Wall clock time and date at job start Sat Apr 11 2020 06:44:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08998 * 109.47608 * 2 1
4 4 C 1.53006 * 109.47370 * 239.99521 * 2 1 3
5 5 C 1.52999 * 109.46997 * 175.00241 * 4 2 1
6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 2
7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4
8 8 N 1.46506 * 109.46691 * 179.97438 * 7 6 5
9 9 C 1.36938 * 119.99597 * 179.97438 * 8 7 6
10 10 H 1.07999 * 120.00321 * 0.02562 * 9 8 7
11 11 C 1.38815 * 119.99825 * 180.02562 * 9 8 7
12 12 N 1.31617 * 119.99912 * 0.02562 * 11 9 8
13 13 Si 1.86795 * 120.00119 * 180.02562 * 11 9 8
14 14 H 1.48502 * 109.47317 * 0.02562 * 13 11 9
15 15 H 1.48506 * 109.47211 * 120.00274 * 13 11 9
16 16 H 1.48507 * 109.47345 * 240.00036 * 13 11 9
17 17 N 1.46507 * 109.47271 * 119.99615 * 2 1 3
18 18 C 1.34775 * 119.99633 * 275.00510 * 17 2 1
19 19 O 1.21493 * 120.00575 * 359.97438 * 18 17 2
20 20 C 1.48284 * 119.99441 * 180.02562 * 18 17 2
21 21 C 1.40374 * 119.18355 * 179.72497 * 20 18 17
22 22 C 1.36566 * 119.82081 * 179.75788 * 21 20 18
23 23 C 1.40541 * 118.06034 * 0.49724 * 22 21 20
24 24 C 1.40518 * 122.21679 * 179.72179 * 23 22 21
25 25 C 1.36261 * 118.69011 * 180.02562 * 24 23 22
26 26 N 1.32587 * 121.79931 * 359.97438 * 25 24 23
27 27 C 1.31108 * 122.87804 * 0.02562 * 26 25 24
28 28 C 1.40866 * 119.95757 * 0.02562 * 27 26 25
29 29 N 1.31892 * 119.19185 * 359.97438 * 20 18 17
30 30 H 1.08994 * 109.46630 * 60.00427 * 1 2 3
31 31 H 1.09000 * 109.46998 * 180.02562 * 1 2 3
32 32 H 1.09002 * 109.47083 * 300.00419 * 1 2 3
33 33 H 1.09000 * 109.46866 * 55.00029 * 4 2 1
34 34 H 1.09001 * 109.46611 * 295.00146 * 4 2 1
35 35 H 1.09000 * 109.47486 * 60.00167 * 5 4 2
36 36 H 1.09001 * 109.47362 * 299.99445 * 5 4 2
37 37 H 1.08993 * 109.46955 * 300.00075 * 6 5 4
38 38 H 1.09000 * 109.47050 * 59.99904 * 6 5 4
39 39 H 1.08993 * 109.47839 * 299.99931 * 7 6 5
40 40 H 1.09000 * 109.47160 * 60.00369 * 7 6 5
41 41 H 0.96999 * 120.00076 * 0.02562 * 8 7 6
42 42 H 0.97000 * 120.00284 * 180.02562 * 12 11 9
43 43 H 0.96993 * 120.00030 * 94.99690 * 17 2 1
44 44 H 1.07995 * 120.08724 * 359.97438 * 21 20 18
45 45 H 1.08001 * 120.96650 * 180.26935 * 22 21 20
46 46 H 1.08004 * 120.65526 * 0.04590 * 24 23 22
47 47 H 1.07996 * 119.10014 * 179.97438 * 25 24 23
48 48 H 1.08000 * 120.02426 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7214 -1.2492
5 6 3.5649 -0.6134 -1.3135
6 6 4.0750 -1.3354 -2.5624
7 6 5.5997 -1.2269 -2.6271
8 7 6.0882 -1.9186 -3.8226
9 6 7.4302 -1.9543 -4.0927
10 1 8.1285 -1.4729 -3.4242
11 6 7.8930 -2.6093 -5.2257
12 7 7.0419 -3.1956 -6.0406
13 14 9.7236 -2.6586 -5.5937
14 1 10.4621 -1.9307 -4.5306
15 1 10.1822 -4.0705 -5.6363
16 1 9.9822 -2.0144 -6.9066
17 7 2.0184 -0.6906 1.1963
18 6 2.1470 -0.0181 2.3572
19 8 1.8584 1.1608 2.4116
20 6 2.6419 -0.7169 3.5678
21 6 2.7748 0.0014 4.7665
22 6 3.2246 -0.6305 5.8905
23 6 3.5513 -1.9942 5.7964
24 6 4.0273 -2.7281 6.8961
25 6 4.3227 -4.0471 6.7239
26 7 4.1722 -4.6495 5.5524
27 6 3.7335 -4.0290 4.4841
28 6 3.3997 -2.6621 4.5519
29 7 2.9510 -1.9968 3.4905
30 1 -0.3632 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.6055 -0.2619 -2.1370
34 1 1.7517 -1.7716 -1.2054
35 1 3.9995 -1.0729 -0.4258
36 1 3.8533 0.4368 -1.3574
37 1 3.7866 -2.3855 -2.5182
38 1 3.6404 -0.8763 -3.4504
39 1 5.8878 -0.1766 -2.6715
40 1 6.0346 -1.6857 -1.7392
41 1 5.4609 -2.3507 -4.4232
42 1 7.3652 -3.6537 -6.8322
43 1 2.2491 -1.6317 1.1528
44 1 2.5186 1.0500 4.8005
45 1 3.3298 -0.0968 6.8236
46 1 4.1562 -2.2561 7.8590
47 1 4.6894 -4.6173 7.5645
48 1 3.6282 -4.5653 3.5526
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001171832148.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:25
Heat of formation + Delta-G solvation = 23.617132 kcal
Electronic energy + Delta-G solvation = -28091.007821 eV
Core-core repulsion = 24145.526776 eV
Total energy + Delta-G solvation = -3945.481045 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.79161 -40.15147 -38.32314 -36.97133 -35.28049 -34.42813 -33.23438 -32.17315
-31.62660 -30.79925 -30.13083 -27.43422 -26.21692 -24.90524 -24.17632 -23.21679
-22.46760 -21.53876 -20.77632 -20.60917 -19.09193 -18.47670 -17.95731 -16.98280
-16.62963 -16.38874 -15.74358 -15.40384 -15.06563 -14.96605 -14.83383 -14.68759
-14.54611 -13.96436 -13.87394 -13.57678 -13.55402 -13.13959 -13.12962 -12.92568
-12.79648 -12.61749 -12.36384 -11.75520 -11.46825 -11.40217 -11.26951 -11.01568
-10.91872 -10.79215 -10.68607 -10.38864 -10.27340 -10.14877 -9.97201 -9.93930
-9.85554 -9.64518 -9.29530 -8.99673 -8.83334 -6.87029 -5.72748 -3.00870
-0.48404 0.02666 1.24324 1.99282 2.72165 2.87782 3.42826 3.45793
3.51199 3.53694 3.57492 3.82748 3.94380 4.09344 4.16648 4.27696
4.52282 4.61059 4.66997 4.74196 4.88573 4.97801 5.00018 5.11199
5.20384 5.26520 5.30474 5.41110 5.45625 5.57059 5.58190 5.62943
5.71056 5.76190 5.79671 5.89740 5.96361 6.00333 6.11916 6.21007
6.34194 6.36735 6.42035 6.50400 6.91128 6.93665 6.97515 7.28001
7.41579 7.74247 7.86725 8.46781 9.57520 10.17038 10.51699 11.50506
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.008937 B = 0.002218 C = 0.001881
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3132.246249 B =12622.446881 C =14879.535792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.138 3.862
3 H 0.091 0.909
4 C -0.127 4.127
5 C -0.115 4.115
6 C -0.125 4.125
7 C 0.152 3.848
8 N -0.735 5.735
9 C -0.237 4.237
10 H 0.070 0.930
11 C -0.017 4.017
12 N -0.935 5.935
13 Si 0.907 3.093
14 H -0.280 1.280
15 H -0.291 1.291
16 H -0.292 1.292
17 N -0.698 5.698
18 C 0.570 3.430
19 O -0.530 6.530
20 C 0.118 3.882
21 C -0.107 4.107
22 C -0.066 4.066
23 C -0.063 4.063
24 C -0.150 4.150
25 C 0.085 3.915
26 N -0.475 5.475
27 C 0.180 3.820
28 C 0.065 3.935
29 N -0.422 5.422
30 H 0.068 0.932
31 H 0.058 0.942
32 H 0.058 0.942
33 H 0.081 0.919
34 H 0.070 0.930
35 H 0.061 0.939
36 H 0.061 0.939
37 H 0.061 0.939
38 H 0.061 0.939
39 H 0.016 0.984
40 H 0.016 0.984
41 H 0.383 0.617
42 H 0.254 0.746
43 H 0.412 0.588
44 H 0.156 0.844
45 H 0.152 0.848
46 H 0.144 0.856
47 H 0.161 0.839
48 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.961 3.845 28.257 32.204
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.034 3.966
3 H 0.110 0.890
4 C -0.165 4.165
5 C -0.153 4.153
6 C -0.163 4.163
7 C 0.025 3.975
8 N -0.379 5.379
9 C -0.368 4.368
10 H 0.088 0.912
11 C -0.213 4.213
12 N -0.584 5.584
13 Si 0.738 3.262
14 H -0.206 1.206
15 H -0.219 1.219
16 H -0.219 1.219
17 N -0.349 5.349
18 C 0.354 3.646
19 O -0.406 6.406
20 C -0.037 4.037
21 C -0.128 4.128
22 C -0.092 4.092
23 C -0.070 4.070
24 C -0.170 4.170
25 C -0.057 4.057
26 N -0.183 5.183
27 C 0.006 3.994
28 C -0.061 4.061
29 N -0.135 5.135
30 H 0.087 0.913
31 H 0.077 0.923
32 H 0.077 0.923
33 H 0.100 0.900
34 H 0.089 0.911
35 H 0.080 0.920
36 H 0.080 0.920
37 H 0.079 0.921
38 H 0.079 0.921
39 H 0.034 0.966
40 H 0.034 0.966
41 H 0.217 0.783
42 H 0.064 0.936
43 H 0.249 0.751
44 H 0.174 0.826
45 H 0.169 0.831
46 H 0.162 0.838
47 H 0.178 0.822
48 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges -14.800 3.311 27.616 31.506
hybrid contribution 0.886 0.656 0.429 1.183
sum -13.914 3.967 28.045 31.557
Atomic orbital electron populations
1.22179 0.95084 1.02289 1.02591 1.21167 0.93954 0.97796 0.83640
0.89048 1.21946 0.96938 1.01088 0.96508 1.21533 0.93928 1.01084
0.98786 1.21719 0.97214 1.00323 0.97040 1.20649 0.91057 0.95276
0.90553 1.42400 1.05342 1.64875 1.25277 1.19300 0.83949 1.28158
1.05391 0.91211 1.24749 0.97719 1.01039 0.97748 1.69671 1.32657
1.40857 1.15197 0.86113 0.85119 0.77221 0.77749 1.20575 1.21864
1.21869 1.45987 1.65077 1.14896 1.08930 1.17822 0.78109 0.86048
0.82659 1.90794 1.50372 1.14869 1.84552 1.21510 0.97531 0.90020
0.94632 1.21904 0.96848 1.02450 0.91642 1.21442 0.95677 0.92585
0.99448 1.19095 0.97989 0.95142 0.94776 1.21924 1.00566 0.95654
0.98859 1.22396 0.95786 0.92447 0.95106 1.67551 1.12009 1.39438
0.99329 1.23326 0.90006 0.88624 0.97483 1.19893 1.00623 0.96337
0.89219 1.67738 1.07887 1.07852 1.29987 0.91268 0.92320 0.92259
0.90003 0.91145 0.92048 0.91991 0.92059 0.92054 0.96609 0.96625
0.78344 0.93609 0.75138 0.82634 0.83083 0.83821 0.82224 0.80485
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16
2 C 0.14 1.34 2.58 -67.92 -0.17 1.16 16
3 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16
4 C -0.13 -1.24 4.75 -26.73 -0.13 -1.37 16
5 C -0.12 -1.45 5.10 -26.73 -0.14 -1.58 16
6 C -0.13 -2.01 5.33 -26.73 -0.14 -2.16 16
7 C 0.15 3.19 6.26 -4.04 -0.03 3.17 16
8 N -0.74 -19.44 5.60 -59.91 -0.34 -19.77 16
9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16
10 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16
11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16
12 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16
13 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16
14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
15 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16
16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
17 N -0.70 -6.94 4.52 -54.60 -0.25 -7.19 16
18 C 0.57 6.43 7.78 -12.13 -0.09 6.33 16
19 O -0.53 -7.19 15.94 5.37 0.09 -7.10 16
20 C 0.12 1.19 6.75 -82.91 -0.56 0.63 16
21 C -0.11 -0.87 9.54 -39.38 -0.38 -1.24 16
22 C -0.07 -0.42 9.93 -39.32 -0.39 -0.81 16
23 C -0.06 -0.50 5.75 -106.71 -0.61 -1.11 16
24 C -0.15 -0.89 9.88 -39.43 -0.39 -1.28 16
25 C 0.08 0.58 11.07 -17.94 -0.20 0.38 16
26 N -0.47 -4.34 10.28 -13.05 -0.13 -4.48 16
27 C 0.18 1.60 11.26 -16.87 -0.19 1.41 16
28 C 0.07 0.62 6.62 -84.88 -0.56 0.05 16
29 N -0.42 -4.24 9.49 -7.51 -0.07 -4.32 16
30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
35 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16
36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
40 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16
41 H 0.38 10.54 7.67 -40.82 -0.31 10.22 16
42 H 0.25 7.55 8.31 -40.82 -0.34 7.22 16
43 H 0.41 3.77 7.90 -40.82 -0.32 3.44 16
44 H 0.16 1.11 7.60 -52.49 -0.40 0.71 16
45 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16
46 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16
47 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16
48 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16
LS Contribution 405.63 15.07 6.11 6.11
Total: -1.00 -35.04 405.63 -10.06 -45.10
By element:
Atomic # 1 Polarization: 14.34 SS G_CDS: -7.30 Total: 7.05 kcal
Atomic # 6 Polarization: -1.22 SS G_CDS: -3.87 Total: -5.10 kcal
Atomic # 7 Polarization: -63.90 SS G_CDS: -0.06 Total: -63.97 kcal
Atomic # 8 Polarization: -7.19 SS G_CDS: 0.09 Total: -7.10 kcal
Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -35.04 -10.06 -45.10 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171832148.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.718 kcal
(2) G-P(sol) polarization free energy of solvation -35.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.675 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds