Wall clock time and date at job start Sat Apr 11 2020 06:43:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08999 * 109.52294 * 2 1
4 4 C 1.53185 * 109.50083 * 120.08413 * 2 1 3
5 5 N 1.46923 * 108.78032 * 65.31564 * 4 2 1
6 6 C 1.34776 * 120.63270 * 233.63638 * 5 4 2
7 7 O 1.21523 * 119.99933 * 359.85003 * 6 5 4
8 8 C 1.48061 * 119.99932 * 179.85499 * 6 5 4
9 9 C 1.39765 * 119.47228 * 202.08555 * 8 6 5
10 10 C 1.38130 * 119.57515 * 179.74733 * 9 8 6
11 11 C 1.39251 * 118.38157 * 0.49418 * 10 9 8
12 12 N 1.37348 * 133.61916 * 179.74478 * 11 10 9
13 13 H 0.97003 * 125.04791 * 0.02562 * 12 11 10
14 14 C 1.36724 * 109.89862 * 180.02562 * 12 11 10
15 15 C 1.34287 * 110.01887 * 359.97438 * 14 12 11
16 16 C 1.41201 * 119.09649 * 359.76886 * 11 10 9
17 17 N 1.32447 * 119.47159 * 22.35666 * 8 6 5
18 18 C 1.46928 * 118.73659 * 53.60696 * 5 4 2
19 19 C 1.53201 * 108.77326 * 306.39473 * 18 5 4
20 20 C 1.53038 * 109.31084 * 54.63839 * 19 18 5
21 21 H 1.08999 * 109.46355 * 58.65317 * 20 19 18
22 22 C 1.53001 * 109.44457 * 178.62316 * 20 19 18
23 23 N 1.46502 * 109.46982 * 295.02543 * 22 20 19
24 24 C 1.36933 * 120.00372 * 180.02562 * 23 22 20
25 25 H 1.08007 * 119.99833 * 0.02562 * 24 23 22
26 26 C 1.38816 * 120.00510 * 180.02562 * 24 23 22
27 27 N 1.31617 * 120.00069 * 180.02562 * 26 24 23
28 28 Si 1.86800 * 119.99465 * 0.02562 * 26 24 23
29 29 H 1.48502 * 109.47212 * 90.00073 * 28 26 24
30 30 H 1.48501 * 109.46791 * 210.00005 * 28 26 24
31 31 H 1.48501 * 109.47331 * 329.99457 * 28 26 24
32 32 H 1.09005 * 109.46660 * 180.08209 * 1 2 3
33 33 H 1.09007 * 109.46936 * 300.07810 * 1 2 3
34 34 H 1.08991 * 109.47546 * 60.07918 * 1 2 3
35 35 H 1.08999 * 109.58894 * 185.10464 * 4 2 1
36 36 H 1.09005 * 109.58842 * 305.38391 * 4 2 1
37 37 H 1.08002 * 120.21127 * 359.97438 * 9 8 6
38 38 H 1.08004 * 120.81373 * 180.28854 * 10 9 8
39 39 H 1.07995 * 124.98749 * 180.02562 * 14 12 11
40 40 H 1.08004 * 126.47437 * 180.02562 * 15 14 12
41 41 H 1.08999 * 109.58632 * 66.18038 * 18 5 4
42 42 H 1.09001 * 109.58984 * 186.61143 * 18 5 4
43 43 H 1.08998 * 109.49707 * 294.67811 * 19 18 5
44 44 H 1.08999 * 109.49328 * 174.58247 * 19 18 5
45 45 H 1.08994 * 109.47682 * 55.02686 * 22 20 19
46 46 H 1.09003 * 109.46612 * 175.03393 * 22 20 19
47 47 H 0.97006 * 120.00078 * 0.02562 * 23 22 20
48 48 H 0.97006 * 119.99754 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8943 1.0273 0.0000
4 6 2.0414 -0.7238 1.2495
5 7 1.6517 -2.1382 1.1695
6 6 0.9742 -2.7219 2.1778
7 8 0.6822 -2.0782 3.1664
8 6 0.5857 -4.1473 2.0811
9 6 -0.4739 -4.6254 2.8571
10 6 -0.8415 -5.9537 2.7646
11 6 -0.1281 -6.7793 1.8995
12 7 -0.2158 -8.1103 1.5722
13 1 -0.8620 -8.7331 1.9404
14 6 0.7429 -8.4271 0.6504
15 6 1.4709 -7.3389 0.3518
16 6 0.9353 -6.2320 1.1489
17 7 1.2513 -4.9502 1.2646
18 6 2.0141 -2.9040 -0.0309
19 6 1.5030 -2.1556 -1.2661
20 6 2.0408 -0.7230 -1.2484
21 1 3.1305 -0.7443 -1.2354
22 6 1.5602 0.0170 -2.4984
23 7 2.1468 -0.6035 -3.6889
24 6 1.8585 -0.1073 -4.9322
25 1 1.1989 0.7418 -5.0351
26 6 2.4138 -0.6955 -6.0603
27 7 2.1370 -0.2182 -7.2552
28 14 3.5540 -2.1644 -5.8822
29 1 2.7578 -3.4171 -5.9255
30 1 4.5382 -2.1646 -6.9943
31 1 4.2726 -2.0790 -4.5854
32 1 -0.3633 -1.0277 0.0015
33 1 -0.3633 0.5151 0.8893
34 1 -0.3634 0.5125 -0.8906
35 1 3.1276 -0.6463 1.2979
36 1 1.6028 -0.2715 2.1390
37 1 -1.0042 -3.9598 3.5220
38 1 -1.6602 -6.3433 3.3515
39 1 0.8922 -9.4081 0.2243
40 1 2.2954 -7.2891 -0.3441
41 1 3.0980 -3.0042 -0.0870
42 1 1.5555 -3.8918 0.0135
43 1 0.4133 -2.1355 -1.2541
44 1 1.8481 -2.6626 -2.1672
45 1 0.4733 -0.0383 -2.5580
46 1 1.8686 1.0610 -2.4435
47 1 2.7395 -1.3658 -3.5965
48 1 2.5254 -0.6290 -8.0435
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001184800100.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:07
Heat of formation + Delta-G solvation = 41.938849 kcal
Electronic energy + Delta-G solvation = -30155.706676 eV
Core-core repulsion = 26211.020120 eV
Total energy + Delta-G solvation = -3944.686556 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.66422 -41.45068 -39.54575 -38.43718 -36.70866 -34.93523 -33.90364 -33.35802
-32.22079 -31.21679 -30.48085 -28.74295 -27.96508 -25.81447 -24.85711 -24.15864
-23.81246 -22.79928 -21.96781 -21.16601 -20.01552 -19.49566 -19.11974 -18.29770
-17.83889 -17.05301 -16.74120 -16.65865 -16.06572 -15.98544 -15.71915 -15.51821
-15.32194 -15.07288 -14.86429 -14.70395 -14.54961 -14.21150 -14.02470 -13.85651
-13.77856 -13.68150 -13.41385 -13.35301 -13.20182 -12.83118 -12.68116 -12.35373
-12.18682 -12.03204 -11.84517 -11.60152 -11.51093 -11.32647 -11.30791 -11.28499
-10.94124 -9.99167 -9.71905 -9.42109 -9.26788 -9.08786 -8.01741 -5.34744
-0.27249 0.00764 1.38579 1.42345 1.49762 1.63463 1.72621 1.91969
2.07945 2.49759 2.79696 2.97870 3.29621 3.50333 3.56504 3.65030
3.80222 3.83749 3.96920 4.01211 4.05714 4.14323 4.29510 4.35699
4.46865 4.52785 4.56570 4.64827 4.65503 4.73433 4.77520 4.84063
4.93419 4.97439 4.98692 5.01569 5.14920 5.18889 5.19026 5.23554
5.28257 5.41497 5.43152 5.53193 5.67223 5.76618 5.89161 6.22477
6.33386 6.56122 6.70180 7.08676 7.09279 7.85745 8.06057 9.20149
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.010670 B = 0.003362 C = 0.002700
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2623.543705 B = 8326.309122 C =10369.462263
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.089 4.089
3 H 0.097 0.903
4 C 0.116 3.884
5 N -0.583 5.583
6 C 0.571 3.429
7 O -0.571 6.571
8 C 0.049 3.951
9 C -0.113 4.113
10 C -0.077 4.077
11 C 0.059 3.941
12 N -0.572 5.572
13 H 0.439 0.561
14 C 0.101 3.899
15 C -0.222 4.222
16 C 0.053 3.947
17 N -0.429 5.429
18 C 0.085 3.915
19 C -0.123 4.123
20 C -0.083 4.083
21 H 0.075 0.925
22 C 0.162 3.838
23 N -0.756 5.756
24 C -0.235 4.235
25 H 0.053 0.947
26 C -0.065 4.065
27 N -0.986 5.986
28 Si 0.955 3.045
29 H -0.275 1.275
30 H -0.295 1.295
31 H -0.251 1.251
32 H 0.044 0.956
33 H 0.060 0.940
34 H 0.054 0.946
35 H 0.082 0.918
36 H 0.090 0.910
37 H 0.155 0.845
38 H 0.177 0.823
39 H 0.227 0.773
40 H 0.161 0.839
41 H 0.070 0.930
42 H 0.141 0.859
43 H 0.058 0.942
44 H 0.064 0.936
45 H 0.022 0.978
46 H 0.022 0.978
47 H 0.366 0.634
48 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.773 -20.579 25.088 32.797
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.109 4.109
3 H 0.115 0.885
4 C -0.006 4.006
5 N -0.313 5.313
6 C 0.359 3.641
7 O -0.451 6.451
8 C -0.097 4.097
9 C -0.135 4.135
10 C -0.105 4.105
11 C -0.053 4.053
12 N -0.177 5.177
13 H 0.281 0.719
14 C -0.028 4.028
15 C -0.246 4.246
16 C -0.082 4.082
17 N -0.141 5.141
18 C -0.037 4.037
19 C -0.162 4.162
20 C -0.102 4.102
21 H 0.093 0.907
22 C 0.036 3.964
23 N -0.402 5.402
24 C -0.366 4.366
25 H 0.071 0.929
26 C -0.256 4.256
27 N -0.637 5.637
28 Si 0.782 3.218
29 H -0.201 1.201
30 H -0.221 1.221
31 H -0.175 1.175
32 H 0.063 0.937
33 H 0.079 0.921
34 H 0.073 0.927
35 H 0.100 0.900
36 H 0.109 0.891
37 H 0.172 0.828
38 H 0.194 0.806
39 H 0.243 0.757
40 H 0.178 0.822
41 H 0.088 0.912
42 H 0.157 0.843
43 H 0.077 0.923
44 H 0.083 0.917
45 H 0.040 0.960
46 H 0.040 0.960
47 H 0.200 0.800
48 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -4.386 -19.877 24.995 32.235
hybrid contribution -0.220 -0.715 -0.228 0.782
sum -4.606 -20.592 24.766 32.537
Atomic orbital electron populations
1.21809 0.95051 1.01275 1.01645 1.21402 0.96447 0.99967 0.93051
0.88478 1.21771 1.00328 0.79834 0.98690 1.47980 1.53621 1.11674
1.18010 1.18121 0.77354 0.85988 0.82617 1.90720 1.57282 1.64958
1.32107 1.20831 0.97556 0.93373 0.97917 1.21782 0.96515 0.96303
0.98902 1.20764 1.00435 0.91352 0.97962 1.19359 0.98994 0.87035
0.99874 1.41719 1.31447 1.06872 1.37681 0.71950 1.22678 0.88164
1.00992 0.90940 1.21910 1.06342 0.89740 1.06645 1.20768 0.96778
0.90645 1.00020 1.66818 1.27842 1.03811 1.15662 1.22851 1.01147
0.97998 0.81735 1.21940 1.00821 0.95512 0.97898 1.21280 1.00358
0.95005 0.93595 0.90693 1.20826 0.95667 0.94947 0.84936 1.42726
1.57511 1.37705 1.02228 1.19046 1.22591 1.10823 0.84096 0.92887
1.25528 1.02702 1.02837 0.94569 1.69895 1.50387 1.45340 0.98029
0.85406 0.78934 0.79677 0.77826 1.20101 1.22127 1.17524 0.93741
0.92109 0.92739 0.90016 0.89135 0.82764 0.80578 0.75650 0.82153
0.91163 0.84326 0.92326 0.91747 0.95954 0.95981 0.80025 0.93328
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.77 8.38 71.98 0.60 -3.17 16
2 C -0.09 -2.30 2.72 -10.72 -0.03 -2.33 16
3 H 0.10 2.27 8.14 -2.39 -0.02 2.26 16
4 C 0.12 2.88 5.82 86.36 0.50 3.39 16
5 N -0.58 -15.97 2.41 -822.07 -1.98 -17.95 16
6 C 0.57 16.80 7.61 86.85 0.66 17.47 16
7 O -0.57 -18.97 15.93 -3.79 -0.06 -19.03 16
8 C 0.05 1.27 6.45 42.03 0.27 1.54 16
9 C -0.11 -2.29 9.59 22.61 0.22 -2.08 16
10 C -0.08 -1.09 10.18 22.49 0.23 -0.86 16
11 C 0.06 0.91 7.29 39.25 0.29 1.20 16
12 N -0.57 -4.11 6.05 -187.39 -1.13 -5.24 16
13 H 0.44 -0.15 8.96 -92.71 -0.83 -0.98 16
14 C 0.10 0.70 11.81 83.03 0.98 1.68 16
15 C -0.22 -3.36 11.08 23.53 0.26 -3.10 16
16 C 0.05 1.14 7.52 41.93 0.32 1.45 16
17 N -0.43 -11.02 6.41 -174.25 -1.12 -12.14 16
18 C 0.08 2.30 5.98 86.37 0.52 2.82 16
19 C -0.12 -3.75 4.90 30.67 0.15 -3.60 16
20 C -0.08 -2.55 1.96 -10.77 -0.02 -2.58 16
21 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
22 C 0.16 6.38 5.18 86.38 0.45 6.83 16
23 N -0.76 -36.33 5.12 -343.44 -1.76 -38.09 16
24 C -0.23 -13.80 10.47 84.04 0.88 -12.92 16
25 H 0.05 3.43 8.06 -2.91 -0.02 3.40 16
26 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16
27 N -0.99 -64.40 13.97 21.65 0.30 -64.10 16
28 Si 0.95 46.00 27.74 68.60 1.90 47.91 16
29 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16
30 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16
31 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16
32 H 0.04 1.28 5.97 -2.38 -0.01 1.27 16
33 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16
34 H 0.05 1.54 6.58 -2.39 -0.02 1.52 16
35 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16
36 H 0.09 2.32 7.01 -2.38 -0.02 2.30 16
37 H 0.15 2.87 7.78 -2.91 -0.02 2.85 16
38 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16
39 H 0.23 -0.57 8.06 -2.91 -0.02 -0.60 16
40 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16
41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
42 H 0.14 3.89 4.00 -54.98 -0.22 3.67 16
43 H 0.06 1.87 6.34 -2.39 -0.02 1.86 16
44 H 0.06 2.12 7.15 -2.39 -0.02 2.10 16
45 H 0.02 0.92 6.74 -2.39 -0.02 0.91 16
46 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16
47 H 0.37 16.69 4.71 -92.70 -0.44 16.25 16
48 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16
Total: -1.00 -81.22 375.43 2.37 -78.85
By element:
Atomic # 1 Polarization: 28.03 SS G_CDS: -0.52 Total: 27.50 kcal
Atomic # 6 Polarization: -4.45 SS G_CDS: 6.74 Total: 2.29 kcal
Atomic # 7 Polarization: -131.83 SS G_CDS: -5.69 Total: -137.52 kcal
Atomic # 8 Polarization: -18.97 SS G_CDS: -0.06 Total: -19.03 kcal
Atomic # 14 Polarization: 46.00 SS G_CDS: 1.90 Total: 47.91 kcal
Total: -81.22 2.37 -78.85 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001184800100.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.790 kcal
(2) G-P(sol) polarization free energy of solvation -81.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.570 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.852 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.939 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds