Wall clock time and date at job start Sat Apr 11 2020 06:44:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09006 * 109.47077 * 2 1
4 4 N 1.46898 * 109.47258 * 240.00215 * 2 1 3
5 5 C 1.46895 * 111.00406 * 84.99684 * 4 2 1
6 6 C 1.50706 * 109.47095 * 180.02562 * 5 4 2
7 7 C 1.38621 * 120.39993 * 95.00381 * 6 5 4
8 8 C 1.38581 * 118.55860 * 179.97438 * 7 6 5
9 9 N 1.32294 * 119.19616 * 359.97438 * 8 7 6
10 10 C 1.32476 * 120.74181 * 0.02562 * 9 8 7
11 11 N 1.38406 * 119.21640 * 180.02562 * 10 9 8
12 12 C 1.46503 * 120.00142 * 0.02562 * 11 10 9
13 13 C 1.46501 * 120.00029 * 180.02562 * 11 10 9
14 14 N 1.32255 * 120.39691 * 274.71851 * 6 5 4
15 15 C 1.50694 * 109.47045 * 119.99643 * 2 1 3
16 16 C 1.38304 * 119.93239 * 79.73348 * 15 2 1
17 17 C 1.38093 * 120.06923 * 179.72394 * 16 15 2
18 18 C 1.38877 * 119.93121 * 0.54435 * 17 16 15
19 19 O 1.35755 * 120.06915 * 179.75095 * 18 17 16
20 20 C 1.34831 * 116.99803 * 174.44211 * 19 18 17
21 21 H 1.07992 * 120.00570 * 5.05267 * 20 19 18
22 22 C 1.38657 * 119.99510 * 185.05398 * 20 19 18
23 23 N 1.31560 * 120.00410 * 359.97438 * 22 20 19
24 24 Si 1.86806 * 119.99686 * 180.02562 * 22 20 19
25 25 H 1.48497 * 109.47032 * 359.97438 * 24 22 20
26 26 H 1.48502 * 109.46953 * 119.99915 * 24 22 20
27 27 H 1.48502 * 109.46787 * 240.00057 * 24 22 20
28 28 C 1.38878 * 119.86390 * 359.72793 * 18 17 16
29 29 C 1.38094 * 119.92761 * 359.97438 * 28 18 17
30 30 H 1.08999 * 109.47111 * 60.00410 * 1 2 3
31 31 H 1.08997 * 109.46892 * 180.02562 * 1 2 3
32 32 H 1.08994 * 109.46966 * 300.00263 * 1 2 3
33 33 H 1.00904 * 110.99968 * 208.95352 * 4 2 1
34 34 H 1.09002 * 109.46888 * 59.99933 * 5 4 2
35 35 H 1.09000 * 109.46930 * 300.00183 * 5 4 2
36 36 H 1.08000 * 120.72129 * 359.97438 * 7 6 5
37 37 H 1.08005 * 120.40541 * 179.97438 * 8 7 6
38 38 H 1.08997 * 109.47015 * 0.02562 * 12 11 10
39 39 H 1.08996 * 109.46772 * 119.99559 * 12 11 10
40 40 H 1.08996 * 109.47055 * 239.99407 * 12 11 10
41 41 H 1.09004 * 109.47215 * 90.00137 * 13 11 10
42 42 H 1.08995 * 109.47255 * 210.00450 * 13 11 10
43 43 H 1.09003 * 109.47343 * 330.00815 * 13 11 10
44 44 H 1.08005 * 119.96089 * 359.97438 * 16 15 2
45 45 H 1.08001 * 120.03313 * 180.26958 * 17 16 15
46 46 H 0.96998 * 119.99969 * 180.02562 * 23 22 20
47 47 H 1.07996 * 120.03678 * 179.97438 * 28 18 17
48 48 H 1.08004 * 119.96491 * 180.02562 * 29 28 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0197 -0.6924 -1.1994
5 6 2.0825 0.2226 -2.3469
6 6 2.5874 -0.5219 -3.5560
7 6 1.6959 -1.0686 -4.4660
8 6 2.2019 -1.7450 -5.5646
9 7 3.5127 -1.8476 -5.7117
10 6 4.3377 -1.3135 -4.8235
11 7 5.7035 -1.4394 -5.0088
12 6 6.2213 -2.1562 -6.1768
13 6 6.6315 -0.8558 -4.0369
14 7 3.8864 -0.6566 -3.7647
15 6 2.0323 -0.7103 1.2305
16 6 2.0609 -2.0926 1.2660
17 6 2.5260 -2.7464 2.3900
18 6 2.9547 -2.0145 3.4896
19 8 3.4076 -2.6544 4.5979
20 6 3.9154 -1.8868 5.5833
21 1 3.8738 -0.8105 5.5053
22 6 4.4910 -2.4795 6.6969
23 7 4.5412 -3.7907 6.7922
24 14 5.1938 -1.4161 8.0625
25 1 5.0136 0.0167 7.7166
26 1 4.4859 -1.7117 9.3340
27 1 6.6410 -1.7081 8.2220
28 6 2.9194 -0.6267 3.4531
29 6 2.4590 0.0213 2.3238
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3633 0.5138 0.8899
33 1 2.9174 -1.1204 -1.0287
34 1 2.7588 1.0462 -2.1182
35 1 1.0870 0.6162 -2.5525
36 1 0.6302 -0.9697 -4.3218
37 1 1.5344 -2.1829 -6.2920
38 1 5.3884 -2.5160 -6.7809
39 1 6.8374 -1.4828 -6.7726
40 1 6.8232 -3.0026 -5.8462
41 1 6.8533 -1.5886 -3.2610
42 1 7.5543 -0.5704 -4.5417
43 1 6.1771 0.0258 -3.5846
44 1 1.7229 -2.6612 0.4122
45 1 2.5522 -3.8258 2.4154
46 1 4.9435 -4.2052 7.5714
47 1 3.2517 -0.0548 4.3068
48 1 2.4317 1.1006 2.2946
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000776170716.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:22
Heat of formation + Delta-G solvation = 67.473976 kcal
Electronic energy + Delta-G solvation = -28430.040111 eV
Core-core repulsion = 24486.460842 eV
Total energy + Delta-G solvation = -3943.579270 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.14222 -39.22167 -37.69808 -36.94709 -35.65944 -33.91309 -32.33593 -31.82319
-30.41997 -30.08613 -28.46304 -27.94270 -26.23106 -25.94162 -25.37202 -23.08446
-22.31850 -21.95743 -21.33334 -19.95084 -17.94795 -17.90279 -17.49239 -16.98257
-15.94385 -15.85395 -15.63623 -15.25056 -14.87820 -14.60181 -14.51856 -14.34574
-14.05979 -13.87584 -13.69815 -13.52928 -13.11566 -12.77113 -12.75728 -12.72672
-12.51594 -12.37500 -12.29447 -12.20062 -11.79208 -11.67509 -11.36818 -11.21284
-11.07311 -10.83690 -10.72274 -10.63244 -10.42964 -10.41464 -10.23869 -9.33562
-9.22733 -8.83651 -8.44883 -8.16783 -8.07642 -7.18093 -6.45705 -4.04510
0.98613 1.09049 2.23021 2.29943 2.46833 3.11411 3.12979 3.18503
3.67044 3.91176 3.95967 4.23544 4.42747 4.49387 4.56737 4.94753
5.01051 5.05428 5.07162 5.08862 5.12789 5.16610 5.28934 5.33315
5.40900 5.44067 5.46942 5.56070 5.63069 5.64671 5.68715 5.72436
5.87559 5.95028 5.99812 6.14454 6.23510 6.38519 6.45575 6.58971
6.73082 6.74602 6.84213 6.99312 7.03740 7.23214 7.26559 7.37378
7.43268 7.49897 7.83316 7.99538 8.13749 9.00070 9.70638 10.72411
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013308 B = 0.002161 C = 0.001973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2103.443452 B =12952.631285 C =14189.433072
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.144 3.856
3 H 0.044 0.956
4 N -0.675 5.675
5 C 0.107 3.893
6 C 0.228 3.772
7 C -0.272 4.272
8 C 0.189 3.811
9 N -0.575 5.575
10 C 0.563 3.437
11 N -0.594 5.594
12 C 0.097 3.903
13 C 0.102 3.898
14 N -0.564 5.564
15 C -0.193 4.193
16 C -0.054 4.054
17 C -0.195 4.195
18 C 0.156 3.844
19 O -0.178 6.178
20 C -0.391 4.391
21 H 0.092 0.908
22 C 0.038 3.962
23 N -0.862 5.862
24 Si 0.941 3.059
25 H -0.267 1.267
26 H -0.276 1.276
27 H -0.276 1.276
28 C -0.235 4.235
29 C -0.064 4.064
30 H 0.046 0.954
31 H 0.062 0.938
32 H 0.056 0.944
33 H 0.351 0.649
34 H 0.051 0.949
35 H 0.092 0.908
36 H 0.144 0.856
37 H 0.166 0.834
38 H 0.092 0.908
39 H 0.055 0.945
40 H 0.056 0.944
41 H 0.053 0.947
42 H 0.067 0.933
43 H 0.080 0.920
44 H 0.118 0.882
45 H 0.116 0.884
46 H 0.269 0.731
47 H 0.126 0.874
48 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.509 7.815 -23.872 25.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.035 3.965
3 H 0.062 0.938
4 N -0.309 5.309
5 C -0.023 4.023
6 C 0.079 3.921
7 C -0.298 4.298
8 C 0.022 3.978
9 N -0.298 5.298
10 C 0.208 3.792
11 N -0.312 5.312
12 C -0.046 4.046
13 C -0.041 4.041
14 N -0.287 5.287
15 C -0.194 4.194
16 C -0.073 4.073
17 C -0.214 4.214
18 C 0.102 3.898
19 O -0.081 6.081
20 C -0.467 4.467
21 H 0.110 0.890
22 C -0.166 4.166
23 N -0.497 5.497
24 Si 0.766 3.234
25 H -0.191 1.191
26 H -0.201 1.201
27 H -0.201 1.201
28 C -0.254 4.254
29 C -0.083 4.083
30 H 0.065 0.935
31 H 0.081 0.919
32 H 0.075 0.925
33 H 0.171 0.829
34 H 0.069 0.931
35 H 0.110 0.890
36 H 0.162 0.838
37 H 0.183 0.817
38 H 0.111 0.889
39 H 0.073 0.927
40 H 0.075 0.925
41 H 0.072 0.928
42 H 0.086 0.914
43 H 0.099 0.901
44 H 0.136 0.864
45 H 0.134 0.866
46 H 0.079 0.921
47 H 0.144 0.856
48 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -1.811 7.057 -23.962 25.045
hybrid contribution 0.301 1.099 1.097 1.582
sum -1.510 8.156 -22.864 24.322
Atomic orbital electron populations
1.21783 0.94374 1.02400 1.00487 1.20162 0.95185 0.94577 0.86556
0.93833 1.60649 1.34291 1.32043 1.03881 1.20889 1.00578 0.93268
0.87573 1.21284 0.87349 0.89858 0.93632 1.22344 1.02288 1.06551
0.98621 1.22890 0.90161 0.90288 0.94494 1.67809 1.04828 1.25937
1.31189 1.19182 0.86746 0.87472 0.85811 1.45843 1.00288 1.58536
1.26505 1.21686 1.00274 0.95678 0.86990 1.21619 0.91809 0.99170
0.91509 1.67677 1.16916 1.22120 1.21976 1.19222 1.10395 0.93766
0.96030 1.20483 0.96949 0.93389 0.96478 1.20247 1.08795 0.99423
0.92962 1.19424 0.91902 0.90932 0.87545 1.83984 1.67217 1.35104
1.21834 1.21370 1.37866 0.90716 0.96794 0.89037 1.25297 0.96764
0.96320 0.98187 1.70050 1.41661 1.08727 1.29297 0.85651 0.78703
0.79252 0.79840 1.19119 1.20132 1.20143 1.21113 1.09828 0.94413
1.00033 1.20575 0.96843 0.98114 0.92733 0.93456 0.91904 0.92537
0.82942 0.93127 0.89017 0.83845 0.81696 0.88928 0.92660 0.92532
0.92793 0.91443 0.90140 0.86405 0.86626 0.92069 0.85616 0.87738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.55 9.39 37.16 0.35 -1.20 16
2 C 0.14 1.87 2.81 -68.87 -0.19 1.68 16
3 H 0.04 0.55 7.66 -51.93 -0.40 0.15 16
4 N -0.68 -8.32 5.69 -109.22 -0.62 -8.94 16
5 C 0.11 1.11 5.84 -4.98 -0.03 1.08 16
6 C 0.23 2.59 6.33 -82.27 -0.52 2.07 16
7 C -0.27 -2.61 9.83 -39.31 -0.39 -2.99 16
8 C 0.19 1.78 11.30 -17.23 -0.19 1.59 16
9 N -0.57 -6.74 8.85 -13.93 -0.12 -6.86 16
10 C 0.56 7.12 8.18 -322.80 -2.64 4.48 16
11 N -0.59 -6.37 3.37 -191.89 -0.65 -7.02 16
12 C 0.10 0.77 10.71 59.85 0.64 1.41 16
13 C 0.10 0.93 10.49 59.85 0.63 1.55 16
14 N -0.56 -7.28 9.05 -10.15 -0.09 -7.37 16
15 C -0.19 -3.19 4.71 -104.58 -0.49 -3.69 16
16 C -0.05 -0.97 9.00 -39.61 -0.36 -1.33 16
17 C -0.19 -4.15 9.99 -39.40 -0.39 -4.54 16
18 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16
19 O -0.18 -5.10 9.76 0.03 0.00 -5.10 16
20 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16
21 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16
22 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16
23 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16
24 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16
25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16
26 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16
27 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16
28 C -0.23 -5.07 9.17 -39.40 -0.36 -5.43 16
29 C -0.06 -1.15 9.66 -39.61 -0.38 -1.53 16
30 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16
31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
33 H 0.35 4.94 7.99 -39.29 -0.31 4.63 16
34 H 0.05 0.54 8.06 -51.93 -0.42 0.13 16
35 H 0.09 0.79 7.36 -51.93 -0.38 0.41 16
36 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16
37 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16
38 H 0.09 0.80 6.76 -51.93 -0.35 0.45 16
39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
42 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16
43 H 0.08 0.81 7.33 -51.93 -0.38 0.43 16
44 H 0.12 1.90 7.72 -52.48 -0.41 1.49 16
45 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16
46 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16
47 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16
48 H 0.10 1.61 8.03 -52.48 -0.42 1.18 16
LS Contribution 400.75 15.07 6.04 6.04
Total: -1.00 -32.34 400.75 -11.07 -43.41
By element:
Atomic # 1 Polarization: 14.95 SS G_CDS: -6.96 Total: 7.99 kcal
Atomic # 6 Polarization: -8.64 SS G_CDS: -4.40 Total: -13.03 kcal
Atomic # 7 Polarization: -54.09 SS G_CDS: -0.72 Total: -54.82 kcal
Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal
Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -32.34 -11.07 -43.41 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776170716.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.883 kcal
(2) G-P(sol) polarization free energy of solvation -32.341 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.542 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.474 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds