Wall clock time and date at job start Sat Apr 11 2020 06:45:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.36455 * 127.14034 * 2 1
4 4 N 1.38581 * 126.46952 * 359.97438 * 3 2 1
5 5 C 1.46934 * 111.00661 * 82.08542 * 4 3 2
6 6 C 1.52890 * 108.64118 * 52.06634 * 5 4 3
7 7 C 1.50734 * 109.88903 * 50.39210 * 6 5 4
8 8 C 1.38730 * 118.43097 * 163.19792 * 7 6 5
9 9 C 1.37931 * 120.43217 * 179.80545 * 8 7 6
10 10 C 1.38763 * 119.76861 * 359.97438 * 9 8 7
11 11 O 1.35905 * 120.12247 * 180.11322 * 10 9 8
12 12 C 1.38505 * 119.75080 * 0.09603 * 10 9 8
13 13 C 1.37876 * 121.64101 * 343.15772 * 7 6 5
14 14 C 1.46626 * 110.99980 * 205.00592 * 4 3 2
15 15 N 1.31212 * 107.05503 * 180.24383 * 3 2 1
16 16 N 1.28529 * 109.86342 * 359.55806 * 15 3 2
17 17 C 1.30293 * 110.04990 * 0.45533 * 16 15 3
18 18 C 1.50703 * 126.34602 * 179.69202 * 17 16 15
19 19 C 1.52999 * 109.47257 * 113.48845 * 18 17 16
20 20 C 1.52998 * 109.47052 * 233.48559 * 18 17 16
21 21 C 1.50697 * 109.46915 * 353.48493 * 18 17 16
22 22 H 1.07997 * 120.00228 * 0.02562 * 21 18 17
23 23 C 1.37884 * 119.99797 * 179.97438 * 21 18 17
24 24 N 1.31510 * 119.99773 * 0.02562 * 23 21 18
25 25 Si 1.86795 * 119.99871 * 180.02562 * 23 21 18
26 26 H 1.48505 * 109.46901 * 60.00855 * 25 23 21
27 27 H 1.48502 * 109.47390 * 180.02562 * 25 23 21
28 28 H 1.48496 * 109.47432 * 300.00795 * 25 23 21
29 29 H 1.08993 * 109.47219 * 95.33104 * 1 2 3
30 30 H 1.08998 * 109.46713 * 215.33372 * 1 2 3
31 31 H 1.09002 * 109.46598 * 335.32692 * 1 2 3
32 32 H 1.08999 * 109.51165 * 292.35794 * 5 4 3
33 33 H 1.09006 * 109.64090 * 171.84920 * 5 4 3
34 34 H 1.09001 * 109.38353 * 290.29415 * 6 5 4
35 35 H 1.08999 * 109.39305 * 170.49924 * 6 5 4
36 36 H 1.08002 * 119.78629 * 359.80338 * 8 7 6
37 37 H 1.07998 * 120.11487 * 180.02562 * 9 8 7
38 38 H 0.96700 * 113.99827 * 269.97772 * 11 10 9
39 39 H 1.07990 * 119.83520 * 179.97438 * 12 10 9
40 40 H 1.09006 * 109.29915 * 168.88947 * 14 4 3
41 41 H 1.08992 * 109.14109 * 49.40164 * 14 4 3
42 42 H 1.09000 * 109.46880 * 56.45066 * 19 18 17
43 43 H 1.08995 * 109.47280 * 176.45486 * 19 18 17
44 44 H 1.08997 * 109.47016 * 296.45303 * 19 18 17
45 45 H 1.09002 * 109.46953 * 60.00303 * 20 18 17
46 46 H 1.09000 * 109.47427 * 179.97438 * 20 18 17
47 47 H 1.08995 * 109.47569 * 300.00228 * 20 18 17
48 48 H 0.97002 * 119.99813 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2889 1.0878 0.0000
4 7 1.8978 2.4173 -0.0005
5 6 1.5675 2.8697 1.3579
6 6 2.7356 2.5296 2.2838
7 6 4.0266 3.0250 1.6838
8 6 5.1379 3.1356 2.5069
9 6 6.3411 3.5807 2.0002
10 6 6.4404 3.9195 0.6583
11 8 7.6230 4.3567 0.1509
12 6 5.3299 3.8102 -0.1622
13 6 4.1213 3.3645 0.3509
14 6 2.9399 3.2713 -0.5790
15 7 3.5212 0.6372 -0.0053
16 7 3.5162 -0.6481 0.0007
17 6 2.2906 -1.0901 0.0004
18 6 1.8621 -2.5349 -0.0001
19 6 1.1658 -2.8610 1.3227
20 6 0.8943 -2.7795 -1.1596
21 6 3.0727 -3.4177 -0.1615
22 1 4.0542 -2.9767 -0.2540
23 6 2.9274 -4.7886 -0.1901
24 7 1.7323 -5.3256 -0.0769
25 14 4.4281 -5.8829 -0.3894
26 1 5.3671 -5.6451 0.7362
27 1 4.0060 -7.3067 -0.3901
28 1 5.1042 -5.5669 -1.6732
29 1 -0.3633 -0.0955 -1.0231
30 1 -0.3633 -0.8384 0.5943
31 1 -0.3632 0.9339 0.4290
32 1 0.6672 2.3607 1.7022
33 1 1.4040 3.9474 1.3555
34 1 2.7895 1.4490 2.4163
35 1 2.5804 3.0056 3.2520
36 1 5.0604 2.8714 3.5513
37 1 7.2030 3.6644 2.6455
38 1 7.7404 5.3154 0.1973
39 1 5.4056 4.0739 -1.2067
40 1 2.5351 4.2691 -0.7483
41 1 3.2624 2.8472 -1.5298
42 1 0.3273 -2.1802 1.4693
43 1 0.8004 -3.8875 1.2976
44 1 1.8738 -2.7473 2.1436
45 1 1.3904 -2.5472 -2.1020
46 1 0.5848 -3.8246 -1.1603
47 1 0.0188 -2.1409 -1.0430
48 1 1.6300 -6.2900 -0.0974
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001646680537.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:03
Heat of formation + Delta-G solvation = 61.959837 kcal
Electronic energy + Delta-G solvation = -31175.811517 eV
Core-core repulsion = 27231.993136 eV
Total energy + Delta-G solvation = -3943.818381 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-43.88762 -41.37578 -39.38887 -37.60028 -37.00174 -35.56880 -33.62552 -33.25052
-31.91833 -30.00798 -29.51799 -28.44746 -27.69773 -27.14875 -26.00914 -24.54487
-23.39327 -23.27929 -22.61178 -20.93979 -20.67007 -19.12320 -18.11340 -17.72280
-17.37344 -17.21785 -16.88123 -16.63435 -16.39190 -15.92973 -15.68625 -15.33401
-15.10027 -14.70014 -14.68501 -14.50420 -14.38775 -13.92044 -13.68558 -13.49765
-13.41941 -13.21006 -13.01003 -12.96151 -12.79300 -12.66728 -12.49007 -12.46363
-12.29954 -12.02383 -11.91089 -11.80505 -11.78568 -11.56674 -11.31166 -10.87929
-10.71465 -10.43059 -10.26095 -9.71225 -9.31545 -9.26824 -8.05395 -6.15087
0.31019 0.39318 1.01139 1.42278 1.43221 1.45216 1.54377 2.10545
2.47095 2.65617 2.80712 3.20769 3.25367 3.66837 3.70091 3.82967
3.91973 3.94963 3.97738 4.08683 4.29217 4.32995 4.36589 4.44148
4.48998 4.52087 4.57312 4.65729 4.77344 4.78149 4.80323 4.88019
4.90164 4.97239 4.98489 5.02343 5.09132 5.22222 5.29955 5.36237
5.45973 5.52328 5.59077 5.61603 5.68087 5.84490 5.94383 5.99025
6.09522 6.35431 6.45537 6.87569 6.89075 7.50298 8.08617 8.95872
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013303 B = 0.003682 C = 0.003157
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2104.293333 B = 7603.660263 C = 8867.416118
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.071 3.929
2 N -0.475 5.475
3 C 0.329 3.671
4 N -0.438 5.438
5 C 0.056 3.944
6 C -0.109 4.109
7 C -0.084 4.084
8 C -0.111 4.111
9 C -0.157 4.157
10 C 0.093 3.907
11 O -0.511 6.511
12 C -0.146 4.146
13 C -0.076 4.076
14 C 0.109 3.891
15 N -0.342 5.342
16 N -0.338 5.338
17 C 0.222 3.778
18 C 0.143 3.857
19 C -0.116 4.116
20 C -0.122 4.122
21 C -0.514 4.514
22 H 0.045 0.955
23 C 0.033 3.967
24 N -0.900 5.900
25 Si 0.943 3.057
26 H -0.283 1.283
27 H -0.275 1.275
28 H -0.282 1.282
29 H 0.087 0.913
30 H 0.092 0.908
31 H 0.116 0.884
32 H 0.097 0.903
33 H 0.130 0.870
34 H 0.037 0.963
35 H 0.108 0.892
36 H 0.133 0.867
37 H 0.137 0.863
38 H 0.408 0.592
39 H 0.135 0.865
40 H 0.141 0.859
41 H 0.075 0.925
42 H 0.044 0.956
43 H 0.078 0.922
44 H 0.013 0.987
45 H 0.012 0.988
46 H 0.078 0.922
47 H 0.049 0.951
48 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.923 22.698 3.968 23.562
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.168 5.168
3 C -0.029 4.029
4 N -0.161 5.161
5 C -0.071 4.071
6 C -0.147 4.147
7 C -0.084 4.084
8 C -0.129 4.129
9 C -0.175 4.175
10 C 0.049 3.951
11 O -0.324 6.324
12 C -0.165 4.165
13 C -0.078 4.078
14 C -0.018 4.018
15 N -0.185 5.185
16 N -0.176 5.176
17 C -0.047 4.047
18 C 0.141 3.859
19 C -0.174 4.174
20 C -0.181 4.181
21 C -0.553 4.553
22 H 0.064 0.936
23 C -0.167 4.167
24 N -0.540 5.540
25 Si 0.770 3.230
26 H -0.209 1.209
27 H -0.199 1.199
28 H -0.208 1.208
29 H 0.105 0.895
30 H 0.111 0.889
31 H 0.134 0.866
32 H 0.116 0.884
33 H 0.148 0.852
34 H 0.056 0.944
35 H 0.127 0.873
36 H 0.151 0.849
37 H 0.155 0.845
38 H 0.267 0.733
39 H 0.153 0.847
40 H 0.158 0.842
41 H 0.093 0.907
42 H 0.062 0.938
43 H 0.097 0.903
44 H 0.032 0.968
45 H 0.031 0.969
46 H 0.097 0.903
47 H 0.068 0.932
48 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -3.877 21.984 3.548 22.603
hybrid contribution 0.668 -0.739 0.317 1.046
sum -3.209 21.245 3.866 21.831
Atomic orbital electron populations
1.22439 0.73776 1.05939 1.04872 1.46247 1.09659 1.04917 1.55989
1.22633 0.86385 0.88688 1.05144 1.59509 1.39238 0.94655 1.22649
1.22560 0.97136 1.03867 0.83500 1.21051 0.92818 0.99611 1.01204
1.19544 0.96181 0.99264 0.93417 1.21113 0.92197 0.99193 1.00392
1.21479 0.98468 1.02563 0.95018 1.18454 0.85197 1.00049 0.91389
1.84807 1.34306 1.29745 1.83492 1.21353 0.91760 1.02880 1.00546
1.20004 0.96066 0.97785 0.93954 1.21149 0.86794 0.98354 0.95510
1.74594 1.18047 1.03669 1.22186 1.74007 1.19896 1.02778 1.20942
1.25735 0.85982 0.92665 1.00305 1.16789 0.94820 0.79945 0.94395
1.21713 0.97378 1.02866 0.95473 1.21778 0.96868 1.03454 0.95959
1.21136 0.93135 0.91172 1.49842 0.93622 1.25310 0.98022 0.98467
0.94862 1.69833 1.21763 1.11493 1.50865 0.85857 0.80697 0.78274
0.78175 1.20874 1.19936 1.20838 0.89464 0.88913 0.86589 0.88440
0.85220 0.94400 0.87346 0.84928 0.84477 0.73343 0.84731 0.84185
0.90654 0.93776 0.90287 0.96807 0.96875 0.90308 0.93218 0.92715
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.75 9.40 127.77 1.20 2.95 16
2 N -0.47 -16.96 3.21 -538.19 -1.73 -18.69 16
3 C 0.33 11.50 5.23 260.11 1.36 12.86 16
4 N -0.44 -10.76 5.02 -711.30 -3.57 -14.33 16
5 C 0.06 1.01 6.00 86.26 0.52 1.53 16
6 C -0.11 -2.54 5.21 29.82 0.16 -2.38 16
7 C -0.08 -2.23 5.02 -19.82 -0.10 -2.33 16
8 C -0.11 -2.88 9.65 22.31 0.22 -2.66 16
9 C -0.16 -4.00 9.99 22.32 0.22 -3.77 16
10 C 0.09 2.43 6.70 22.46 0.15 2.58 16
11 O -0.51 -11.55 13.51 -92.48 -1.25 -12.80 16
12 C -0.15 -3.81 9.59 22.43 0.22 -3.59 16
13 C -0.08 -2.00 4.60 -19.87 -0.09 -2.09 16
14 C 0.11 2.49 5.32 85.59 0.46 2.94 16
15 N -0.34 -15.12 9.75 -58.01 -0.57 -15.69 16
16 N -0.34 -17.46 11.01 -49.53 -0.55 -18.00 16
17 C 0.22 10.26 6.34 137.64 0.87 11.13 16
18 C 0.14 6.95 0.52 -53.67 -0.03 6.92 16
19 C -0.12 -5.22 8.13 71.98 0.59 -4.63 16
20 C -0.12 -5.47 8.09 71.98 0.58 -4.89 16
21 C -0.51 -29.06 7.91 25.60 0.20 -28.86 16
22 H 0.05 2.81 6.96 -2.91 -0.02 2.79 16
23 C 0.03 1.79 5.15 84.66 0.44 2.22 16
24 N -0.90 -48.02 9.39 21.45 0.20 -47.82 16
25 Si 0.94 45.17 29.54 68.60 2.03 47.19 16
26 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16
27 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16
28 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16
29 H 0.09 1.99 7.64 -2.39 -0.02 1.97 16
30 H 0.09 2.29 5.27 -2.39 -0.01 2.27 16
31 H 0.12 2.01 7.25 -2.39 -0.02 1.99 16
32 H 0.10 1.52 7.28 -2.39 -0.02 1.50 16
33 H 0.13 1.47 8.04 -2.38 -0.02 1.46 16
34 H 0.04 1.22 7.30 -2.39 -0.02 1.20 16
35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16
36 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16
37 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16
38 H 0.41 4.42 9.06 -74.06 -0.67 3.75 16
39 H 0.13 3.08 8.06 -2.92 -0.02 3.06 16
40 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16
41 H 0.08 2.02 8.03 -2.39 -0.02 2.00 16
42 H 0.04 1.62 5.70 -2.39 -0.01 1.61 16
43 H 0.08 3.83 6.17 -2.39 -0.01 3.82 16
44 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16
45 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16
46 H 0.08 3.84 6.07 -2.39 -0.01 3.82 16
47 H 0.05 1.80 5.50 -2.39 -0.01 1.78 16
48 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16
Total: -1.00 -75.22 370.90 1.86 -73.37
By element:
Atomic # 1 Polarization: 18.52 SS G_CDS: 0.33 Total: 18.85 kcal
Atomic # 6 Polarization: -19.02 SS G_CDS: 6.95 Total: -12.07 kcal
Atomic # 7 Polarization: -108.33 SS G_CDS: -6.21 Total: -114.53 kcal
Atomic # 8 Polarization: -11.55 SS G_CDS: -1.25 Total: -12.80 kcal
Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal
Total: -75.22 1.86 -73.37 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001646680537.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.327 kcal
(2) G-P(sol) polarization free energy of solvation -75.222 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.104 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.960 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds