Wall clock time and date at job start Sat Apr 11 2020 06:43:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.46860 * 2 1
4 4 C 1.52999 * 109.47230 * 240.00387 * 2 1 3
5 5 O 1.45197 * 109.47389 * 120.00015 * 2 1 3
6 6 C 1.34232 * 117.00028 * 60.00030 * 5 2 1
7 7 O 1.20825 * 119.99672 * 0.02562 * 6 5 2
8 8 C 1.50694 * 120.00215 * 180.02562 * 6 5 2
9 9 N 1.46504 * 110.45587 * 325.70156 * 8 6 5
10 10 C 1.34777 * 120.00086 * 61.15084 * 9 8 6
11 11 O 1.21270 * 119.99970 * 0.02562 * 10 9 8
12 12 C 1.50697 * 119.99859 * 180.02562 * 10 9 8
13 13 H 1.09002 * 109.47040 * 319.99749 * 12 10 9
14 14 N 1.46903 * 109.47093 * 199.99859 * 12 10 9
15 15 C 1.52997 * 109.47656 * 79.99629 * 12 10 9
16 16 C 1.53002 * 109.47535 * 184.99593 * 15 12 10
17 17 C 1.50696 * 109.46997 * 179.97438 * 16 15 12
18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 15
19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 15
20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 16
21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 16
22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17
23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17
24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17
25 25 C 1.54510 * 110.62974 * 203.01988 * 8 6 5
26 26 C 1.54484 * 104.06090 * 241.29585 * 25 8 6
27 27 O 1.44424 * 104.80277 * 336.01670 * 26 25 8
28 28 C 1.44426 * 105.27447 * 40.51303 * 27 26 25
29 29 H 1.08997 * 109.46939 * 299.99525 * 1 2 3
30 30 H 1.08998 * 109.47540 * 60.00416 * 1 2 3
31 31 H 1.09011 * 109.47005 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.47172 * 180.02562 * 3 2 1
33 33 H 1.09000 * 109.47433 * 299.99987 * 3 2 1
34 34 H 1.09003 * 109.47318 * 60.00240 * 3 2 1
35 35 H 1.09011 * 109.46961 * 299.99823 * 4 2 1
36 36 H 1.08998 * 109.47515 * 59.99182 * 4 2 1
37 37 H 1.09001 * 109.47424 * 180.02562 * 4 2 1
38 38 H 0.97003 * 119.99547 * 241.15622 * 9 8 6
39 39 H 1.00902 * 111.00211 * 176.04412 * 14 12 10
40 40 H 1.00904 * 110.99804 * 300.00235 * 14 12 10
41 41 H 1.09005 * 109.46889 * 64.99918 * 15 12 10
42 42 H 1.09002 * 109.47401 * 305.00006 * 15 12 10
43 43 H 1.09005 * 109.46767 * 60.00250 * 16 15 12
44 44 H 1.09002 * 109.47113 * 300.00590 * 16 15 12
45 45 H 0.97001 * 119.99646 * 179.97438 * 20 19 17
46 46 H 1.09003 * 110.50698 * 359.93889 * 25 8 6
47 47 H 1.08998 * 110.51745 * 122.64919 * 25 8 6
48 48 H 1.09000 * 110.37064 * 217.18857 * 26 25 8
49 49 H 1.09005 * 110.37075 * 94.84689 * 26 25 8
50 50 H 1.08997 * 110.37239 * 200.65293 * 28 27 26
51 51 H 1.09009 * 110.37497 * 78.31692 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 8 2.0140 -0.6845 1.1855
6 6 1.6534 -1.9684 1.3378
7 8 0.9567 -2.5027 0.5078
8 6 2.1174 -2.7434 2.5441
9 7 3.4602 -2.3143 2.9429
10 6 3.6767 -1.0371 3.3152
11 8 2.7599 -0.2434 3.3204
12 6 5.0581 -0.5956 3.7249
13 1 5.5269 -1.3772 4.3228
14 7 4.9629 0.6372 4.5182
15 6 5.9016 -0.3342 2.4755
16 6 7.3379 -0.0070 2.8890
17 6 8.1688 0.2497 1.6583
18 1 7.7175 0.1864 0.6792
19 6 9.5052 0.5656 1.7824
20 7 10.2303 0.7902 0.7084
21 14 10.2858 0.6745 3.4759
22 1 10.1655 2.0632 3.9881
23 1 9.5919 -0.2564 4.4017
24 1 11.7208 0.3033 3.3843
25 6 2.0974 -4.2614 2.2566
26 6 1.0940 -4.8253 3.2870
27 8 1.0870 -3.8604 4.3615
28 6 1.1239 -2.5698 3.7141
29 1 -0.3633 0.5137 0.8900
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3633 -1.0278 -0.0005
32 1 3.1299 1.4426 -0.0005
33 1 1.6766 1.9564 -0.8900
34 1 1.6766 1.9564 0.8900
35 1 1.6767 -1.7489 -1.2493
36 1 1.6766 -0.2074 -2.1393
37 1 3.1300 -0.7216 -1.2491
38 1 4.1935 -2.9493 2.9390
39 1 5.8699 0.9185 4.8594
40 1 4.5313 1.3775 3.9855
41 1 5.4820 0.5067 1.9232
42 1 5.8989 -1.2220 1.8430
43 1 7.7575 -0.8480 3.4413
44 1 7.3406 0.8807 3.5215
45 1 11.1703 1.0128 0.7957
46 1 1.7505 -4.4532 1.2411
47 1 3.0865 -4.6926 2.4111
48 1 1.4296 -5.7963 3.6512
49 1 0.1013 -4.9074 2.8442
50 1 1.4824 -1.8081 4.4065
51 1 0.1358 -2.3060 3.3369
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001575152855.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:21
Heat of formation + Delta-G solvation = -167.291610 kcal
Electronic energy + Delta-G solvation = -32928.095670 eV
Core-core repulsion = 28634.734530 eV
Total energy + Delta-G solvation = -4293.361140 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.203 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.55836 -39.90458 -38.95140 -37.00462 -35.74581 -34.76384 -33.89376 -32.82246
-31.28964 -30.33547 -29.38644 -27.48434 -27.39928 -26.76073 -24.62989 -23.88860
-23.23259 -21.07486 -20.57851 -19.90804 -19.47823 -17.96763 -17.58130 -16.95993
-16.68586 -16.51943 -16.19829 -15.58570 -15.47929 -14.96566 -14.64270 -14.55720
-14.36485 -14.26296 -14.10291 -13.72967 -13.52170 -13.23476 -12.83018 -12.77313
-12.67598 -12.48629 -12.38610 -12.13214 -12.07607 -11.98396 -11.91922 -11.87678
-11.62371 -11.38610 -11.35159 -11.31791 -10.99926 -10.39945 -10.34195 -10.28480
-10.16376 -10.12808 -9.88700 -9.39704 -9.33812 -9.14286 -8.64171 -8.33912
-6.13879 -4.13416 1.94083 2.46833 2.89392 2.96919 3.23362 3.31917
3.32887 3.62409 3.84871 4.34234 4.35709 4.46636 4.63941 4.65721
4.72711 4.76320 4.87731 4.90247 5.03619 5.15314 5.19328 5.32594
5.40316 5.42111 5.43260 5.44393 5.45702 5.56282 5.59198 5.65127
5.69540 5.76814 5.80174 6.00684 6.11525 6.15679 6.18844 6.19985
6.31229 6.38161 6.49146 6.63796 7.06867 7.19823 7.26481 7.50787
7.64767 7.71311 7.75849 8.34353 8.42366 8.90046 9.47504 10.99331
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.011585 B = 0.003601 C = 0.003123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2416.258835 B = 7774.092395 C = 8962.539703
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.112 3.888
3 C -0.138 4.138
4 C -0.183 4.183
5 O -0.304 6.304
6 C 0.471 3.529
7 O -0.507 6.507
8 C 0.155 3.845
9 N -0.721 5.721
10 C 0.526 3.474
11 O -0.501 6.501
12 C 0.075 3.925
13 H 0.096 0.904
14 N -0.829 5.829
15 C -0.127 4.127
16 C -0.011 4.011
17 C -0.523 4.523
18 H 0.070 0.930
19 C 0.068 3.932
20 N -0.901 5.901
21 Si 0.880 3.120
22 H -0.276 1.276
23 H -0.265 1.265
24 H -0.287 1.287
25 C -0.152 4.152
26 C 0.046 3.954
27 O -0.363 6.363
28 C 0.055 3.945
29 H 0.061 0.939
30 H 0.068 0.932
31 H 0.079 0.921
32 H 0.069 0.931
33 H 0.074 0.926
34 H 0.068 0.932
35 H 0.079 0.921
36 H 0.069 0.931
37 H 0.064 0.936
38 H 0.408 0.592
39 H 0.350 0.650
40 H 0.348 0.652
41 H 0.061 0.939
42 H 0.060 0.940
43 H 0.018 0.982
44 H 0.011 0.989
45 H 0.264 0.736
46 H 0.108 0.892
47 H 0.096 0.904
48 H 0.101 0.899
49 H 0.067 0.933
50 H 0.119 0.881
51 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.355 -8.031 2.236 21.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.076 3.924
3 C -0.195 4.195
4 C -0.240 4.240
5 O -0.219 6.219
6 C 0.312 3.688
7 O -0.396 6.396
8 C 0.066 3.934
9 N -0.379 5.379
10 C 0.313 3.687
11 O -0.373 6.373
12 C -0.040 4.040
13 H 0.114 0.886
14 N -0.361 5.361
15 C -0.167 4.167
16 C -0.048 4.048
17 C -0.561 4.561
18 H 0.089 0.911
19 C -0.134 4.134
20 N -0.539 5.539
21 Si 0.707 3.293
22 H -0.202 1.202
23 H -0.190 1.190
24 H -0.213 1.213
25 C -0.190 4.190
26 C -0.031 4.031
27 O -0.281 6.281
28 C -0.023 4.023
29 H 0.080 0.920
30 H 0.087 0.913
31 H 0.098 0.902
32 H 0.088 0.912
33 H 0.093 0.907
34 H 0.087 0.913
35 H 0.098 0.902
36 H 0.088 0.912
37 H 0.083 0.917
38 H 0.244 0.756
39 H 0.165 0.835
40 H 0.162 0.838
41 H 0.080 0.920
42 H 0.079 0.921
43 H 0.036 0.964
44 H 0.029 0.971
45 H 0.074 0.926
46 H 0.126 0.874
47 H 0.114 0.886
48 H 0.119 0.881
49 H 0.086 0.914
50 H 0.137 0.863
51 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -20.521 -7.940 2.636 22.161
hybrid contribution 1.606 0.245 -0.500 1.700
sum -18.915 -7.696 2.137 20.532
Atomic orbital electron populations
1.22459 0.94355 1.04203 1.02653 1.22230 0.94117 0.92819 0.83205
1.21802 1.02716 0.92300 1.02727 1.22490 1.02131 1.02623 0.96748
1.86912 1.67872 1.23504 1.43576 1.23463 0.77384 0.81714 0.86202
1.90560 1.36116 1.70544 1.42378 1.21418 0.86422 0.93948 0.91633
1.46083 1.08811 1.12567 1.70393 1.20810 0.91325 0.80885 0.75672
1.90668 1.44738 1.51961 1.49954 1.21469 0.91151 0.95275 0.96125
0.88601 1.58729 1.28558 1.06559 1.42294 1.22173 0.97213 1.01936
0.95331 1.19577 0.91478 0.96059 0.97683 1.21052 0.94112 1.47879
0.93063 0.91137 1.25042 0.97232 0.94522 0.96611 1.69912 1.07752
1.47769 1.28501 0.86777 0.78590 0.78895 0.84997 1.20211 1.18954
1.21348 1.23300 1.02570 0.90035 1.03071 1.23474 0.98538 0.93847
0.87264 1.89212 1.95204 1.14990 1.28714 1.23705 0.97213 0.87583
0.93815 0.91957 0.91255 0.90235 0.91186 0.90746 0.91253 0.90217
0.91166 0.91706 0.75593 0.83484 0.83808 0.92003 0.92118 0.96400
0.97056 0.92633 0.87395 0.88562 0.88077 0.91430 0.86343 0.91186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16
2 C 0.11 1.44 1.13 -90.62 -0.10 1.33 16
3 C -0.14 -1.65 8.85 37.16 0.33 -1.32 16
4 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16
5 O -0.30 -4.45 6.33 -47.22 -0.30 -4.75 16
6 C 0.47 6.37 6.00 36.00 0.22 6.59 16
7 O -0.51 -7.02 11.09 -18.75 -0.21 -7.23 16
8 C 0.16 1.81 1.00 -131.40 -0.13 1.68 16
9 N -0.72 -8.61 5.15 -47.23 -0.24 -8.85 16
10 C 0.53 7.67 5.82 -10.99 -0.06 7.60 16
11 O -0.50 -8.26 12.22 -18.48 -0.23 -8.49 16
12 C 0.07 1.13 3.21 -68.87 -0.22 0.91 16
13 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16
14 N -0.83 -12.52 8.94 -5.65 -0.05 -12.57 16
15 C -0.13 -2.28 4.78 -26.73 -0.13 -2.41 16
16 C -0.01 -0.23 3.81 -27.88 -0.11 -0.33 16
17 C -0.52 -14.20 9.66 -34.44 -0.33 -14.53 16
18 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16
19 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16
20 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16
21 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16
22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
23 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16
24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16
25 C -0.15 -1.33 6.40 -25.16 -0.16 -1.50 16
26 C 0.05 0.38 7.63 37.94 0.29 0.67 16
27 O -0.36 -4.17 11.65 -35.23 -0.41 -4.58 16
28 C 0.05 0.66 6.45 37.93 0.24 0.90 16
29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.08 0.99 5.89 -51.92 -0.31 0.68 16
32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
35 H 0.08 1.04 5.89 -51.92 -0.31 0.74 16
36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
38 H 0.41 4.00 8.14 -40.82 -0.33 3.67 16
39 H 0.35 5.19 7.55 -39.29 -0.30 4.89 16
40 H 0.35 5.36 8.58 -39.29 -0.34 5.03 16
41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
43 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16
44 H 0.01 0.24 6.30 -51.93 -0.33 -0.09 16
45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
46 H 0.11 0.97 6.78 -51.93 -0.35 0.62 16
47 H 0.10 0.68 7.53 -51.93 -0.39 0.28 16
48 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16
49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
50 H 0.12 1.61 6.48 -51.93 -0.34 1.27 16
51 H 0.07 0.81 7.86 -51.92 -0.41 0.40 16
LS Contribution 396.70 15.07 5.98 5.98
Total: -1.00 -32.12 396.70 -7.42 -39.54
By element:
Atomic # 1 Polarization: 21.81 SS G_CDS: -8.43 Total: 13.38 kcal
Atomic # 6 Polarization: -2.63 SS G_CDS: 0.36 Total: -2.27 kcal
Atomic # 7 Polarization: -48.17 SS G_CDS: 0.48 Total: -47.69 kcal
Atomic # 8 Polarization: -23.90 SS G_CDS: -1.14 Total: -25.05 kcal
Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -32.12 -7.42 -39.54 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001575152855.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -127.750 kcal
(2) G-P(sol) polarization free energy of solvation -32.120 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.870 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) -167.292 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds