Wall clock time and date at job start Sat Apr 11 2020 06:43:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09000 * 109.46927 * 2 1
4 4 N 1.46500 * 109.46702 * 240.00021 * 2 1 3
5 5 C 1.34772 * 120.00238 * 85.00459 * 4 2 1
6 6 O 1.21586 * 120.00089 * 359.97438 * 5 4 2
7 7 C 1.47584 * 119.99954 * 179.97438 * 5 4 2
8 8 C 1.40081 * 120.36058 * 359.96907 * 7 5 4
9 9 N 1.31164 * 121.12194 * 180.02562 * 8 7 5
10 10 C 1.33364 * 121.67546 * 0.02562 * 9 8 7
11 11 C 1.41856 * 133.17023 * 179.97438 * 10 9 8
12 12 C 1.34451 * 107.95859 * 180.02562 * 11 10 9
13 13 N 1.36537 * 109.71783 * 0.02562 * 12 11 10
14 14 H 0.97001 * 125.60221 * 180.02562 * 13 12 11
15 15 C 1.37858 * 108.80692 * 0.02562 * 13 12 11
16 16 C 1.38723 * 133.57345 * 179.97438 * 15 13 12
17 17 C 1.52998 * 109.46922 * 120.00026 * 2 1 3
18 18 C 1.53037 * 109.46194 * 60.06816 * 17 2 1
19 19 C 1.53194 * 109.31169 * 178.61451 * 18 17 2
20 20 N 1.46920 * 108.77846 * 54.63060 * 19 18 17
21 21 C 1.36942 * 120.63047 * 126.41349 * 20 19 18
22 22 H 1.08000 * 120.00023 * 207.66373 * 21 20 19
23 23 C 1.38811 * 119.99535 * 27.65936 * 21 20 19
24 24 N 1.31609 * 120.00566 * 17.38084 * 23 21 20
25 25 Si 1.86807 * 119.99607 * 197.37744 * 23 21 20
26 26 H 1.48500 * 109.47367 * 0.02562 * 25 23 21
27 27 H 1.48500 * 109.47035 * 120.00116 * 25 23 21
28 28 H 1.48495 * 109.47286 * 240.00338 * 25 23 21
29 29 C 1.46931 * 118.74078 * 306.39567 * 20 19 18
30 30 C 1.53042 * 109.45970 * 299.99755 * 17 2 1
31 31 H 1.09000 * 109.46927 * 179.97438 * 1 2 3
32 32 H 1.09008 * 109.46763 * 300.00066 * 1 2 3
33 33 H 1.08995 * 109.46876 * 60.00090 * 1 2 3
34 34 H 0.97001 * 119.99778 * 264.99167 * 4 2 1
35 35 H 1.08000 * 119.44154 * 0.05413 * 8 7 5
36 36 H 1.08003 * 126.01616 * 0.03877 * 11 10 9
37 37 H 1.07998 * 125.14461 * 180.26040 * 12 11 10
38 38 H 1.08002 * 120.90942 * 359.97438 * 16 15 13
39 39 H 1.09005 * 109.45858 * 180.02562 * 17 2 1
40 40 H 1.09002 * 109.49631 * 298.56033 * 18 17 2
41 41 H 1.09002 * 109.49769 * 58.66371 * 18 17 2
42 42 H 1.09008 * 109.58761 * 294.84306 * 19 18 17
43 43 H 1.09002 * 109.58571 * 174.42358 * 19 18 17
44 44 H 0.97003 * 120.00263 * 179.97438 * 24 23 21
45 45 H 1.09000 * 109.58165 * 293.81772 * 29 20 19
46 46 H 1.08996 * 109.58144 * 173.39388 * 29 20 19
47 47 H 1.09006 * 109.49694 * 301.33724 * 30 17 2
48 48 H 1.08998 * 109.49683 * 61.40147 * 30 17 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1470 -0.0183 -2.3571
6 8 1.8576 1.1613 -2.4119
7 6 2.6394 -0.7140 -3.5620
8 6 2.9757 -2.0727 -3.5073
9 7 3.4152 -2.7056 -4.5688
10 6 3.5616 -2.0880 -5.7417
11 6 4.0059 -2.5206 -7.0176
12 6 3.9531 -1.4689 -7.8535
13 7 3.4960 -0.3705 -7.1836
14 1 3.3684 0.5117 -7.5662
15 6 3.2457 -0.7209 -5.8740
16 6 2.7792 -0.0227 -4.7698
17 6 2.0400 -0.7213 1.2492
18 6 1.5311 -2.1645 1.2481
19 6 2.0720 -2.8934 2.4823
20 7 1.7087 -2.1263 3.6816
21 6 1.0455 -2.7259 4.7189
22 1 0.4036 -2.1400 5.3600
23 6 1.1985 -4.0866 4.9463
24 7 2.2121 -4.7335 4.4112
25 14 -0.0344 -4.9998 6.0120
26 1 -1.0730 -4.0522 6.4902
27 1 -0.6762 -6.0760 5.2151
28 1 0.6655 -5.5972 7.1775
29 6 2.0707 -0.7038 3.7469
30 6 1.5297 0.0004 2.4986
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5139 0.8901
33 1 -0.3633 0.5138 -0.8900
34 1 2.2490 -1.6318 -1.1526
35 1 2.8709 -2.6085 -2.5755
36 1 4.3293 -3.5191 -7.2725
37 1 4.2268 -1.4906 -8.8980
38 1 2.5289 1.0254 -4.8413
39 1 3.1300 -0.7208 1.2493
40 1 0.4414 -2.1661 1.2733
41 1 1.8755 -2.6711 0.3465
42 1 3.1570 -2.9723 2.4138
43 1 1.6340 -3.8899 2.5393
44 1 2.3191 -5.6844 4.5704
45 1 3.1555 -0.6041 3.7816
46 1 1.6318 -0.2557 4.6384
47 1 1.8732 1.0349 2.4870
48 1 0.4400 -0.0210 2.5116
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000997636900.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:31
Heat of formation + Delta-G solvation = 29.632520 kcal
Electronic energy + Delta-G solvation = -29376.012509 eV
Core-core repulsion = 25430.792311 eV
Total energy + Delta-G solvation = -3945.220198 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.77027 -41.17363 -39.59524 -38.53952 -36.81020 -34.56874 -33.98467 -32.76217
-31.58604 -31.18677 -30.82245 -29.77652 -27.13254 -25.61223 -24.67899 -24.41092
-23.84210 -22.23088 -21.82205 -21.46110 -20.17510 -19.58130 -18.64005 -18.23120
-17.66906 -17.27100 -16.78429 -16.49325 -16.26035 -15.81654 -15.65676 -15.55071
-15.36992 -15.09705 -14.69632 -14.58564 -14.23040 -14.11754 -14.05956 -13.92607
-13.63606 -13.45528 -13.44635 -13.11827 -12.94322 -12.85580 -12.55607 -12.41965
-12.14172 -11.89636 -11.70219 -11.51049 -11.45019 -11.36654 -11.09569 -10.94255
-10.49699 -10.40816 -10.13751 -9.55675 -9.13411 -8.63523 -7.84039 -5.28107
-0.49578 0.18270 1.46435 1.46987 1.49455 1.59379 1.86720 1.99213
2.24489 2.53662 2.88471 3.20788 3.30090 3.62894 3.71082 3.73240
3.81024 3.84288 3.93202 3.99951 4.08315 4.16950 4.42180 4.42963
4.47414 4.59753 4.61812 4.67104 4.75532 4.81343 4.87128 4.97872
4.98546 5.01673 5.06441 5.20131 5.27906 5.31345 5.33466 5.35801
5.41603 5.47481 5.51243 5.61903 5.71303 5.81017 5.85702 6.43090
6.47696 6.51376 6.90971 7.13199 7.19398 7.91837 8.42525 9.22015
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.018301 B = 0.002266 C = 0.002083
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1529.629060 B =12351.662658 C =13437.742785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.157 3.843
3 H 0.082 0.918
4 N -0.708 5.708
5 C 0.572 3.428
6 O -0.575 6.575
7 C -0.196 4.196
8 C 0.130 3.870
9 N -0.484 5.484
10 C 0.088 3.912
11 C -0.236 4.236
12 C 0.120 3.880
13 N -0.566 5.566
14 H 0.440 0.560
15 C 0.011 3.989
16 C -0.010 4.010
17 C -0.076 4.076
18 C -0.122 4.122
19 C 0.176 3.824
20 N -0.610 5.610
21 C -0.257 4.257
22 H 0.065 0.935
23 C -0.052 4.052
24 N -0.934 5.934
25 Si 0.963 3.037
26 H -0.267 1.267
27 H -0.290 1.290
28 H -0.294 1.294
29 C 0.140 3.860
30 C -0.115 4.115
31 H 0.060 0.940
32 H 0.075 0.925
33 H 0.049 0.951
34 H 0.408 0.592
35 H 0.172 0.828
36 H 0.163 0.837
37 H 0.234 0.766
38 H 0.152 0.848
39 H 0.066 0.934
40 H 0.060 0.940
41 H 0.068 0.932
42 H -0.006 1.006
43 H 0.053 0.947
44 H 0.249 0.751
45 H 0.011 0.989
46 H 0.053 0.947
47 H 0.079 0.921
48 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.209 10.229 -27.055 29.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.053 3.947
3 H 0.100 0.900
4 N -0.360 5.360
5 C 0.359 3.641
6 O -0.456 6.456
7 C -0.203 4.203
8 C -0.040 4.040
9 N -0.192 5.192
10 C -0.042 4.042
11 C -0.260 4.260
12 C -0.012 4.012
13 N -0.170 5.170
14 H 0.281 0.719
15 C -0.099 4.099
16 C -0.039 4.039
17 C -0.095 4.095
18 C -0.161 4.161
19 C 0.050 3.950
20 N -0.334 5.334
21 C -0.388 4.388
22 H 0.083 0.917
23 C -0.247 4.247
24 N -0.581 5.581
25 Si 0.792 3.208
26 H -0.192 1.192
27 H -0.217 1.217
28 H -0.222 1.222
29 C 0.015 3.985
30 C -0.154 4.154
31 H 0.079 0.921
32 H 0.094 0.906
33 H 0.068 0.932
34 H 0.246 0.754
35 H 0.189 0.811
36 H 0.181 0.819
37 H 0.250 0.750
38 H 0.170 0.830
39 H 0.084 0.916
40 H 0.079 0.921
41 H 0.086 0.914
42 H 0.012 0.988
43 H 0.071 0.929
44 H 0.058 0.942
45 H 0.029 0.971
46 H 0.071 0.929
47 H 0.098 0.902
48 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 2.253 10.150 -27.127 29.052
hybrid contribution -0.484 -0.149 0.937 1.065
sum 1.769 10.001 -26.190 28.090
Atomic orbital electron populations
1.22186 0.94765 1.02495 1.02145 1.20934 0.94509 0.96390 0.82854
0.90001 1.46062 1.66125 1.14639 1.09158 1.18028 0.76910 0.85907
0.83214 1.90734 1.52534 1.16765 1.85559 1.20498 1.09235 0.96064
0.94517 1.22969 0.93559 0.90371 0.97116 1.67208 1.14210 1.39032
0.98767 1.19829 1.00088 0.90434 0.93867 1.20938 1.13073 1.02049
0.89990 1.22868 0.94979 0.83548 0.99842 1.41869 1.55501 1.13481
1.06161 0.71876 1.18982 1.06937 0.96123 0.87881 1.20642 0.93904
1.00449 0.88904 1.21195 0.99884 0.95040 0.93412 1.22091 1.00752
0.95316 0.97975 1.20599 0.94842 0.95007 0.84554 1.44334 1.66898
1.06238 1.15890 1.19536 1.18957 0.92366 1.07923 0.91710 1.25743
0.98779 0.99099 1.01116 1.70185 1.29575 1.08635 1.49697 0.85272
0.79080 0.78522 0.77974 1.19173 1.21707 1.22158 1.21054 0.96058
0.84577 0.96843 1.21939 1.01053 0.98647 0.93805 0.92072 0.90602
0.93181 0.75388 0.81090 0.81940 0.74977 0.83046 0.91560 0.92148
0.91388 0.98799 0.92906 0.94214 0.97132 0.92885 0.90238 0.91549
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.04 8.78 71.98 0.63 -3.41 16
2 C 0.16 4.13 2.40 44.99 0.11 4.24 16
3 H 0.08 2.27 7.58 -2.39 -0.02 2.25 16
4 N -0.71 -17.46 4.95 -445.65 -2.21 -19.66 16
5 C 0.57 15.35 7.73 86.71 0.67 16.02 16
6 O -0.57 -18.56 16.06 -3.99 -0.06 -18.62 16
7 C -0.20 -4.71 5.89 -19.97 -0.12 -4.83 16
8 C 0.13 3.09 10.69 85.24 0.91 4.00 16
9 N -0.48 -12.64 10.40 -187.77 -1.95 -14.59 16
10 C 0.09 1.97 7.32 40.47 0.30 2.27 16
11 C -0.24 -3.45 10.84 22.30 0.24 -3.21 16
12 C 0.12 0.78 11.82 83.09 0.98 1.76 16
13 N -0.57 -5.07 6.14 -187.65 -1.15 -6.22 16
14 H 0.44 0.91 8.96 -92.71 -0.83 0.08 16
15 C 0.01 0.20 7.27 38.97 0.28 0.48 16
16 C -0.01 -0.22 9.72 22.78 0.22 0.00 16
17 C -0.08 -2.27 2.14 -10.77 -0.02 -2.30 16
18 C -0.12 -4.19 4.81 30.67 0.15 -4.04 16
19 C 0.18 8.22 5.31 86.36 0.46 8.67 16
20 N -0.61 -30.14 3.00 -699.08 -2.09 -32.24 16
21 C -0.26 -14.11 9.59 84.03 0.81 -13.30 16
22 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16
23 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16
24 N -0.93 -55.31 11.19 21.65 0.24 -55.07 16
25 Si 0.96 45.04 29.59 68.60 2.03 47.07 16
26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
27 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16
28 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16
29 C 0.14 5.67 6.52 86.36 0.56 6.23 16
30 C -0.12 -3.60 4.97 30.67 0.15 -3.45 16
31 H 0.06 1.59 6.46 -2.39 -0.02 1.58 16
32 H 0.08 1.86 6.46 -2.38 -0.02 1.84 16
33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16
34 H 0.41 8.91 4.88 -92.71 -0.45 8.46 16
35 H 0.17 3.38 6.39 -2.91 -0.02 3.36 16
36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16
37 H 0.23 -0.99 8.06 -2.91 -0.02 -1.01 16
38 H 0.15 2.84 7.72 -2.91 -0.02 2.82 16
39 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16
40 H 0.06 2.12 6.51 -2.39 -0.02 2.11 16
41 H 0.07 1.97 6.46 -2.39 -0.02 1.95 16
42 H -0.01 -0.31 8.14 -2.38 -0.02 -0.32 16
43 H 0.05 2.83 6.04 -2.39 -0.01 2.82 16
44 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16
45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16
46 H 0.05 2.11 7.93 -2.39 -0.02 2.10 16
47 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16
48 H 0.07 2.09 6.51 -2.39 -0.02 2.08 16
Total: -1.00 -76.29 378.26 1.28 -75.00
By element:
Atomic # 1 Polarization: 17.96 SS G_CDS: -0.27 Total: 17.69 kcal
Atomic # 6 Polarization: -0.11 SS G_CDS: 6.75 Total: 6.64 kcal
Atomic # 7 Polarization: -120.62 SS G_CDS: -7.16 Total: -127.78 kcal
Atomic # 8 Polarization: -18.56 SS G_CDS: -0.06 Total: -18.62 kcal
Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal
Total: -76.29 1.28 -75.00 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997636900.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.636 kcal
(2) G-P(sol) polarization free energy of solvation -76.287 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.633 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds