Wall clock time and date at job start Sat Apr 11 2020 06:45:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.36455 * 127.14034 * 2 1
4 4 N 1.38581 * 126.46952 * 359.97438 * 3 2 1
5 5 C 1.46934 * 111.00661 * 82.08542 * 4 3 2
6 6 C 1.52890 * 108.64118 * 52.06634 * 5 4 3
7 7 C 1.50734 * 109.88903 * 50.39210 * 6 5 4
8 8 C 1.38730 * 118.43097 * 163.19792 * 7 6 5
9 9 C 1.37931 * 120.43217 * 179.80545 * 8 7 6
10 10 C 1.38763 * 119.76861 * 359.97438 * 9 8 7
11 11 O 1.35905 * 120.12247 * 180.11322 * 10 9 8
12 12 C 1.38505 * 119.75080 * 0.09603 * 10 9 8
13 13 C 1.37876 * 121.64101 * 343.15772 * 7 6 5
14 14 C 1.46626 * 110.99980 * 205.00592 * 4 3 2
15 15 N 1.31212 * 107.05503 * 180.24383 * 3 2 1
16 16 N 1.28529 * 109.86342 * 359.55806 * 15 3 2
17 17 C 1.30293 * 110.04990 * 0.45533 * 16 15 3
18 18 C 1.50703 * 126.34602 * 179.69202 * 17 16 15
19 19 C 1.52999 * 109.47257 * 113.48845 * 18 17 16
20 20 C 1.52998 * 109.47052 * 233.48559 * 18 17 16
21 21 C 1.50697 * 109.46915 * 353.48493 * 18 17 16
22 22 H 1.07997 * 120.00228 * 0.02562 * 21 18 17
23 23 C 1.37884 * 119.99797 * 179.97438 * 21 18 17
24 24 N 1.31510 * 119.99773 * 0.02562 * 23 21 18
25 25 Si 1.86795 * 119.99871 * 180.02562 * 23 21 18
26 26 H 1.48505 * 109.46901 * 60.00855 * 25 23 21
27 27 H 1.48502 * 109.47390 * 180.02562 * 25 23 21
28 28 H 1.48496 * 109.47432 * 300.00795 * 25 23 21
29 29 H 1.08993 * 109.47219 * 95.33104 * 1 2 3
30 30 H 1.08998 * 109.46713 * 215.33372 * 1 2 3
31 31 H 1.09002 * 109.46598 * 335.32692 * 1 2 3
32 32 H 1.08999 * 109.51165 * 292.35794 * 5 4 3
33 33 H 1.09006 * 109.64090 * 171.84920 * 5 4 3
34 34 H 1.09001 * 109.38353 * 290.29415 * 6 5 4
35 35 H 1.08999 * 109.39305 * 170.49924 * 6 5 4
36 36 H 1.08002 * 119.78629 * 359.80338 * 8 7 6
37 37 H 1.07998 * 120.11487 * 180.02562 * 9 8 7
38 38 H 0.96700 * 113.99827 * 269.97772 * 11 10 9
39 39 H 1.07990 * 119.83520 * 179.97438 * 12 10 9
40 40 H 1.09006 * 109.29915 * 168.88947 * 14 4 3
41 41 H 1.08992 * 109.14109 * 49.40164 * 14 4 3
42 42 H 1.09000 * 109.46880 * 56.45066 * 19 18 17
43 43 H 1.08995 * 109.47280 * 176.45486 * 19 18 17
44 44 H 1.08997 * 109.47016 * 296.45303 * 19 18 17
45 45 H 1.09002 * 109.46953 * 60.00303 * 20 18 17
46 46 H 1.09000 * 109.47427 * 179.97438 * 20 18 17
47 47 H 1.08995 * 109.47569 * 300.00228 * 20 18 17
48 48 H 0.97002 * 119.99813 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2889 1.0878 0.0000
4 7 1.8978 2.4173 -0.0005
5 6 1.5675 2.8697 1.3579
6 6 2.7356 2.5296 2.2838
7 6 4.0266 3.0250 1.6838
8 6 5.1379 3.1356 2.5069
9 6 6.3411 3.5807 2.0002
10 6 6.4404 3.9195 0.6583
11 8 7.6230 4.3567 0.1509
12 6 5.3299 3.8102 -0.1622
13 6 4.1213 3.3645 0.3509
14 6 2.9399 3.2713 -0.5790
15 7 3.5212 0.6372 -0.0053
16 7 3.5162 -0.6481 0.0007
17 6 2.2906 -1.0901 0.0004
18 6 1.8621 -2.5349 -0.0001
19 6 1.1658 -2.8610 1.3227
20 6 0.8943 -2.7795 -1.1596
21 6 3.0727 -3.4177 -0.1615
22 1 4.0542 -2.9767 -0.2540
23 6 2.9274 -4.7886 -0.1901
24 7 1.7323 -5.3256 -0.0769
25 14 4.4281 -5.8829 -0.3894
26 1 5.3671 -5.6451 0.7362
27 1 4.0060 -7.3067 -0.3901
28 1 5.1042 -5.5669 -1.6732
29 1 -0.3633 -0.0955 -1.0231
30 1 -0.3633 -0.8384 0.5943
31 1 -0.3632 0.9339 0.4290
32 1 0.6672 2.3607 1.7022
33 1 1.4040 3.9474 1.3555
34 1 2.7895 1.4490 2.4163
35 1 2.5804 3.0056 3.2520
36 1 5.0604 2.8714 3.5513
37 1 7.2030 3.6644 2.6455
38 1 7.7404 5.3154 0.1973
39 1 5.4056 4.0739 -1.2067
40 1 2.5351 4.2691 -0.7483
41 1 3.2624 2.8472 -1.5298
42 1 0.3273 -2.1802 1.4693
43 1 0.8004 -3.8875 1.2976
44 1 1.8738 -2.7473 2.1436
45 1 1.3904 -2.5472 -2.1020
46 1 0.5848 -3.8246 -1.1603
47 1 0.0188 -2.1409 -1.0430
48 1 1.6300 -6.2900 -0.0974
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001646680537.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:04
Heat of formation + Delta-G solvation = 82.608859 kcal
Electronic energy + Delta-G solvation = -31174.916108 eV
Core-core repulsion = 27231.993136 eV
Total energy + Delta-G solvation = -3942.922972 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.39717 -40.33509 -38.37843 -36.12943 -35.66655 -34.07676 -32.65092 -31.43354
-30.71528 -28.83795 -28.20300 -27.17430 -25.87986 -25.26356 -24.79784 -23.51257
-22.32335 -21.75044 -21.37351 -19.57666 -19.15051 -18.12112 -16.80644 -16.24312
-16.06058 -15.85155 -15.66930 -15.19481 -14.84298 -14.81543 -14.59880 -14.06737
-13.85211 -13.53352 -13.27250 -13.12432 -13.07970 -12.75291 -12.48264 -12.36218
-12.06824 -11.88439 -11.73348 -11.49679 -11.34458 -11.07113 -10.94932 -10.79698
-10.66380 -10.62035 -10.57576 -10.15479 -10.05259 -9.93654 -9.71536 -9.43935
-9.10746 -8.73694 -8.66095 -8.37681 -8.27851 -7.81541 -6.01328 -4.06193
1.29628 1.39310 2.45909 2.80967 3.38749 3.40446 3.48062 3.62825
3.71598 3.97446 4.14949 4.46664 4.60661 4.70565 4.85333 4.88938
5.02111 5.05242 5.24168 5.28588 5.30672 5.35300 5.42716 5.48588
5.54499 5.58495 5.65915 5.71699 5.82100 5.90487 6.00294 6.06749
6.10315 6.36216 6.44696 6.49084 6.58759 6.59937 6.65009 6.67680
6.74999 6.80429 6.87096 7.14862 7.25019 7.38287 7.62366 7.64047
7.82034 7.83762 8.10974 8.33419 9.00610 9.56343 9.68974 11.02622
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013303 B = 0.003682 C = 0.003157
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2104.293333 B = 7603.660263 C = 8867.416118
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.081 3.919
2 N -0.478 5.478
3 C 0.300 3.700
4 N -0.446 5.446
5 C 0.056 3.944
6 C -0.113 4.113
7 C -0.065 4.065
8 C -0.100 4.100
9 C -0.145 4.145
10 C 0.099 3.901
11 O -0.499 6.499
12 C -0.132 4.132
13 C -0.068 4.068
14 C 0.111 3.889
15 N -0.307 5.307
16 N -0.288 5.288
17 C 0.240 3.760
18 C 0.147 3.853
19 C -0.129 4.129
20 C -0.135 4.135
21 C -0.491 4.491
22 H 0.076 0.924
23 C 0.063 3.937
24 N -0.896 5.896
25 Si 0.900 3.100
26 H -0.276 1.276
27 H -0.289 1.289
28 H -0.277 1.277
29 H 0.075 0.925
30 H 0.092 0.908
31 H 0.079 0.921
32 H 0.082 0.918
33 H 0.091 0.909
34 H 0.079 0.921
35 H 0.081 0.919
36 H 0.121 0.879
37 H 0.124 0.876
38 H 0.384 0.616
39 H 0.125 0.875
40 H 0.098 0.902
41 H 0.094 0.906
42 H 0.008 0.992
43 H 0.096 0.904
44 H 0.033 0.967
45 H 0.030 0.970
46 H 0.097 0.903
47 H 0.012 0.988
48 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.974 20.408 3.629 20.940
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.172 5.172
3 C -0.056 4.056
4 N -0.168 5.168
5 C -0.072 4.072
6 C -0.151 4.151
7 C -0.065 4.065
8 C -0.118 4.118
9 C -0.163 4.163
10 C 0.055 3.945
11 O -0.308 6.308
12 C -0.151 4.151
13 C -0.070 4.070
14 C -0.017 4.017
15 N -0.151 5.151
16 N -0.126 5.126
17 C -0.026 4.026
18 C 0.144 3.856
19 C -0.188 4.188
20 C -0.194 4.194
21 C -0.530 4.530
22 H 0.094 0.906
23 C -0.137 4.137
24 N -0.535 5.535
25 Si 0.728 3.272
26 H -0.202 1.202
27 H -0.215 1.215
28 H -0.202 1.202
29 H 0.094 0.906
30 H 0.110 0.890
31 H 0.098 0.902
32 H 0.100 0.900
33 H 0.109 0.891
34 H 0.098 0.902
35 H 0.099 0.901
36 H 0.139 0.861
37 H 0.142 0.858
38 H 0.239 0.761
39 H 0.143 0.857
40 H 0.116 0.884
41 H 0.112 0.888
42 H 0.027 0.973
43 H 0.115 0.885
44 H 0.052 0.948
45 H 0.049 0.951
46 H 0.116 0.884
47 H 0.031 0.969
48 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -1.908 19.673 3.205 20.024
hybrid contribution 0.020 -0.185 0.419 0.459
sum -1.887 19.489 3.625 19.913
Atomic orbital electron populations
1.22079 0.76602 1.03842 1.03682 1.46159 1.08171 1.06099 1.56770
1.22200 0.87347 0.87082 1.08946 1.59248 1.39650 0.97035 1.20871
1.22321 0.97553 1.01437 0.85873 1.21069 0.92559 1.02208 0.99263
1.19305 0.95389 0.98793 0.93059 1.20848 0.92037 0.99328 0.99601
1.21247 0.97929 1.02486 0.94678 1.18299 0.84855 1.00173 0.91197
1.84877 1.34946 1.27378 1.83604 1.21147 0.91568 1.02433 0.99929
1.19826 0.95531 0.97878 0.93775 1.20988 0.87023 0.96855 0.96832
1.74699 1.15782 1.04832 1.19746 1.74133 1.18016 1.00959 1.19467
1.26177 0.85557 0.92216 0.98677 1.16902 0.95784 0.79419 0.93524
1.21908 0.96918 1.03121 0.96816 1.21963 0.96049 1.03986 0.97372
1.21038 0.92885 0.90070 1.48977 0.90595 1.24857 0.96114 0.97827
0.94915 1.69771 1.21302 1.11311 1.51160 0.86509 0.82905 0.78791
0.78992 1.20176 1.21459 1.20216 0.90646 0.88994 0.90246 0.89966
0.89055 0.90244 0.90066 0.86111 0.85821 0.76142 0.85705 0.88427
0.88797 0.97302 0.88548 0.94829 0.95119 0.88420 0.96878 0.92914
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.14 9.40 59.85 0.56 1.70 16
2 N -0.48 -8.87 3.21 -121.46 -0.39 -9.26 16
3 C 0.30 5.43 5.23 -318.88 -1.67 3.76 16
4 N -0.45 -6.14 5.02 -176.18 -0.88 -7.03 16
5 C 0.06 0.62 6.00 -3.86 -0.02 0.59 16
6 C -0.11 -1.43 5.21 -27.92 -0.15 -1.57 16
7 C -0.07 -0.90 5.02 -104.56 -0.53 -1.43 16
8 C -0.10 -1.33 9.65 -39.51 -0.38 -1.71 16
9 C -0.14 -1.88 9.99 -39.50 -0.39 -2.28 16
10 C 0.10 1.32 6.70 -39.29 -0.26 1.05 16
11 O -0.50 -5.86 13.51 -19.44 -0.26 -6.13 16
12 C -0.13 -1.76 9.59 -39.33 -0.38 -2.14 16
13 C -0.07 -0.94 4.60 -104.63 -0.48 -1.42 16
14 C 0.11 1.40 5.32 -5.16 -0.03 1.37 16
15 N -0.31 -6.67 9.75 30.31 0.30 -6.38 16
16 N -0.29 -7.17 11.01 32.99 0.36 -6.80 16
17 C 0.24 5.49 6.34 -154.01 -0.98 4.52 16
18 C 0.15 3.51 0.52 -156.81 -0.08 3.42 16
19 C -0.13 -2.91 8.13 37.16 0.30 -2.61 16
20 C -0.14 -3.05 8.09 37.16 0.30 -2.75 16
21 C -0.49 -13.40 7.91 -34.44 -0.27 -13.67 16
22 H 0.08 2.21 6.96 -52.49 -0.37 1.85 16
23 C 0.06 1.69 5.15 -17.82 -0.09 1.59 16
24 N -0.90 -23.73 9.39 55.43 0.52 -23.21 16
25 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16
26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
29 H 0.07 1.00 7.64 -51.93 -0.40 0.60 16
30 H 0.09 1.29 5.27 -51.93 -0.27 1.02 16
31 H 0.08 0.88 7.25 -51.93 -0.38 0.50 16
32 H 0.08 0.84 7.28 -51.93 -0.38 0.46 16
33 H 0.09 0.78 8.04 -51.93 -0.42 0.36 16
34 H 0.08 1.30 7.30 -51.93 -0.38 0.92 16
35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
36 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16
37 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16
38 H 0.38 2.34 9.06 45.56 0.41 2.75 16
39 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16
40 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16
41 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16
42 H 0.01 0.16 5.70 -51.93 -0.30 -0.14 16
43 H 0.10 2.34 6.17 -51.93 -0.32 2.02 16
44 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16
45 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16
46 H 0.10 2.38 6.07 -51.93 -0.32 2.07 16
47 H 0.01 0.24 5.50 -51.93 -0.29 -0.05 16
48 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16
LS Contribution 370.90 15.07 5.59 5.59
Total: -1.00 -32.86 370.90 -10.23 -43.10
By element:
Atomic # 1 Polarization: 11.00 SS G_CDS: -5.90 Total: 5.10 kcal
Atomic # 6 Polarization: -7.02 SS G_CDS: -4.54 Total: -11.56 kcal
Atomic # 7 Polarization: -52.59 SS G_CDS: -0.10 Total: -52.68 kcal
Atomic # 8 Polarization: -5.86 SS G_CDS: -0.26 Total: -6.13 kcal
Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -32.86 -10.23 -43.10 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001646680537.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.704 kcal
(2) G-P(sol) polarization free energy of solvation -32.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.843 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.609 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds