.149 0.851
44 H 0.201 0.799
45 H 0.184 0.816
46 H 0.218 0.782
47 H 0.375 0.625
48 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.394 -12.735 6.546 14.324
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.120 4.120
3 C -0.089 4.089
4 C -0.146 4.146
5 C -0.145 4.145
6 C -0.164 4.164
7 C -0.124 4.124
8 C -0.107 4.107
9 C 0.097 3.903
10 H 0.096 0.904
11 C 0.008 3.992
12 N -0.353 5.353
13 C 0.281 3.719
14 O -0.458 6.458
15 C -0.035 4.035
16 N -0.126 5.126
17 C -0.177 4.177
18 C -0.205 4.205
19 N -0.254 5.254
20 C -0.105 4.105
21 N -0.357 5.357
22 C -0.356 4.356
23 H 0.089 0.911
24 C -0.250 4.250
25 N -0.611 5.611
26 Si 0.785 3.215
27 H -0.228 1.228
28 H -0.226 1.226
29 H -0.194 1.194
30 H 0.058 0.942
31 H 0.092 0.908
32 H 0.076 0.924
33 H 0.106 0.894
34 H 0.089 0.911
35 H 0.161 0.839
36 H 0.159 0.841
37 H 0.140 0.860
38 H 0.116 0.884
39 H 0.061 0.939
40 H 0.096 0.904
41 H 0.255 0.745
42 H 0.177 0.823
43 H 0.167 0.833
44 H 0.218 0.782
45 H 0.201 0.799
46 H 0.235 0.765
47 H 0.208 0.792
48 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 1.552 -12.730 6.534 14.393
hybrid contribution -1.547 1.508 -0.180 2.168
sum 0.005 -11.222 6.354 12.896
Atomic orbital electron populations
1.21716 0.94471 1.02232 1.01637 1.20601 0.96383 0.91565 1.03424
1.20034 0.99204 0.97230 0.92388 1.21266 1.00180 0.95296 0.97895
1.21339 0.99953 0.95181 0.97980 1.21309 1.01768 1.00375 0.92929
1.21023 0.98167 0.95333 0.97894 1.20751 0.98814 0.94897 0.96200
1.19527 0.94842 0.89818 0.86097 0.90428 1.21390 0.97082 0.96332
0.84360 1.45827 1.18902 1.50267 1.20301 1.21241 0.83890 0.78825
0.87988 1.90757 1.25475 1.61660 1.67925 1.21925 0.88605 0.99386
0.93622 1.45156 1.18985 1.09247 1.39251 1.23173 1.01884 0.85519
1.07084 1.22671 0.96077 0.98593 1.03145 1.70230 1.29160 1.00712
1.25301 1.25362 0.85633 1.01003 0.98494 1.42466 1.08895 1.46860
1.37466 1.19363 0.87640 1.16598 1.11990 0.91051 1.25236 1.00073
1.00600 0.99107 1.69770 1.33637 1.34467 1.23176 0.85432 0.81776
0.78288 0.75962 1.22837 1.22582 1.19350 0.94250 0.90766 0.92445
0.89351 0.91121 0.83886 0.84053 0.85964 0.88441 0.93909 0.90415
0.74526 0.82287 0.83320 0.78207 0.79869 0.76549 0.79195 0.94239
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.08 9.67 71.98 0.70 -2.38 16
2 C -0.08 -1.82 5.38 29.85 0.16 -1.66 16
3 C -0.09 -2.47 5.13 -19.86 -0.10 -2.57 16
4 C -0.13 -3.26 9.69 22.27 0.22 -3.04 16
5 C -0.13 -3.35 10.05 22.27 0.22 -3.12 16
6 C -0.15 -4.62 10.05 22.27 0.22 -4.40 16
7 C -0.11 -3.94 9.32 22.27 0.21 -3.73 16
8 C -0.10 -3.49 5.02 -19.86 -0.10 -3.59 16
9 C 0.21 6.89 1.96 44.25 0.09 6.97 16
10 H 0.08 2.50 5.71 -2.39 -0.01 2.48 16
11 C 0.13 4.07 5.07 86.38 0.44 4.50 16
12 N -0.70 -18.44 5.39 -463.06 -2.50 -20.94 16
13 C 0.49 12.95 7.90 87.66 0.69 13.65 16
14 O -0.58 -20.57 16.43 -3.02 -0.05 -20.62 16
15 C 0.09 1.56 6.63 85.63 0.57 2.13 16
16 N -0.44 -10.04 2.24 -533.13 -1.19 -11.23 16
17 C -0.04 -0.95 11.58 83.09 0.96 0.01 16
18 C -0.06 -1.47 11.87 83.52 0.99 -0.48 16
19 N -0.54 -16.12 11.25 -200.31 -2.25 -18.37 16
20 C 0.18 4.64 12.56 180.26 2.26 6.91 16
21 N -0.72 -29.98 3.35 -326.50 -1.09 -31.07 16
22 C -0.22 -10.69 9.92 84.03 0.83 -9.86 16
23 H 0.07 3.37 7.83 -2.91 -0.02 3.34 16
24 C -0.06 -2.91 5.50 84.86 0.47 -2.44 16
25 N -0.96 -52.75 13.06 21.65 0.28 -52.47 16
26 Si 0.95 42.50 29.55 68.60 2.03 44.53 16
27 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16
28 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16
29 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16
30 H 0.04 1.04 7.06 -2.39 -0.02 1.02 16
31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16
32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
33 H 0.09 1.56 8.06 -2.39 -0.02 1.54 16
34 H 0.07 1.56 5.59 -2.39 -0.01 1.55 16
35 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16
36 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16
37 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16
38 H 0.10 4.21 7.27 -2.91 -0.02 4.19 16
39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16
40 H 0.08 2.23 6.81 -2.38 -0.02 2.22 16
41 H 0.42 10.37 8.17 -92.71 -0.76 9.61 16
42 H 0.16 1.58 8.14 -2.38 -0.02 1.56 16
43 H 0.15 2.01 8.14 -2.38 -0.02 1.99 16
44 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16
45 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16
46 H 0.22 4.55 8.06 -2.91 -0.02 4.53 16
47 H 0.38 17.43 7.80 -92.71 -0.72 16.71 16
48 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16
Total: -1.00 -70.38 401.54 3.56 -66.82
By element:
Atomic # 1 Polarization: 46.94 SS G_CDS: -0.49 Total: 46.45 kcal
Atomic # 6 Polarization: -11.94 SS G_CDS: 8.83 Total: -3.11 kcal
Atomic # 7 Polarization: -127.32 SS G_CDS: -6.76 Total: -134.08 kcal
Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.62 kcal
Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal
Total: -70.38 3.56 -66.82 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733519751.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.137 kcal
(2) G-P(sol) polarization free energy of solvation -70.381 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.314 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds