Wall clock time and date at job start Sat Apr 11 2020 06:43:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09000 * 109.46927 * 2 1
4 4 N 1.46500 * 109.46702 * 240.00021 * 2 1 3
5 5 C 1.34772 * 120.00238 * 85.00459 * 4 2 1
6 6 O 1.21586 * 120.00089 * 359.97438 * 5 4 2
7 7 C 1.47584 * 119.99954 * 179.97438 * 5 4 2
8 8 C 1.40081 * 120.36058 * 359.96907 * 7 5 4
9 9 N 1.31164 * 121.12194 * 180.02562 * 8 7 5
10 10 C 1.33364 * 121.67546 * 0.02562 * 9 8 7
11 11 C 1.41856 * 133.17023 * 179.97438 * 10 9 8
12 12 C 1.34451 * 107.95859 * 180.02562 * 11 10 9
13 13 N 1.36537 * 109.71783 * 0.02562 * 12 11 10
14 14 H 0.97001 * 125.60221 * 180.02562 * 13 12 11
15 15 C 1.37858 * 108.80692 * 0.02562 * 13 12 11
16 16 C 1.38723 * 133.57345 * 179.97438 * 15 13 12
17 17 C 1.52998 * 109.46922 * 120.00026 * 2 1 3
18 18 C 1.53037 * 109.46194 * 60.06816 * 17 2 1
19 19 C 1.53194 * 109.31169 * 178.61451 * 18 17 2
20 20 N 1.46920 * 108.77846 * 54.63060 * 19 18 17
21 21 C 1.36942 * 120.63047 * 126.41349 * 20 19 18
22 22 H 1.08000 * 120.00023 * 207.66373 * 21 20 19
23 23 C 1.38811 * 119.99535 * 27.65936 * 21 20 19
24 24 N 1.31609 * 120.00566 * 17.38084 * 23 21 20
25 25 Si 1.86807 * 119.99607 * 197.37744 * 23 21 20
26 26 H 1.48500 * 109.47367 * 0.02562 * 25 23 21
27 27 H 1.48500 * 109.47035 * 120.00116 * 25 23 21
28 28 H 1.48495 * 109.47286 * 240.00338 * 25 23 21
29 29 C 1.46931 * 118.74078 * 306.39567 * 20 19 18
30 30 C 1.53042 * 109.45970 * 299.99755 * 17 2 1
31 31 H 1.09000 * 109.46927 * 179.97438 * 1 2 3
32 32 H 1.09008 * 109.46763 * 300.00066 * 1 2 3
33 33 H 1.08995 * 109.46876 * 60.00090 * 1 2 3
34 34 H 0.97001 * 119.99778 * 264.99167 * 4 2 1
35 35 H 1.08000 * 119.44154 * 0.05413 * 8 7 5
36 36 H 1.08003 * 126.01616 * 0.03877 * 11 10 9
37 37 H 1.07998 * 125.14461 * 180.26040 * 12 11 10
38 38 H 1.08002 * 120.90942 * 359.97438 * 16 15 13
39 39 H 1.09005 * 109.45858 * 180.02562 * 17 2 1
40 40 H 1.09002 * 109.49631 * 298.56033 * 18 17 2
41 41 H 1.09002 * 109.49769 * 58.66371 * 18 17 2
42 42 H 1.09008 * 109.58761 * 294.84306 * 19 18 17
43 43 H 1.09002 * 109.58571 * 174.42358 * 19 18 17
44 44 H 0.97003 * 120.00263 * 179.97438 * 24 23 21
45 45 H 1.09000 * 109.58165 * 293.81772 * 29 20 19
46 46 H 1.08996 * 109.58144 * 173.39388 * 29 20 19
47 47 H 1.09006 * 109.49694 * 301.33724 * 30 17 2
48 48 H 1.08998 * 109.49683 * 61.40147 * 30 17 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1470 -0.0183 -2.3571
6 8 1.8576 1.1613 -2.4119
7 6 2.6394 -0.7140 -3.5620
8 6 2.9757 -2.0727 -3.5073
9 7 3.4152 -2.7056 -4.5688
10 6 3.5616 -2.0880 -5.7417
11 6 4.0059 -2.5206 -7.0176
12 6 3.9531 -1.4689 -7.8535
13 7 3.4960 -0.3705 -7.1836
14 1 3.3684 0.5117 -7.5662
15 6 3.2457 -0.7209 -5.8740
16 6 2.7792 -0.0227 -4.7698
17 6 2.0400 -0.7213 1.2492
18 6 1.5311 -2.1645 1.2481
19 6 2.0720 -2.8934 2.4823
20 7 1.7087 -2.1263 3.6816
21 6 1.0455 -2.7259 4.7189
22 1 0.4036 -2.1400 5.3600
23 6 1.1985 -4.0866 4.9463
24 7 2.2121 -4.7335 4.4112
25 14 -0.0344 -4.9998 6.0120
26 1 -1.0730 -4.0522 6.4902
27 1 -0.6762 -6.0760 5.2151
28 1 0.6655 -5.5972 7.1775
29 6 2.0707 -0.7038 3.7469
30 6 1.5297 0.0004 2.4986
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5139 0.8901
33 1 -0.3633 0.5138 -0.8900
34 1 2.2490 -1.6318 -1.1526
35 1 2.8709 -2.6085 -2.5755
36 1 4.3293 -3.5191 -7.2725
37 1 4.2268 -1.4906 -8.8980
38 1 2.5289 1.0254 -4.8413
39 1 3.1300 -0.7208 1.2493
40 1 0.4414 -2.1661 1.2733
41 1 1.8755 -2.6711 0.3465
42 1 3.1570 -2.9723 2.4138
43 1 1.6340 -3.8899 2.5393
44 1 2.3191 -5.6844 4.5704
45 1 3.1555 -0.6041 3.7816
46 1 1.6318 -0.2557 4.6384
47 1 1.8732 1.0349 2.4870
48 1 0.4400 -0.0210 2.5116
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000997636900.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:32
Heat of formation + Delta-G solvation = 51.999817 kcal
Electronic energy + Delta-G solvation = -29375.042590 eV
Core-core repulsion = 25430.792311 eV
Total energy + Delta-G solvation = -3944.250280 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.08907 -40.10265 -38.32959 -37.59202 -35.32564 -33.24393 -32.93850 -31.24069
-30.50322 -30.00782 -29.70051 -28.58473 -25.50086 -24.50584 -23.87781 -23.03826
-22.31063 -21.25335 -20.83964 -20.30826 -18.82750 -18.65283 -17.52615 -16.92162
-16.60349 -16.33487 -15.53924 -15.37281 -14.87565 -14.78857 -14.57570 -14.18242
-13.91465 -13.74753 -13.60673 -13.50763 -13.22060 -13.04539 -12.87278 -12.75912
-12.60321 -12.45656 -12.15341 -11.61063 -11.49129 -11.18046 -10.83786 -10.71124
-10.66231 -10.49597 -10.32559 -10.13458 -10.10282 -9.86023 -9.59374 -9.48847
-9.34297 -9.03769 -8.81655 -8.49403 -8.44806 -6.64991 -5.77148 -3.18682
0.29317 0.97930 2.09797 2.49507 2.91032 3.17014 3.38205 3.46500
3.48461 3.73426 3.91126 4.30565 4.51270 4.52990 4.62471 4.65152
4.84377 4.94266 5.08263 5.18941 5.26875 5.35700 5.42071 5.54631
5.57250 5.66996 5.71724 5.76851 5.87415 5.97589 6.03820 6.05112
6.15765 6.17578 6.29172 6.36812 6.47204 6.50125 6.57043 6.63363
6.75045 6.78593 6.84470 6.91199 7.02595 7.38738 7.51002 7.67419
7.71569 7.81886 8.16776 8.47056 9.23671 9.87426 10.43987 11.31286
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.018301 B = 0.002266 C = 0.002083
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1529.629060 B =12351.662658 C =13437.742785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.146 3.854
3 H 0.084 0.916
4 N -0.713 5.713
5 C 0.566 3.434
6 O -0.544 6.544
7 C -0.176 4.176
8 C 0.134 3.866
9 N -0.452 5.452
10 C 0.113 3.887
11 C -0.198 4.198
12 C 0.078 3.922
13 N -0.581 5.581
14 H 0.422 0.578
15 C 0.023 3.977
16 C -0.014 4.014
17 C -0.086 4.086
18 C -0.137 4.137
19 C 0.171 3.829
20 N -0.592 5.592
21 C -0.250 4.250
22 H 0.065 0.935
23 C 0.001 3.999
24 N -0.903 5.903
25 Si 0.900 3.100
26 H -0.278 1.278
27 H -0.289 1.289
28 H -0.291 1.291
29 C 0.145 3.855
30 C -0.126 4.126
31 H 0.063 0.937
32 H 0.070 0.930
33 H 0.051 0.949
34 H 0.401 0.599
35 H 0.162 0.838
36 H 0.155 0.845
37 H 0.181 0.819
38 H 0.145 0.855
39 H 0.068 0.932
40 H 0.062 0.938
41 H 0.042 0.958
42 H 0.017 0.983
43 H 0.087 0.913
44 H 0.253 0.747
45 H 0.016 0.984
46 H 0.053 0.947
47 H 0.051 0.949
48 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.542 8.895 -24.413 26.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.043 3.957
3 H 0.102 0.898
4 N -0.364 5.364
5 C 0.353 3.647
6 O -0.423 6.423
7 C -0.183 4.183
8 C -0.036 4.036
9 N -0.160 5.160
10 C -0.018 4.018
11 C -0.224 4.224
12 C -0.052 4.052
13 N -0.184 5.184
14 H 0.260 0.740
15 C -0.086 4.086
16 C -0.043 4.043
17 C -0.106 4.106
18 C -0.176 4.176
19 C 0.045 3.955
20 N -0.315 5.315
21 C -0.379 4.379
22 H 0.083 0.917
23 C -0.198 4.198
24 N -0.547 5.547
25 Si 0.730 3.270
26 H -0.203 1.203
27 H -0.216 1.216
28 H -0.218 1.218
29 C 0.019 3.981
30 C -0.165 4.165
31 H 0.082 0.918
32 H 0.089 0.911
33 H 0.070 0.930
34 H 0.238 0.762
35 H 0.179 0.821
36 H 0.173 0.827
37 H 0.198 0.802
38 H 0.162 0.838
39 H 0.087 0.913
40 H 0.081 0.919
41 H 0.061 0.939
42 H 0.035 0.965
43 H 0.106 0.894
44 H 0.063 0.937
45 H 0.034 0.966
46 H 0.072 0.928
47 H 0.070 0.930
48 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 2.592 8.777 -24.472 26.128
hybrid contribution -0.681 0.236 0.253 0.764
sum 1.911 9.012 -24.220 25.913
Atomic orbital electron populations
1.22234 0.95255 1.02622 1.01985 1.21146 0.94314 0.96823 0.83456
0.89823 1.46145 1.66372 1.14370 1.09551 1.17865 0.77677 0.86348
0.82841 1.90759 1.50946 1.15517 1.85059 1.20659 1.07160 0.95843
0.94607 1.22827 0.93706 0.90335 0.96758 1.67208 1.12836 1.38113
0.97836 1.19225 0.99924 0.89345 0.93274 1.20619 1.10881 1.00319
0.90549 1.22074 0.99299 0.85374 0.98479 1.41749 1.56848 1.12219
1.07586 0.73990 1.19013 1.06475 0.96592 0.86491 1.20521 0.94685
1.00173 0.88871 1.21333 1.00127 0.96345 0.92746 1.22307 1.01168
0.94414 0.99745 1.20768 0.96359 0.95830 0.82567 1.44052 1.66809
1.04696 1.15898 1.19225 1.19156 0.91964 1.07596 0.91694 1.25022
0.97156 0.98253 0.99319 1.70036 1.27911 1.08806 1.47975 0.86259
0.81083 0.79838 0.79821 1.20298 1.21586 1.21796 1.20893 0.96234
0.86316 0.94668 1.22070 1.01130 0.97641 0.95681 0.91838 0.91130
0.92981 0.76181 0.82067 0.82740 0.80154 0.83761 0.91311 0.91937
0.93900 0.96535 0.89438 0.93721 0.96584 0.92807 0.93049 0.91703
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.22 8.78 37.16 0.33 -1.89 16
2 C 0.15 2.03 2.40 -67.93 -0.16 1.87 16
3 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16
4 N -0.71 -9.10 4.95 -54.83 -0.27 -9.37 16
5 C 0.57 7.74 7.73 -12.45 -0.10 7.64 16
6 O -0.54 -8.93 16.06 5.29 0.08 -8.85 16
7 C -0.18 -2.12 5.89 -104.79 -0.62 -2.74 16
8 C 0.13 1.58 10.69 -17.15 -0.18 1.39 16
9 N -0.45 -5.84 10.40 -10.70 -0.11 -5.95 16
10 C 0.11 1.30 7.32 -84.80 -0.62 0.68 16
11 C -0.20 -1.64 10.84 -39.54 -0.43 -2.07 16
12 C 0.08 0.41 11.82 -16.79 -0.20 0.21 16
13 N -0.58 -3.54 6.14 -10.66 -0.07 -3.60 16
14 H 0.42 1.22 8.96 -40.82 -0.37 0.86 16
15 C 0.02 0.23 7.27 -83.95 -0.61 -0.38 16
16 C -0.01 -0.15 9.72 -38.80 -0.38 -0.52 16
17 C -0.09 -1.34 2.14 -90.58 -0.19 -1.53 16
18 C -0.14 -2.38 4.81 -26.61 -0.13 -2.50 16
19 C 0.17 3.89 5.31 -3.71 -0.02 3.87 16
20 N -0.59 -14.41 3.00 -172.32 -0.52 -14.93 16
21 C -0.25 -6.75 9.59 -15.06 -0.14 -6.90 16
22 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16
23 C 0.00 0.02 4.91 -17.44 -0.09 -0.06 16
24 N -0.90 -25.91 11.19 55.49 0.62 -25.29 16
25 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16
26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16
27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
29 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16
30 C -0.13 -2.07 4.97 -26.61 -0.13 -2.20 16
31 H 0.06 0.88 6.46 -51.93 -0.34 0.54 16
32 H 0.07 0.94 6.46 -51.92 -0.34 0.60 16
33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
34 H 0.40 4.55 4.88 -40.82 -0.20 4.35 16
35 H 0.16 1.57 6.39 -52.49 -0.34 1.23 16
36 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16
37 H 0.18 0.17 8.06 -52.49 -0.42 -0.25 16
38 H 0.14 1.41 7.72 -52.49 -0.41 1.01 16
39 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16
40 H 0.06 1.12 6.51 -51.93 -0.34 0.79 16
41 H 0.04 0.64 6.46 -51.93 -0.34 0.30 16
42 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16
43 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16
44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16
45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16
46 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16
47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
48 H 0.06 1.09 6.51 -51.93 -0.34 0.75 16
LS Contribution 378.26 15.07 5.70 5.70
Total: -1.00 -33.92 378.26 -9.90 -43.82
By element:
Atomic # 1 Polarization: 10.76 SS G_CDS: -6.61 Total: 4.15 kcal
Atomic # 6 Polarization: 1.50 SS G_CDS: -3.70 Total: -2.20 kcal
Atomic # 7 Polarization: -58.80 SS G_CDS: -0.34 Total: -59.14 kcal
Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.85 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -33.92 -9.90 -43.82 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997636900.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.816 kcal
(2) G-P(sol) polarization free energy of solvation -33.916 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.000 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds