Wall clock time and date at job start Sat Apr 11 2020 06:44:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09006 * 109.47077 * 2 1
4 4 N 1.46898 * 109.47258 * 240.00215 * 2 1 3
5 5 C 1.46895 * 111.00406 * 84.99684 * 4 2 1
6 6 C 1.50706 * 109.47095 * 180.02562 * 5 4 2
7 7 C 1.38621 * 120.39993 * 95.00381 * 6 5 4
8 8 C 1.38581 * 118.55860 * 179.97438 * 7 6 5
9 9 N 1.32294 * 119.19616 * 359.97438 * 8 7 6
10 10 C 1.32476 * 120.74181 * 0.02562 * 9 8 7
11 11 N 1.38406 * 119.21640 * 180.02562 * 10 9 8
12 12 C 1.46503 * 120.00142 * 0.02562 * 11 10 9
13 13 C 1.46501 * 120.00029 * 180.02562 * 11 10 9
14 14 N 1.32255 * 120.39691 * 274.71851 * 6 5 4
15 15 C 1.50694 * 109.47045 * 119.99643 * 2 1 3
16 16 C 1.38304 * 119.93239 * 79.73348 * 15 2 1
17 17 C 1.38093 * 120.06923 * 179.72394 * 16 15 2
18 18 C 1.38877 * 119.93121 * 0.54435 * 17 16 15
19 19 O 1.35755 * 120.06915 * 179.75095 * 18 17 16
20 20 C 1.34831 * 116.99803 * 174.44211 * 19 18 17
21 21 H 1.07992 * 120.00570 * 5.05267 * 20 19 18
22 22 C 1.38657 * 119.99510 * 185.05398 * 20 19 18
23 23 N 1.31560 * 120.00410 * 359.97438 * 22 20 19
24 24 Si 1.86806 * 119.99686 * 180.02562 * 22 20 19
25 25 H 1.48497 * 109.47032 * 359.97438 * 24 22 20
26 26 H 1.48502 * 109.46953 * 119.99915 * 24 22 20
27 27 H 1.48502 * 109.46787 * 240.00057 * 24 22 20
28 28 C 1.38878 * 119.86390 * 359.72793 * 18 17 16
29 29 C 1.38094 * 119.92761 * 359.97438 * 28 18 17
30 30 H 1.08999 * 109.47111 * 60.00410 * 1 2 3
31 31 H 1.08997 * 109.46892 * 180.02562 * 1 2 3
32 32 H 1.08994 * 109.46966 * 300.00263 * 1 2 3
33 33 H 1.00904 * 110.99968 * 208.95352 * 4 2 1
34 34 H 1.09002 * 109.46888 * 59.99933 * 5 4 2
35 35 H 1.09000 * 109.46930 * 300.00183 * 5 4 2
36 36 H 1.08000 * 120.72129 * 359.97438 * 7 6 5
37 37 H 1.08005 * 120.40541 * 179.97438 * 8 7 6
38 38 H 1.08997 * 109.47015 * 0.02562 * 12 11 10
39 39 H 1.08996 * 109.46772 * 119.99559 * 12 11 10
40 40 H 1.08996 * 109.47055 * 239.99407 * 12 11 10
41 41 H 1.09004 * 109.47215 * 90.00137 * 13 11 10
42 42 H 1.08995 * 109.47255 * 210.00450 * 13 11 10
43 43 H 1.09003 * 109.47343 * 330.00815 * 13 11 10
44 44 H 1.08005 * 119.96089 * 359.97438 * 16 15 2
45 45 H 1.08001 * 120.03313 * 180.26958 * 17 16 15
46 46 H 0.96998 * 119.99969 * 180.02562 * 23 22 20
47 47 H 1.07996 * 120.03678 * 179.97438 * 28 18 17
48 48 H 1.08004 * 119.96491 * 180.02562 * 29 28 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0197 -0.6924 -1.1994
5 6 2.0825 0.2226 -2.3469
6 6 2.5874 -0.5219 -3.5560
7 6 1.6959 -1.0686 -4.4660
8 6 2.2019 -1.7450 -5.5646
9 7 3.5127 -1.8476 -5.7117
10 6 4.3377 -1.3135 -4.8235
11 7 5.7035 -1.4394 -5.0088
12 6 6.2213 -2.1562 -6.1768
13 6 6.6315 -0.8558 -4.0369
14 7 3.8864 -0.6566 -3.7647
15 6 2.0323 -0.7103 1.2305
16 6 2.0609 -2.0926 1.2660
17 6 2.5260 -2.7464 2.3900
18 6 2.9547 -2.0145 3.4896
19 8 3.4076 -2.6544 4.5979
20 6 3.9154 -1.8868 5.5833
21 1 3.8738 -0.8105 5.5053
22 6 4.4910 -2.4795 6.6969
23 7 4.5412 -3.7907 6.7922
24 14 5.1938 -1.4161 8.0625
25 1 5.0136 0.0167 7.7166
26 1 4.4859 -1.7117 9.3340
27 1 6.6410 -1.7081 8.2220
28 6 2.9194 -0.6267 3.4531
29 6 2.4590 0.0213 2.3238
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3633 0.5138 0.8899
33 1 2.9174 -1.1204 -1.0287
34 1 2.7588 1.0462 -2.1182
35 1 1.0870 0.6162 -2.5525
36 1 0.6302 -0.9697 -4.3218
37 1 1.5344 -2.1829 -6.2920
38 1 5.3884 -2.5160 -6.7809
39 1 6.8374 -1.4828 -6.7726
40 1 6.8232 -3.0026 -5.8462
41 1 6.8533 -1.5886 -3.2610
42 1 7.5543 -0.5704 -4.5417
43 1 6.1771 0.0258 -3.5846
44 1 1.7229 -2.6612 0.4122
45 1 2.5522 -3.8258 2.4154
46 1 4.9435 -4.2052 7.5714
47 1 3.2517 -0.0548 4.3068
48 1 2.4317 1.1006 2.2946
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000776170716.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:21
Heat of formation + Delta-G solvation = 49.008986 kcal
Electronic energy + Delta-G solvation = -28430.840814 eV
Core-core repulsion = 24486.460842 eV
Total energy + Delta-G solvation = -3944.379972 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.92172 -40.87757 -39.11024 -37.84505 -36.88468 -34.87173 -34.23204 -32.77012
-31.84646 -31.28548 -29.37755 -29.11869 -27.39361 -27.05095 -26.67360 -24.02330
-23.78364 -23.22278 -22.25668 -21.33659 -19.77180 -18.89458 -18.65653 -18.25690
-17.05186 -16.78094 -16.55278 -16.30480 -16.27040 -15.77315 -15.65837 -15.48710
-15.40902 -15.29353 -14.98251 -14.60383 -14.43875 -14.15888 -13.96716 -13.71780
-13.51775 -13.40896 -13.37202 -13.09338 -12.97185 -12.90387 -12.77778 -12.49745
-12.30631 -12.21602 -12.10494 -11.83916 -11.69254 -11.54610 -11.18395 -11.08129
-10.80001 -10.04108 -9.77893 -9.40592 -8.91740 -8.81854 -8.47854 -6.16019
0.19175 0.33239 0.59985 0.68447 1.34274 1.42720 1.52771 1.76072
2.16943 2.78088 2.86755 3.12586 3.18005 3.43798 3.51710 3.61527
3.73364 3.90221 4.10694 4.22014 4.23902 4.34108 4.42015 4.43009
4.48546 4.49692 4.58852 4.61884 4.64253 4.71947 4.74142 4.75830
4.91283 4.93026 4.97514 4.99235 5.04921 5.14536 5.15708 5.28966
5.45356 5.51392 5.56610 5.69386 5.71359 5.89979 5.97527 6.02553
6.12637 6.23178 6.30718 6.48641 6.96962 7.34411 7.78439 8.75767
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013308 B = 0.002161 C = 0.001973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2103.443452 B =12952.631285 C =14189.433072
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.148 3.852
3 H 0.060 0.940
4 N -0.676 5.676
5 C 0.113 3.887
6 C 0.208 3.792
7 C -0.268 4.268
8 C 0.183 3.817
9 N -0.589 5.589
10 C 0.540 3.460
11 N -0.603 5.603
12 C 0.097 3.903
13 C 0.104 3.896
14 N -0.587 5.587
15 C -0.164 4.164
16 C -0.046 4.046
17 C -0.207 4.207
18 C 0.114 3.886
19 O -0.234 6.234
20 C -0.412 4.412
21 H 0.102 0.898
22 C -0.025 4.025
23 N -0.922 5.922
24 Si 1.019 2.981
25 H -0.251 1.251
26 H -0.268 1.268
27 H -0.269 1.269
28 C -0.242 4.242
29 C -0.062 4.062
30 H 0.074 0.926
31 H 0.053 0.947
32 H 0.056 0.944
33 H 0.339 0.661
34 H 0.047 0.953
35 H 0.117 0.883
36 H 0.170 0.830
37 H 0.200 0.800
38 H 0.084 0.916
39 H 0.073 0.927
40 H 0.064 0.936
41 H 0.045 0.955
42 H 0.092 0.908
43 H 0.066 0.934
44 H 0.141 0.859
45 H 0.108 0.892
46 H 0.272 0.728
47 H 0.119 0.881
48 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.760 10.405 -26.310 28.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.039 3.961
3 H 0.078 0.922
4 N -0.308 5.308
5 C -0.016 4.016
6 C 0.060 3.940
7 C -0.293 4.293
8 C 0.017 3.983
9 N -0.312 5.312
10 C 0.185 3.815
11 N -0.321 5.321
12 C -0.046 4.046
13 C -0.039 4.039
14 N -0.311 5.311
15 C -0.165 4.165
16 C -0.064 4.064
17 C -0.227 4.227
18 C 0.064 3.936
19 O -0.140 6.140
20 C -0.488 4.488
21 H 0.119 0.881
22 C -0.222 4.222
23 N -0.560 5.560
24 Si 0.839 3.161
25 H -0.174 1.174
26 H -0.193 1.193
27 H -0.194 1.194
28 C -0.261 4.261
29 C -0.080 4.080
30 H 0.093 0.907
31 H 0.072 0.928
32 H 0.075 0.925
33 H 0.157 0.843
34 H 0.065 0.935
35 H 0.135 0.865
36 H 0.188 0.812
37 H 0.217 0.783
38 H 0.103 0.897
39 H 0.091 0.909
40 H 0.083 0.917
41 H 0.063 0.937
42 H 0.111 0.889
43 H 0.085 0.915
44 H 0.159 0.841
45 H 0.126 0.874
46 H 0.081 0.919
47 H 0.136 0.864
48 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -3.095 9.679 -26.461 28.345
hybrid contribution 0.534 0.365 1.458 1.595
sum -2.561 10.044 -25.003 27.066
Atomic orbital electron populations
1.21758 0.92701 1.02297 1.01980 1.20214 0.96291 0.94726 0.84889
0.92174 1.60671 1.33538 1.32511 1.04056 1.20943 1.01833 0.92489
0.86385 1.21564 0.87345 0.90579 0.94503 1.22642 1.03338 1.05442
0.97903 1.23553 0.89864 0.89744 0.95157 1.67884 1.05862 1.26254
1.31235 1.19534 0.87639 0.88126 0.86243 1.46139 1.00053 1.58656
1.27215 1.21782 1.00182 0.96222 0.86392 1.21623 0.92453 0.98266
0.91529 1.67670 1.17986 1.22938 1.22535 1.19747 1.06470 0.93325
0.96932 1.20726 0.95704 0.94316 0.95673 1.20461 1.09266 0.99407
0.93536 1.19940 0.93522 0.92515 0.87616 1.83948 1.69970 1.36586
1.23545 1.21861 1.38233 0.91388 0.97322 0.88063 1.26613 0.96939
0.97834 1.00811 1.70196 1.44118 1.11018 1.30694 0.84521 0.77857
0.77815 0.75949 1.17389 1.19294 1.19396 1.21222 1.10204 0.93400
1.01267 1.20953 0.95455 1.00043 0.91547 0.90668 0.92826 0.92472
0.84274 0.93464 0.86490 0.81216 0.78297 0.89748 0.90896 0.91696
0.93657 0.88913 0.91472 0.84122 0.87389 0.91861 0.86353 0.84073
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.45 9.39 71.98 0.68 -1.77 16
2 C 0.15 3.24 2.81 44.17 0.12 3.37 16
3 H 0.06 1.20 7.66 -2.38 -0.02 1.18 16
4 N -0.68 -14.41 5.69 -499.47 -2.84 -17.25 16
5 C 0.11 1.96 5.84 85.56 0.50 2.46 16
6 C 0.21 4.26 6.33 42.59 0.27 4.53 16
7 C -0.27 -4.30 9.83 22.44 0.22 -4.08 16
8 C 0.18 2.99 11.30 84.71 0.96 3.95 16
9 N -0.59 -12.99 8.85 -197.98 -1.75 -14.74 16
10 C 0.54 13.20 8.18 261.48 2.14 15.34 16
11 N -0.60 -12.50 3.37 -761.03 -2.57 -15.07 16
12 C 0.10 1.43 10.71 127.77 1.37 2.80 16
13 C 0.10 1.84 10.49 127.77 1.34 3.18 16
14 N -0.59 -14.56 9.05 -186.03 -1.68 -16.24 16
15 C -0.16 -4.99 4.71 -19.83 -0.09 -5.08 16
16 C -0.05 -1.58 9.00 22.25 0.20 -1.38 16
17 C -0.21 -9.09 9.99 22.39 0.22 -8.87 16
18 C 0.11 5.78 6.65 22.58 0.15 5.93 16
19 O -0.23 -14.31 9.76 -22.80 -0.22 -14.53 16
20 C -0.41 -24.25 9.49 67.92 0.64 -23.61 16
21 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16
22 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16
23 N -0.92 -57.31 13.67 21.61 0.30 -57.02 16
24 Si 1.02 43.22 29.55 68.60 2.03 45.25 16
25 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16
26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16
27 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16
28 C -0.24 -10.53 9.17 22.39 0.21 -10.33 16
29 C -0.06 -2.08 9.66 22.25 0.21 -1.86 16
30 H 0.07 1.05 7.45 -2.39 -0.02 1.04 16
31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16
32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
33 H 0.34 8.77 7.99 -89.69 -0.72 8.05 16
34 H 0.05 0.87 8.06 -2.39 -0.02 0.85 16
35 H 0.12 1.44 7.36 -2.39 -0.02 1.43 16
36 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16
37 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16
38 H 0.08 1.39 6.76 -2.39 -0.02 1.37 16
39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16
40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
41 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16
42 H 0.09 1.11 8.07 -2.39 -0.02 1.09 16
43 H 0.07 1.35 7.33 -2.39 -0.02 1.34 16
44 H 0.14 4.23 7.72 -2.91 -0.02 4.21 16
45 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16
46 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16
47 H 0.12 5.25 5.64 -2.91 -0.02 5.24 16
48 H 0.14 3.77 8.03 -2.91 -0.02 3.74 16
Total: -1.00 -76.25 400.75 3.13 -73.13
By element:
Atomic # 1 Polarization: 32.60 SS G_CDS: 0.26 Total: 32.86 kcal
Atomic # 6 Polarization: -25.98 SS G_CDS: 9.60 Total: -16.38 kcal
Atomic # 7 Polarization: -111.77 SS G_CDS: -8.55 Total: -120.32 kcal
Atomic # 8 Polarization: -14.31 SS G_CDS: -0.22 Total: -14.53 kcal
Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal
Total: -76.25 3.13 -73.13 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776170716.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.136 kcal
(2) G-P(sol) polarization free energy of solvation -76.253 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.884 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.127 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.009 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds