Wall clock time and date at job start Sat Apr 11 2020 06:43:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08999 * 109.52294 * 2 1
4 4 C 1.53185 * 109.50083 * 120.08413 * 2 1 3
5 5 N 1.46923 * 108.78032 * 65.31564 * 4 2 1
6 6 C 1.34776 * 120.63270 * 233.63638 * 5 4 2
7 7 O 1.21523 * 119.99933 * 359.85003 * 6 5 4
8 8 C 1.48061 * 119.99932 * 179.85499 * 6 5 4
9 9 C 1.39765 * 119.47228 * 202.08555 * 8 6 5
10 10 C 1.38130 * 119.57515 * 179.74733 * 9 8 6
11 11 C 1.39251 * 118.38157 * 0.49418 * 10 9 8
12 12 N 1.37348 * 133.61916 * 179.74478 * 11 10 9
13 13 H 0.97003 * 125.04791 * 0.02562 * 12 11 10
14 14 C 1.36724 * 109.89862 * 180.02562 * 12 11 10
15 15 C 1.34287 * 110.01887 * 359.97438 * 14 12 11
16 16 C 1.41201 * 119.09649 * 359.76886 * 11 10 9
17 17 N 1.32447 * 119.47159 * 22.35666 * 8 6 5
18 18 C 1.46928 * 118.73659 * 53.60696 * 5 4 2
19 19 C 1.53201 * 108.77326 * 306.39473 * 18 5 4
20 20 C 1.53038 * 109.31084 * 54.63839 * 19 18 5
21 21 H 1.08999 * 109.46355 * 58.65317 * 20 19 18
22 22 C 1.53001 * 109.44457 * 178.62316 * 20 19 18
23 23 N 1.46502 * 109.46982 * 295.02543 * 22 20 19
24 24 C 1.36933 * 120.00372 * 180.02562 * 23 22 20
25 25 H 1.08007 * 119.99833 * 0.02562 * 24 23 22
26 26 C 1.38816 * 120.00510 * 180.02562 * 24 23 22
27 27 N 1.31617 * 120.00069 * 180.02562 * 26 24 23
28 28 Si 1.86800 * 119.99465 * 0.02562 * 26 24 23
29 29 H 1.48502 * 109.47212 * 90.00073 * 28 26 24
30 30 H 1.48501 * 109.46791 * 210.00005 * 28 26 24
31 31 H 1.48501 * 109.47331 * 329.99457 * 28 26 24
32 32 H 1.09005 * 109.46660 * 180.08209 * 1 2 3
33 33 H 1.09007 * 109.46936 * 300.07810 * 1 2 3
34 34 H 1.08991 * 109.47546 * 60.07918 * 1 2 3
35 35 H 1.08999 * 109.58894 * 185.10464 * 4 2 1
36 36 H 1.09005 * 109.58842 * 305.38391 * 4 2 1
37 37 H 1.08002 * 120.21127 * 359.97438 * 9 8 6
38 38 H 1.08004 * 120.81373 * 180.28854 * 10 9 8
39 39 H 1.07995 * 124.98749 * 180.02562 * 14 12 11
40 40 H 1.08004 * 126.47437 * 180.02562 * 15 14 12
41 41 H 1.08999 * 109.58632 * 66.18038 * 18 5 4
42 42 H 1.09001 * 109.58984 * 186.61143 * 18 5 4
43 43 H 1.08998 * 109.49707 * 294.67811 * 19 18 5
44 44 H 1.08999 * 109.49328 * 174.58247 * 19 18 5
45 45 H 1.08994 * 109.47682 * 55.02686 * 22 20 19
46 46 H 1.09003 * 109.46612 * 175.03393 * 22 20 19
47 47 H 0.97006 * 120.00078 * 0.02562 * 23 22 20
48 48 H 0.97006 * 119.99754 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8943 1.0273 0.0000
4 6 2.0414 -0.7238 1.2495
5 7 1.6517 -2.1382 1.1695
6 6 0.9742 -2.7219 2.1778
7 8 0.6822 -2.0782 3.1664
8 6 0.5857 -4.1473 2.0811
9 6 -0.4739 -4.6254 2.8571
10 6 -0.8415 -5.9537 2.7646
11 6 -0.1281 -6.7793 1.8995
12 7 -0.2158 -8.1103 1.5722
13 1 -0.8620 -8.7331 1.9404
14 6 0.7429 -8.4271 0.6504
15 6 1.4709 -7.3389 0.3518
16 6 0.9353 -6.2320 1.1489
17 7 1.2513 -4.9502 1.2646
18 6 2.0141 -2.9040 -0.0309
19 6 1.5030 -2.1556 -1.2661
20 6 2.0408 -0.7230 -1.2484
21 1 3.1305 -0.7443 -1.2354
22 6 1.5602 0.0170 -2.4984
23 7 2.1468 -0.6035 -3.6889
24 6 1.8585 -0.1073 -4.9322
25 1 1.1989 0.7418 -5.0351
26 6 2.4138 -0.6955 -6.0603
27 7 2.1370 -0.2182 -7.2552
28 14 3.5540 -2.1644 -5.8822
29 1 2.7578 -3.4171 -5.9255
30 1 4.5382 -2.1646 -6.9943
31 1 4.2726 -2.0790 -4.5854
32 1 -0.3633 -1.0277 0.0015
33 1 -0.3633 0.5151 0.8893
34 1 -0.3634 0.5125 -0.8906
35 1 3.1276 -0.6463 1.2979
36 1 1.6028 -0.2715 2.1390
37 1 -1.0042 -3.9598 3.5220
38 1 -1.6602 -6.3433 3.3515
39 1 0.8922 -9.4081 0.2243
40 1 2.2954 -7.2891 -0.3441
41 1 3.0980 -3.0042 -0.0870
42 1 1.5555 -3.8918 0.0135
43 1 0.4133 -2.1355 -1.2541
44 1 1.8481 -2.6626 -2.1672
45 1 0.4733 -0.0383 -2.5580
46 1 1.8686 1.0610 -2.4435
47 1 2.7395 -1.3658 -3.5965
48 1 2.5254 -0.6290 -8.0435
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001184800100.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:08
Heat of formation + Delta-G solvation = 65.654648 kcal
Electronic energy + Delta-G solvation = -30154.678281 eV
Core-core repulsion = 26211.020120 eV
Total energy + Delta-G solvation = -3943.658162 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.00373 -40.42006 -38.48849 -37.52105 -35.05904 -33.63491 -32.97213 -31.75445
-30.57481 -30.49414 -29.84524 -27.19071 -26.90253 -24.75647 -23.43518 -23.11283
-22.73189 -21.47911 -21.10583 -20.17705 -18.79767 -18.47570 -17.63970 -17.19544
-17.09558 -16.00366 -15.71866 -15.20388 -15.11791 -14.84207 -14.52103 -14.28271
-14.05997 -13.88505 -13.66683 -13.54310 -13.42496 -13.23238 -13.14443 -12.82185
-12.60713 -12.56466 -12.21409 -12.08771 -11.53543 -11.32706 -11.27043 -10.95529
-10.74872 -10.74230 -10.43707 -10.26558 -10.20205 -10.04490 -10.02264 -9.52644
-9.09063 -8.85683 -8.82058 -8.51675 -8.44779 -7.15318 -5.71791 -3.06109
0.48023 0.70410 2.20527 2.52647 2.66822 2.95624 3.40823 3.43664
3.48271 3.57896 3.77544 4.22641 4.36220 4.53616 4.63755 4.63973
4.82571 4.93472 4.97676 5.05605 5.14849 5.27806 5.31193 5.41283
5.50221 5.58044 5.60167 5.68065 5.72596 5.75546 5.83321 5.87844
5.93688 5.95026 6.02588 6.09351 6.21652 6.24735 6.34343 6.40671
6.42789 6.51875 6.59705 6.72092 6.82757 6.90946 6.94496 7.38435
7.53406 8.05829 8.13076 8.47724 9.27670 10.00241 10.20949 11.46998
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.010670 B = 0.003362 C = 0.002700
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2623.543705 B = 8326.309122 C =10369.462263
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.097 4.097
3 H 0.083 0.917
4 C 0.114 3.886
5 N -0.581 5.581
6 C 0.574 3.426
7 O -0.544 6.544
8 C 0.076 3.924
9 C -0.098 4.098
10 C -0.091 4.091
11 C 0.065 3.935
12 N -0.589 5.589
13 H 0.420 0.580
14 C 0.067 3.933
15 C -0.181 4.181
16 C 0.084 3.916
17 N -0.406 5.406
18 C 0.076 3.924
19 C -0.129 4.129
20 C -0.094 4.094
21 H 0.070 0.930
22 C 0.163 3.837
23 N -0.755 5.755
24 C -0.240 4.240
25 H 0.089 0.911
26 C 0.002 3.998
27 N -0.937 5.937
28 Si 0.883 3.117
29 H -0.284 1.284
30 H -0.292 1.292
31 H -0.276 1.276
32 H 0.054 0.946
33 H 0.049 0.951
34 H 0.063 0.937
35 H 0.068 0.932
36 H 0.091 0.909
37 H 0.151 0.849
38 H 0.139 0.861
39 H 0.181 0.819
40 H 0.159 0.841
41 H 0.065 0.935
42 H 0.138 0.862
43 H 0.067 0.933
44 H 0.077 0.923
45 H 0.029 0.971
46 H 0.025 0.975
47 H 0.360 0.640
48 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.991 -17.236 23.209 29.337
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.116 4.116
3 H 0.101 0.899
4 C -0.008 4.008
5 N -0.312 5.312
6 C 0.361 3.639
7 O -0.422 6.422
8 C -0.071 4.071
9 C -0.120 4.120
10 C -0.120 4.120
11 C -0.046 4.046
12 N -0.193 5.193
13 H 0.257 0.743
14 C -0.060 4.060
15 C -0.206 4.206
16 C -0.051 4.051
17 N -0.118 5.118
18 C -0.046 4.046
19 C -0.167 4.167
20 C -0.113 4.113
21 H 0.088 0.912
22 C 0.036 3.964
23 N -0.401 5.401
24 C -0.370 4.370
25 H 0.107 0.893
26 C -0.193 4.193
27 N -0.585 5.585
28 Si 0.714 3.286
29 H -0.211 1.211
30 H -0.218 1.218
31 H -0.203 1.203
32 H 0.073 0.927
33 H 0.068 0.932
34 H 0.082 0.918
35 H 0.086 0.914
36 H 0.110 0.890
37 H 0.169 0.831
38 H 0.157 0.843
39 H 0.198 0.802
40 H 0.177 0.823
41 H 0.084 0.916
42 H 0.154 0.846
43 H 0.086 0.914
44 H 0.096 0.904
45 H 0.047 0.953
46 H 0.043 0.957
47 H 0.193 0.807
48 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -4.584 -16.522 23.059 28.735
hybrid contribution -0.049 -1.692 0.360 1.731
sum -4.633 -18.214 23.419 30.028
Atomic orbital electron populations
1.21868 0.94849 1.01962 1.01583 1.21445 0.96717 0.99428 0.94021
0.89878 1.21744 0.99535 0.80224 0.99284 1.47929 1.53745 1.11403
1.18136 1.17787 0.77933 0.85142 0.83021 1.90756 1.56192 1.64032
1.31225 1.20949 0.95925 0.94102 0.96081 1.21678 0.96638 0.94986
0.98691 1.20432 1.00338 0.92485 0.98707 1.19250 0.99565 0.85611
1.00155 1.41637 1.31403 1.07856 1.38400 0.74286 1.22000 0.90515
1.00251 0.93240 1.21664 1.04527 0.89350 1.05106 1.20218 0.95448
0.90640 0.98827 1.67018 1.27081 1.02700 1.14980 1.22928 1.01000
0.98076 0.82622 1.22024 1.01402 0.95728 0.97595 1.21385 1.00196
0.95065 0.94672 0.91163 1.20699 0.96225 0.94791 0.84716 1.42745
1.57278 1.37480 1.02611 1.19080 1.23866 1.12088 0.81954 0.89333
1.24668 1.00366 0.99201 0.95114 1.69708 1.48537 1.43252 0.97022
0.86553 0.81283 0.83864 0.76936 1.21074 1.21808 1.20263 0.92674
0.93203 0.91848 0.91392 0.89049 0.83121 0.84297 0.80166 0.82292
0.91648 0.84556 0.91440 0.90443 0.95315 0.95748 0.80700 0.93157
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.97 8.38 37.16 0.31 -1.66 16
2 C -0.10 -1.29 2.72 -90.50 -0.25 -1.54 16
3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
4 C 0.11 1.48 5.82 -3.72 -0.02 1.46 16
5 N -0.58 -8.03 2.41 -173.80 -0.42 -8.45 16
6 C 0.57 8.35 7.61 -12.23 -0.09 8.26 16
7 O -0.54 -8.92 15.93 5.35 0.09 -8.84 16
8 C 0.08 0.98 6.45 -83.00 -0.53 0.45 16
9 C -0.10 -1.02 9.59 -39.05 -0.37 -1.40 16
10 C -0.09 -0.74 10.18 -39.24 -0.40 -1.14 16
11 C 0.07 0.58 7.29 -83.89 -0.61 -0.04 16
12 N -0.59 -3.25 6.05 -10.58 -0.06 -3.32 16
13 H 0.42 0.90 8.96 -40.82 -0.37 0.54 16
14 C 0.07 0.37 11.81 -16.76 -0.20 0.17 16
15 C -0.18 -1.54 11.08 -37.63 -0.42 -1.96 16
16 C 0.08 0.93 7.52 -83.10 -0.62 0.31 16
17 N -0.41 -5.21 6.41 -6.43 -0.04 -5.25 16
18 C 0.08 1.04 5.98 -3.70 -0.02 1.02 16
19 C -0.13 -1.98 4.90 -26.61 -0.13 -2.11 16
20 C -0.09 -1.48 1.96 -90.58 -0.18 -1.66 16
21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
22 C 0.16 3.20 5.18 -4.04 -0.02 3.18 16
23 N -0.76 -18.23 5.12 -59.91 -0.31 -18.53 16
24 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16
25 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16
26 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16
27 N -0.94 -29.87 13.97 55.49 0.78 -29.10 16
28 Si 0.88 22.33 27.74 -169.99 -4.71 17.61 16
29 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16
30 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
31 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16
32 H 0.05 0.79 5.97 -51.93 -0.31 0.48 16
33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
34 H 0.06 0.89 6.58 -51.93 -0.34 0.55 16
35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
36 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16
37 H 0.15 1.41 7.78 -52.49 -0.41 1.00 16
38 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16
39 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16
40 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16
41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
42 H 0.14 1.90 4.00 -78.56 -0.31 1.58 16
43 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16
44 H 0.08 1.30 7.15 -51.93 -0.37 0.93 16
45 H 0.03 0.58 6.74 -51.93 -0.35 0.23 16
46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
47 H 0.36 8.45 4.71 -40.82 -0.19 8.26 16
48 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16
LS Contribution 375.43 15.07 5.66 5.66
Total: -1.00 -36.07 375.43 -9.58 -45.66
By element:
Atomic # 1 Polarization: 15.07 SS G_CDS: -6.74 Total: 8.33 kcal
Atomic # 6 Polarization: 0.04 SS G_CDS: -3.81 Total: -3.77 kcal
Atomic # 7 Polarization: -64.59 SS G_CDS: -0.06 Total: -64.64 kcal
Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal
Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.61 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -36.07 -9.58 -45.66 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001184800100.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.314 kcal
(2) G-P(sol) polarization free energy of solvation -36.074 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.659 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.655 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds