Wall clock time and date at job start Sat Apr 11 2020 06:43:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.46860 * 2 1
4 4 C 1.52999 * 109.47230 * 240.00387 * 2 1 3
5 5 O 1.45197 * 109.47389 * 120.00015 * 2 1 3
6 6 C 1.34232 * 117.00028 * 60.00030 * 5 2 1
7 7 O 1.20825 * 119.99672 * 0.02562 * 6 5 2
8 8 C 1.50694 * 120.00215 * 180.02562 * 6 5 2
9 9 N 1.46504 * 110.45587 * 325.70156 * 8 6 5
10 10 C 1.34777 * 120.00086 * 61.15084 * 9 8 6
11 11 O 1.21270 * 119.99970 * 0.02562 * 10 9 8
12 12 C 1.50697 * 119.99859 * 180.02562 * 10 9 8
13 13 H 1.09002 * 109.47040 * 319.99749 * 12 10 9
14 14 N 1.46903 * 109.47093 * 199.99859 * 12 10 9
15 15 C 1.52997 * 109.47656 * 79.99629 * 12 10 9
16 16 C 1.53002 * 109.47535 * 184.99593 * 15 12 10
17 17 C 1.50696 * 109.46997 * 179.97438 * 16 15 12
18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 15
19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 15
20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 16
21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 16
22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17
23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17
24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17
25 25 C 1.54510 * 110.62974 * 203.01988 * 8 6 5
26 26 C 1.54484 * 104.06090 * 241.29585 * 25 8 6
27 27 O 1.44424 * 104.80277 * 336.01670 * 26 25 8
28 28 C 1.44426 * 105.27447 * 40.51303 * 27 26 25
29 29 H 1.08997 * 109.46939 * 299.99525 * 1 2 3
30 30 H 1.08998 * 109.47540 * 60.00416 * 1 2 3
31 31 H 1.09011 * 109.47005 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.47172 * 180.02562 * 3 2 1
33 33 H 1.09000 * 109.47433 * 299.99987 * 3 2 1
34 34 H 1.09003 * 109.47318 * 60.00240 * 3 2 1
35 35 H 1.09011 * 109.46961 * 299.99823 * 4 2 1
36 36 H 1.08998 * 109.47515 * 59.99182 * 4 2 1
37 37 H 1.09001 * 109.47424 * 180.02562 * 4 2 1
38 38 H 0.97003 * 119.99547 * 241.15622 * 9 8 6
39 39 H 1.00902 * 111.00211 * 176.04412 * 14 12 10
40 40 H 1.00904 * 110.99804 * 300.00235 * 14 12 10
41 41 H 1.09005 * 109.46889 * 64.99918 * 15 12 10
42 42 H 1.09002 * 109.47401 * 305.00006 * 15 12 10
43 43 H 1.09005 * 109.46767 * 60.00250 * 16 15 12
44 44 H 1.09002 * 109.47113 * 300.00590 * 16 15 12
45 45 H 0.97001 * 119.99646 * 179.97438 * 20 19 17
46 46 H 1.09003 * 110.50698 * 359.93889 * 25 8 6
47 47 H 1.08998 * 110.51745 * 122.64919 * 25 8 6
48 48 H 1.09000 * 110.37064 * 217.18857 * 26 25 8
49 49 H 1.09005 * 110.37075 * 94.84689 * 26 25 8
50 50 H 1.08997 * 110.37239 * 200.65293 * 28 27 26
51 51 H 1.09009 * 110.37497 * 78.31692 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 8 2.0140 -0.6845 1.1855
6 6 1.6534 -1.9684 1.3378
7 8 0.9567 -2.5027 0.5078
8 6 2.1174 -2.7434 2.5441
9 7 3.4602 -2.3143 2.9429
10 6 3.6767 -1.0371 3.3152
11 8 2.7599 -0.2434 3.3204
12 6 5.0581 -0.5956 3.7249
13 1 5.5269 -1.3772 4.3228
14 7 4.9629 0.6372 4.5182
15 6 5.9016 -0.3342 2.4755
16 6 7.3379 -0.0070 2.8890
17 6 8.1688 0.2497 1.6583
18 1 7.7175 0.1864 0.6792
19 6 9.5052 0.5656 1.7824
20 7 10.2303 0.7902 0.7084
21 14 10.2858 0.6745 3.4759
22 1 10.1655 2.0632 3.9881
23 1 9.5919 -0.2564 4.4017
24 1 11.7208 0.3033 3.3843
25 6 2.0974 -4.2614 2.2566
26 6 1.0940 -4.8253 3.2870
27 8 1.0870 -3.8604 4.3615
28 6 1.1239 -2.5698 3.7141
29 1 -0.3633 0.5137 0.8900
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3633 -1.0278 -0.0005
32 1 3.1299 1.4426 -0.0005
33 1 1.6766 1.9564 -0.8900
34 1 1.6766 1.9564 0.8900
35 1 1.6767 -1.7489 -1.2493
36 1 1.6766 -0.2074 -2.1393
37 1 3.1300 -0.7216 -1.2491
38 1 4.1935 -2.9493 2.9390
39 1 5.8699 0.9185 4.8594
40 1 4.5313 1.3775 3.9855
41 1 5.4820 0.5067 1.9232
42 1 5.8989 -1.2220 1.8430
43 1 7.7575 -0.8480 3.4413
44 1 7.3406 0.8807 3.5215
45 1 11.1703 1.0128 0.7957
46 1 1.7505 -4.4532 1.2411
47 1 3.0865 -4.6926 2.4111
48 1 1.4296 -5.7963 3.6512
49 1 0.1013 -4.9074 2.8442
50 1 1.4824 -1.8081 4.4065
51 1 0.1358 -2.3060 3.3369
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001575152855.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:20
Heat of formation + Delta-G solvation = -190.594467 kcal
Electronic energy + Delta-G solvation = -32929.106158 eV
Core-core repulsion = 28634.734530 eV
Total energy + Delta-G solvation = -4294.371628 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.203 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.54680 -40.94531 -39.96250 -38.01529 -37.13207 -35.82756 -34.91775 -34.76871
-32.16382 -32.04511 -30.26328 -28.44057 -28.37378 -28.25601 -25.81355 -25.19611
-24.13842 -22.31263 -21.85797 -21.12246 -20.50421 -19.12579 -18.95325 -18.36562
-17.88033 -17.52892 -17.10603 -16.55741 -16.37197 -16.31447 -15.99685 -15.85608
-15.71253 -15.37991 -15.27554 -14.87967 -14.67837 -14.62043 -14.31604 -13.98391
-13.68435 -13.53456 -13.42351 -13.30084 -13.08639 -13.00310 -12.93361 -12.90931
-12.82316 -12.60568 -12.54332 -12.30653 -12.17463 -12.00505 -11.90404 -11.64720
-11.40736 -11.39019 -11.28666 -10.99180 -10.76413 -10.64522 -10.16864 -9.60642
-8.28816 -6.33969 0.91488 1.39379 1.40685 1.48051 1.51963 1.77333
1.96243 2.37100 2.82159 3.00766 3.07184 3.45206 3.55491 3.68362
3.73963 3.77490 3.78887 3.90890 3.97881 4.09181 4.14450 4.19524
4.25182 4.49181 4.53469 4.55508 4.61175 4.69192 4.71853 4.72704
4.76069 4.77918 4.79451 4.81043 4.85218 4.97158 5.03746 5.18059
5.20753 5.24441 5.38926 5.48121 5.49690 5.58342 5.64148 6.09472
6.26541 6.46108 6.53474 6.68165 6.74665 7.24970 7.30884 8.87986
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.011585 B = 0.003601 C = 0.003123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2416.258835 B = 7774.092395 C = 8962.539703
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.101 3.899
3 C -0.134 4.134
4 C -0.176 4.176
5 O -0.323 6.323
6 C 0.464 3.536
7 O -0.514 6.514
8 C 0.152 3.848
9 N -0.711 5.711
10 C 0.526 3.474
11 O -0.522 6.522
12 C 0.084 3.916
13 H 0.117 0.883
14 N -0.827 5.827
15 C -0.114 4.114
16 C -0.006 4.006
17 C -0.532 4.532
18 H 0.025 0.975
19 C 0.003 3.997
20 N -0.953 5.953
21 Si 0.952 3.048
22 H -0.268 1.268
23 H -0.236 1.236
24 H -0.289 1.289
25 C -0.146 4.146
26 C 0.044 3.956
27 O -0.376 6.376
28 C 0.061 3.939
29 H 0.059 0.941
30 H 0.090 0.910
31 H 0.068 0.932
32 H 0.048 0.952
33 H 0.099 0.901
34 H 0.063 0.937
35 H 0.070 0.930
36 H 0.090 0.910
37 H 0.048 0.952
38 H 0.419 0.581
39 H 0.354 0.646
40 H 0.346 0.654
41 H 0.041 0.959
42 H 0.059 0.941
43 H 0.031 0.969
44 H 0.023 0.977
45 H 0.265 0.735
46 H 0.106 0.894
47 H 0.118 0.882
48 H 0.128 0.872
49 H 0.074 0.926
50 H 0.101 0.899
51 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.002 -9.267 4.037 22.411
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.065 3.935
3 C -0.191 4.191
4 C -0.234 4.234
5 O -0.238 6.238
6 C 0.307 3.693
7 O -0.403 6.403
8 C 0.063 3.937
9 N -0.368 5.368
10 C 0.312 3.688
11 O -0.396 6.396
12 C -0.031 4.031
13 H 0.135 0.865
14 N -0.359 5.359
15 C -0.154 4.154
16 C -0.043 4.043
17 C -0.570 4.570
18 H 0.043 0.957
19 C -0.193 4.193
20 N -0.594 5.594
21 Si 0.775 3.225
22 H -0.193 1.193
23 H -0.159 1.159
24 H -0.215 1.215
25 C -0.184 4.184
26 C -0.032 4.032
27 O -0.294 6.294
28 C -0.017 4.017
29 H 0.078 0.922
30 H 0.109 0.891
31 H 0.087 0.913
32 H 0.068 0.932
33 H 0.118 0.882
34 H 0.082 0.918
35 H 0.089 0.911
36 H 0.109 0.891
37 H 0.067 0.933
38 H 0.258 0.742
39 H 0.169 0.831
40 H 0.159 0.841
41 H 0.060 0.940
42 H 0.078 0.922
43 H 0.049 0.951
44 H 0.041 0.959
45 H 0.074 0.926
46 H 0.125 0.875
47 H 0.136 0.864
48 H 0.146 0.854
49 H 0.092 0.908
50 H 0.119 0.881
51 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -21.186 -9.211 4.444 23.525
hybrid contribution 1.748 0.623 -1.188 2.203
sum -19.438 -8.588 3.256 21.499
Atomic orbital electron populations
1.22386 0.93132 1.03743 1.03594 1.22467 0.95132 0.92990 0.82913
1.21793 1.01314 0.92254 1.03713 1.22434 1.00999 1.02381 0.97549
1.86906 1.68321 1.24169 1.44381 1.23838 0.77298 0.81520 0.86684
1.90548 1.36418 1.70578 1.42761 1.21584 0.85876 0.95432 0.90825
1.45954 1.09551 1.11980 1.69321 1.20703 0.90843 0.81559 0.75687
1.90665 1.45255 1.52786 1.50881 1.21390 0.91132 0.95937 0.94681
0.86502 1.58749 1.28643 1.06536 1.41985 1.21966 0.95678 1.01052
0.96664 1.19505 0.92566 0.96893 0.95383 1.21426 0.94896 1.47226
0.93430 0.95652 1.26061 0.97920 0.94146 1.01223 1.70084 1.08230
1.49641 1.31455 0.85633 0.77347 0.79813 0.79694 1.19325 1.15919
1.21544 1.23360 1.04047 0.87794 1.03175 1.23703 0.98941 0.94132
0.86462 1.89199 1.95264 1.15090 1.29896 1.23524 0.97139 0.87738
0.93342 0.92229 0.89080 0.91308 0.93247 0.88242 0.91771 0.91076
0.89085 0.93317 0.74213 0.83133 0.84122 0.94033 0.92247 0.95088
0.95854 0.92588 0.87522 0.86391 0.85389 0.90789 0.88134 0.91288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.76 8.37 71.98 0.60 -3.16 16
2 C 0.10 2.56 1.13 -10.79 -0.01 2.55 16
3 C -0.13 -3.20 8.85 71.98 0.64 -2.56 16
4 C -0.18 -4.30 8.37 71.98 0.60 -3.70 16
5 O -0.32 -9.52 6.33 -43.83 -0.28 -9.80 16
6 C 0.46 12.41 6.00 71.23 0.43 12.84 16
7 O -0.51 -13.99 11.09 21.97 0.24 -13.75 16
8 C 0.15 3.37 1.00 3.87 0.00 3.37 16
9 N -0.71 -15.99 5.15 -421.72 -2.17 -18.16 16
10 C 0.53 14.82 5.82 87.66 0.51 15.33 16
11 O -0.52 -17.10 12.22 20.00 0.24 -16.86 16
12 C 0.08 2.38 3.21 44.17 0.14 2.52 16
13 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16
14 N -0.83 -23.65 8.94 -171.80 -1.54 -25.19 16
15 C -0.11 -4.02 4.78 30.59 0.15 -3.88 16
16 C -0.01 -0.25 3.81 29.85 0.11 -0.14 16
17 C -0.53 -29.34 9.66 25.60 0.25 -29.09 16
18 H 0.03 1.57 7.99 -2.91 -0.02 1.55 16
19 C 0.00 0.18 5.47 84.66 0.46 0.64 16
20 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16
21 Si 0.95 42.00 27.47 68.60 1.88 43.88 16
22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16
23 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16
24 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16
25 C -0.15 -2.25 6.40 31.61 0.20 -2.04 16
26 C 0.04 0.62 7.63 72.49 0.55 1.17 16
27 O -0.38 -7.97 11.65 -148.98 -1.74 -9.71 16
28 C 0.06 1.41 6.45 72.48 0.47 1.87 16
29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
31 H 0.07 1.67 5.89 -2.38 -0.01 1.65 16
32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16
34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16
35 H 0.07 1.85 5.89 -2.38 -0.01 1.84 16
36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16
37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16
38 H 0.42 7.31 8.14 -92.71 -0.75 6.56 16
39 H 0.35 9.64 7.55 -89.69 -0.68 8.96 16
40 H 0.35 10.39 8.58 -89.69 -0.77 9.62 16
41 H 0.04 1.62 8.14 -2.38 -0.02 1.61 16
42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
43 H 0.03 1.24 7.20 -2.38 -0.02 1.22 16
44 H 0.02 0.93 6.30 -2.39 -0.02 0.92 16
45 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16
46 H 0.11 1.72 6.78 -2.39 -0.02 1.71 16
47 H 0.12 1.29 7.53 -2.39 -0.02 1.27 16
48 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16
49 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16
50 H 0.10 2.70 6.48 -2.39 -0.02 2.69 16
51 H 0.07 1.58 7.86 -2.38 -0.02 1.56 16
Total: -1.00 -71.26 396.70 0.76 -70.50
By element:
Atomic # 1 Polarization: 43.10 SS G_CDS: -1.29 Total: 41.81 kcal
Atomic # 6 Polarization: -9.38 SS G_CDS: 5.11 Total: -4.27 kcal
Atomic # 7 Polarization: -98.40 SS G_CDS: -3.41 Total: -101.81 kcal
Atomic # 8 Polarization: -48.58 SS G_CDS: -1.53 Total: -50.11 kcal
Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.88 kcal
Total: -71.26 0.76 -70.50 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001575152855.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -120.098 kcal
(2) G-P(sol) polarization free energy of solvation -71.261 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.359 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal
(6) G-S(sol) free energy of system = (1) + (5) -190.594 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds