Wall clock time and date at job start Sat Apr 11 2020 06:43:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.52997 * 109.47320 * 2 1
4 4 O 1.45206 * 109.47604 * 120.00132 * 2 1 3
5 5 C 1.34222 * 116.99814 * 89.99622 * 4 2 1
6 6 O 1.20826 * 120.00689 * 0.02562 * 5 4 2
7 7 C 1.50699 * 119.99730 * 180.02562 * 5 4 2
8 8 C 1.52997 * 109.47339 * 180.02562 * 7 5 4
9 9 C 1.53002 * 109.47469 * 179.97438 * 8 7 5
10 10 H 1.09002 * 109.47070 * 305.00072 * 9 8 7
11 11 C 1.53000 * 109.47233 * 184.99697 * 9 8 7
12 12 N 1.46499 * 109.46799 * 65.00172 * 9 8 7
13 13 C 1.34781 * 119.99874 * 205.00309 * 12 9 8
14 14 O 1.21587 * 119.99893 * 359.97438 * 13 12 9
15 15 N 1.34783 * 120.00017 * 180.02562 * 13 12 9
16 16 C 1.47018 * 125.64707 * 359.68604 * 15 13 12
17 17 C 1.54333 * 107.26230 * 178.85227 * 16 15 13
18 18 C 1.55148 * 103.02398 * 338.14168 * 17 16 15
19 19 O 1.42903 * 111.00226 * 277.23596 * 18 17 16
20 20 C 1.50698 * 111.04182 * 153.39497 * 18 17 16
21 21 H 1.08008 * 119.99278 * 6.33440 * 20 18 17
22 22 C 1.37875 * 120.00259 * 186.33205 * 20 18 17
23 23 N 1.31507 * 119.99967 * 359.97438 * 22 20 18
24 24 Si 1.86799 * 119.99813 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.47446 * 359.97438 * 24 22 20
26 26 H 1.48495 * 109.47253 * 119.99850 * 24 22 20
27 27 H 1.48501 * 109.46864 * 240.00231 * 24 22 20
28 28 C 1.47425 * 125.64526 * 179.97438 * 15 13 12
29 29 H 1.09001 * 109.47553 * 60.00357 * 1 2 3
30 30 H 1.09004 * 109.47314 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47370 * 299.99659 * 1 2 3
32 32 H 1.09002 * 109.47370 * 240.00341 * 2 1 3
33 33 H 1.08996 * 109.47929 * 180.02562 * 3 2 1
34 34 H 1.09007 * 109.47145 * 299.99991 * 3 2 1
35 35 H 1.09002 * 109.47360 * 59.99967 * 3 2 1
36 36 H 1.08997 * 109.47531 * 59.99848 * 7 5 4
37 37 H 1.09006 * 109.47449 * 300.00349 * 7 5 4
38 38 H 1.09008 * 109.47149 * 59.99835 * 8 7 5
39 39 H 1.08997 * 109.47163 * 299.99905 * 8 7 5
40 40 H 1.09004 * 109.46724 * 60.00652 * 11 9 8
41 41 H 1.09001 * 109.47194 * 179.97438 * 11 9 8
42 42 H 1.08992 * 109.47399 * 300.00166 * 11 9 8
43 43 H 0.97002 * 120.00410 * 24.99527 * 12 9 8
44 44 H 1.09006 * 109.88242 * 298.39749 * 16 15 13
45 45 H 1.09003 * 109.87877 * 59.56391 * 16 15 13
46 46 H 1.09000 * 110.84693 * 219.66796 * 17 16 15
47 47 H 1.08997 * 110.51457 * 96.45611 * 17 16 15
48 48 H 0.96704 * 113.99756 * 173.65021 * 19 18 17
49 49 H 0.97001 * 120.00198 * 180.02562 * 23 22 20
50 50 H 1.08998 * 110.36740 * 322.92663 * 28 15 13
51 51 H 1.09001 * 110.36564 * 85.14360 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 8 2.0140 -0.6845 1.1856
5 6 2.2171 -2.0075 1.0851
6 8 1.9981 -2.5748 0.0410
7 6 2.7183 -2.7853 2.2745
8 6 2.8636 -4.2603 1.8950
9 6 3.3731 -5.0499 3.1024
10 1 4.2978 -4.6016 3.4658
11 6 3.6369 -6.4993 2.6895
12 7 2.3654 -5.0208 4.1654
13 6 2.7369 -5.1834 5.4507
14 8 3.9083 -5.3547 5.7280
15 7 1.8097 -5.1570 6.4287
16 6 0.3665 -4.9539 6.2358
17 6 -0.2968 -5.0304 7.6272
18 6 0.7382 -5.8271 8.4646
19 8 0.5874 -7.2336 8.2618
20 6 0.6325 -5.4807 9.9274
21 1 -0.1639 -4.8387 10.2740
22 6 1.5522 -5.9834 10.8232
23 7 2.5215 -6.7656 10.4011
24 14 1.4205 -5.5546 12.6365
25 1 0.2507 -4.6655 12.8513
26 1 1.2490 -6.7991 13.4283
27 1 2.6577 -4.8577 13.0714
28 6 2.0758 -5.3212 7.8694
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 3.1299 1.4426 -0.0005
34 1 1.6766 1.9563 -0.8900
35 1 1.6766 1.9563 0.8900
36 1 2.0090 -2.6895 3.0965
37 1 3.6873 -2.3928 2.5833
38 1 3.5733 -4.3558 1.0731
39 1 1.8950 -4.6531 1.5860
40 1 4.3867 -6.5210 1.8986
41 1 4.0003 -7.0618 3.5496
42 1 2.7123 -6.9477 2.3261
43 1 1.4308 -4.8843 3.9442
44 1 0.1861 -3.9756 5.7902
45 1 -0.0352 -5.7366 5.5921
46 1 -1.2452 -5.5652 7.5760
47 1 -0.4382 -4.0309 8.0384
48 1 1.2721 -7.7679 8.6871
49 1 3.1683 -7.1196 11.0313
50 1 2.8641 -6.0570 8.0282
51 1 2.3538 -4.3661 8.3150
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592017865.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:15
Heat of formation + Delta-G solvation = -203.098933 kcal
Electronic energy + Delta-G solvation = -30833.451435 eV
Core-core repulsion = 26538.537572 eV
Total energy + Delta-G solvation = -4294.913862 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.203 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.67160 -41.22731 -39.30567 -38.14750 -37.13758 -35.99383 -34.23146 -34.21114
-33.36756 -31.84291 -30.76343 -29.43675 -28.20904 -26.96564 -26.33389 -24.33601
-23.01229 -21.97195 -21.44854 -21.33973 -20.99137 -19.25948 -18.90186 -18.63106
-17.57074 -17.41037 -17.13120 -16.88618 -16.69163 -16.23313 -15.77494 -15.30213
-15.26182 -15.05303 -14.84651 -14.67854 -14.58136 -14.31719 -13.88620 -13.74123
-13.61016 -13.47377 -13.24098 -13.17902 -13.15621 -12.95675 -12.84950 -12.71284
-12.51550 -12.48456 -12.31203 -12.22928 -12.18228 -12.05574 -11.90151 -11.82577
-11.61207 -11.40403 -11.24544 -11.14198 -10.65250 -10.29244 -10.14759 -9.28125
-8.22499 -6.39514 1.17147 1.41720 1.45260 1.55893 1.67987 1.74105
2.23701 2.39772 3.03641 3.13925 3.55955 3.73163 3.81408 3.83074
3.93870 4.01811 4.06285 4.13125 4.16051 4.22764 4.37971 4.40641
4.50097 4.58712 4.65792 4.66827 4.76257 4.79778 4.80801 4.83273
4.84561 4.90008 5.00525 5.10374 5.12169 5.14416 5.16479 5.21497
5.31772 5.35355 5.42609 5.49757 5.53561 5.65218 5.78649 6.08582
6.24741 6.68276 6.73372 7.13674 7.30086 7.37283 7.65690 8.82695
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.015109 B = 0.002293 C = 0.002131
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1852.768847 B =12207.956866 C =13134.179289
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.070 3.930
3 C -0.146 4.146
4 O -0.362 6.362
5 C 0.466 3.534
6 O -0.534 6.534
7 C -0.113 4.113
8 C -0.099 4.099
9 C 0.162 3.838
10 H 0.075 0.925
11 C -0.160 4.160
12 N -0.726 5.726
13 C 0.712 3.288
14 O -0.642 6.642
15 N -0.634 5.634
16 C 0.107 3.893
17 C -0.111 4.111
18 C 0.231 3.769
19 O -0.588 6.588
20 C -0.553 4.553
21 H 0.069 0.931
22 C 0.025 3.975
23 N -0.915 5.915
24 Si 0.963 3.037
25 H -0.263 1.263
26 H -0.281 1.281
27 H -0.283 1.283
28 C 0.130 3.870
29 H 0.094 0.906
30 H 0.046 0.954
31 H 0.070 0.930
32 H 0.075 0.925
33 H 0.062 0.938
34 H 0.098 0.902
35 H 0.070 0.930
36 H 0.113 0.887
37 H 0.117 0.883
38 H 0.098 0.902
39 H 0.084 0.916
40 H 0.085 0.915
41 H 0.030 0.970
42 H 0.067 0.933
43 H 0.406 0.594
44 H 0.092 0.908
45 H 0.071 0.929
46 H 0.083 0.917
47 H 0.089 0.911
48 H 0.372 0.628
49 H 0.268 0.732
50 H 0.042 0.958
51 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.528 12.974 -21.411 25.282
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.015 3.985
3 C -0.203 4.203
4 O -0.279 6.279
5 C 0.311 3.689
6 O -0.424 6.424
7 C -0.151 4.151
8 C -0.137 4.137
9 C 0.057 3.943
10 H 0.093 0.907
11 C -0.218 4.218
12 N -0.383 5.383
13 C 0.414 3.586
14 O -0.524 6.524
15 N -0.371 5.371
16 C -0.015 4.015
17 C -0.149 4.149
18 C 0.190 3.810
19 O -0.395 6.395
20 C -0.592 4.592
21 H 0.087 0.913
22 C -0.176 4.176
23 N -0.555 5.555
24 Si 0.789 3.211
25 H -0.187 1.187
26 H -0.207 1.207
27 H -0.209 1.209
28 C 0.006 3.994
29 H 0.112 0.888
30 H 0.065 0.935
31 H 0.089 0.911
32 H 0.093 0.907
33 H 0.081 0.919
34 H 0.117 0.883
35 H 0.089 0.911
36 H 0.131 0.869
37 H 0.135 0.865
38 H 0.116 0.884
39 H 0.103 0.897
40 H 0.104 0.896
41 H 0.049 0.951
42 H 0.086 0.914
43 H 0.243 0.757
44 H 0.110 0.890
45 H 0.089 0.911
46 H 0.102 0.898
47 H 0.107 0.893
48 H 0.220 0.780
49 H 0.077 0.923
50 H 0.060 0.940
51 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -3.092 12.838 -21.916 25.587
hybrid contribution 0.451 -0.377 1.459 1.573
sum -2.642 12.462 -20.457 24.099
Atomic orbital electron populations
1.22206 0.93458 1.02466 1.04323 1.22994 0.95430 0.93981 0.86045
1.21914 1.02023 0.92085 1.04314 1.86596 1.76816 1.22318 1.42145
1.24059 0.73357 0.81294 0.90166 1.90642 1.49374 1.70442 1.31955
1.21480 1.04984 0.94348 0.94249 1.21621 1.04124 0.91410 0.96568
1.20853 0.91393 0.96356 0.85676 0.90691 1.22145 1.02797 0.95714
1.01160 1.45118 1.11680 1.78276 1.03220 1.15727 0.83696 0.77957
0.81188 1.90850 1.18455 1.59975 1.83165 1.47873 1.07773 1.74719
1.06729 1.22103 0.79260 1.01666 0.98435 1.22591 0.98437 1.00455
0.93408 1.19880 0.89614 0.79033 0.92429 1.86094 1.55525 1.19702
1.78208 1.21824 1.13116 1.31320 0.92895 0.91317 1.25833 0.94178
0.94099 1.03505 1.69854 1.15689 1.33434 1.36477 0.85426 0.78110
0.78040 0.79556 1.18691 1.20725 1.20909 1.22599 1.00879 0.98639
0.77265 0.88771 0.93459 0.91051 0.90701 0.91861 0.88342 0.91123
0.86907 0.86493 0.88401 0.89749 0.89586 0.95052 0.91443 0.75737
0.89030 0.91069 0.89812 0.89294 0.77959 0.92264 0.93964 0.94332
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.10 9.55 71.98 0.69 -1.41 16
2 C 0.07 1.03 3.18 30.59 0.10 1.13 16
3 C -0.15 -1.44 9.57 71.98 0.69 -0.75 16
4 O -0.36 -6.74 9.88 -51.34 -0.51 -7.24 16
5 C 0.47 8.99 7.93 71.24 0.56 9.56 16
6 O -0.53 -12.63 15.20 21.96 0.33 -12.30 16
7 C -0.11 -1.80 5.70 29.85 0.17 -1.63 16
8 C -0.10 -1.60 4.04 30.59 0.12 -1.48 16
9 C 0.16 3.62 2.57 44.99 0.12 3.74 16
10 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16
11 C -0.16 -3.59 9.48 71.98 0.68 -2.91 16
12 N -0.73 -19.21 4.49 -457.80 -2.06 -21.26 16
13 C 0.71 27.66 8.45 179.05 1.51 29.17 16
14 O -0.64 -30.95 16.26 -3.99 -0.06 -31.02 16
15 N -0.63 -25.28 3.33 -829.76 -2.76 -28.04 16
16 C 0.11 3.33 6.15 86.73 0.53 3.87 16
17 C -0.11 -4.08 6.13 31.78 0.19 -3.88 16
18 C 0.23 11.05 0.87 -10.16 -0.01 11.04 16
19 O -0.59 -30.13 13.16 -148.98 -1.96 -32.10 16
20 C -0.55 -28.60 8.27 25.60 0.21 -28.39 16
21 H 0.07 3.44 7.79 -2.91 -0.02 3.41 16
22 C 0.02 1.29 5.29 84.66 0.45 1.74 16
23 N -0.92 -50.28 10.69 21.45 0.23 -50.05 16
24 Si 0.96 41.82 29.54 68.60 2.03 43.84 16
25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16
26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16
27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16
28 C 0.13 6.37 5.38 86.85 0.47 6.84 16
29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
30 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16
31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
32 H 0.07 1.24 7.16 -2.39 -0.02 1.22 16
33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16
34 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16
35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
36 H 0.11 1.71 7.75 -2.39 -0.02 1.69 16
37 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16
38 H 0.10 1.46 8.10 -2.38 -0.02 1.44 16
39 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16
40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
41 H 0.03 0.92 8.14 -2.39 -0.02 0.91 16
42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
43 H 0.41 8.44 7.59 -92.71 -0.70 7.74 16
44 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16
45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16
46 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16
47 H 0.09 3.03 8.03 -2.39 -0.02 3.01 16
48 H 0.37 20.16 7.56 -74.05 -0.56 19.60 16
49 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16
50 H 0.04 2.41 7.33 -2.39 -0.02 2.39 16
51 H 0.04 1.98 8.03 -2.39 -0.02 1.96 16
Total: -1.00 -70.54 415.62 1.40 -69.14
By element:
Atomic # 1 Polarization: 42.72 SS G_CDS: -0.34 Total: 42.39 kcal
Atomic # 6 Polarization: 20.14 SS G_CDS: 6.49 Total: 26.63 kcal
Atomic # 7 Polarization: -94.77 SS G_CDS: -4.59 Total: -99.35 kcal
Atomic # 8 Polarization: -80.45 SS G_CDS: -2.20 Total: -82.65 kcal
Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal
Total: -70.54 1.40 -69.14 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592017865.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -133.959 kcal
(2) G-P(sol) polarization free energy of solvation -70.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.494 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.140 kcal
(6) G-S(sol) free energy of system = (1) + (5) -203.099 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds