Wall clock time and date at job start Sat Apr 11 2020 06:44:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09001 * 109.52585 * 2 1
4 4 C 1.53195 * 109.50039 * 239.91775 * 2 1 3
5 5 N 1.46927 * 108.77516 * 185.41639 * 4 2 1
6 6 C 1.34779 * 120.62970 * 233.58422 * 5 4 2
7 7 O 1.21565 * 119.99623 * 7.82897 * 6 5 4
8 8 C 1.47761 * 119.99951 * 187.82566 * 6 5 4
9 9 N 1.32739 * 120.05831 * 7.22660 * 8 6 5
10 10 C 1.31721 * 122.13263 * 179.97438 * 9 8 6
11 11 C 1.38300 * 121.68688 * 0.02562 * 10 9 8
12 12 C 1.39022 * 119.09787 * 359.97438 * 11 10 9
13 13 N 1.37194 * 134.65696 * 179.97438 * 12 11 10
14 14 H 0.96998 * 125.05660 * 0.02562 * 13 12 11
15 15 C 1.36720 * 109.87843 * 180.02562 * 13 12 11
16 16 C 1.34564 * 109.95455 * 359.97438 * 15 13 12
17 17 C 1.40404 * 120.05382 * 187.51975 * 8 6 5
18 18 C 1.46925 * 118.73776 * 53.85887 * 5 4 2
19 19 C 1.53630 * 108.54317 * 306.09119 * 18 5 4
20 20 C 1.53036 * 109.23739 * 54.86168 * 19 18 5
21 21 H 1.08997 * 109.46360 * 58.53118 * 20 19 18
22 22 C 1.53002 * 109.44569 * 178.49568 * 20 19 18
23 23 N 1.46494 * 109.47120 * 295.05935 * 22 20 19
24 24 C 1.36937 * 120.00207 * 179.97438 * 23 22 20
25 25 H 1.08003 * 120.00250 * 0.02562 * 24 23 22
26 26 C 1.38816 * 120.00165 * 179.97438 * 24 23 22
27 27 N 1.31621 * 120.00161 * 0.02562 * 26 24 23
28 28 Si 1.86808 * 119.99918 * 180.02562 * 26 24 23
29 29 H 1.48493 * 109.47068 * 60.00227 * 28 26 24
30 30 H 1.48499 * 109.46740 * 180.02562 * 28 26 24
31 31 H 1.48502 * 109.47052 * 300.00102 * 28 26 24
32 32 H 1.08997 * 109.47559 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.47601 * 300.08619 * 1 2 3
34 34 H 1.09004 * 109.47071 * 60.08440 * 1 2 3
35 35 H 1.08993 * 109.58440 * 65.62739 * 4 2 1
36 36 H 1.09000 * 109.58363 * 305.20363 * 4 2 1
37 37 H 1.07996 * 119.15486 * 179.97438 * 10 9 8
38 38 H 1.08007 * 120.45167 * 180.02562 * 11 10 9
39 39 H 1.07991 * 125.02124 * 179.97438 * 15 13 12
40 40 H 1.08006 * 126.50100 * 180.02562 * 16 15 13
41 41 H 1.08997 * 109.59114 * 65.93051 * 18 5 4
42 42 H 1.09000 * 109.58296 * 186.35233 * 18 5 4
43 43 H 1.08997 * 109.63556 * 294.86541 * 19 18 5
44 44 H 1.09003 * 109.45544 * 174.74276 * 19 18 5
45 45 H 1.09004 * 109.47217 * 55.06042 * 22 20 19
46 46 H 1.08998 * 109.47246 * 175.05695 * 22 20 19
47 47 H 0.97001 * 120.00259 * 0.02562 * 23 22 20
48 48 H 0.96998 * 120.00152 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8943 1.0273 0.0000
4 6 2.0413 -0.7238 -1.2496
5 7 3.5046 -0.8292 -1.1695
6 6 4.2812 -0.3865 -2.1782
7 8 3.7860 0.2323 -3.0999
8 6 5.7345 -0.6533 -2.1636
9 7 6.2552 -1.4482 -1.2368
10 6 7.5443 -1.7143 -1.1859
11 6 8.4334 -1.1777 -2.0993
12 6 7.9531 -0.3365 -3.0964
13 7 8.5256 0.3520 -4.1358
14 1 9.4712 0.3496 -4.3519
15 6 7.5649 1.0419 -4.8217
16 6 6.3595 0.8289 -4.2628
17 6 6.5677 -0.0615 -3.1263
18 6 4.1050 -1.4318 0.0285
19 6 3.5707 -0.6949 1.2662
20 6 2.0407 -0.7231 1.2484
21 1 1.6966 -1.7572 1.2354
22 6 1.5038 -0.0229 2.4984
23 7 1.8931 -0.7827 3.6889
24 6 1.5228 -0.3446 4.9322
25 1 0.9432 0.5610 5.0353
26 6 1.8912 -1.0648 6.0603
27 7 2.5970 -2.1687 5.9348
28 14 1.3853 -0.4674 7.7564
29 1 -0.0961 -0.4060 7.8380
30 1 1.8998 -1.4061 8.7856
31 1 1.9506 0.8851 7.9938
32 1 -0.3634 -1.0276 0.0005
33 1 -0.3634 0.5152 0.8892
34 1 -0.3633 0.5125 -0.8908
35 1 1.7638 -0.1580 -2.1388
36 1 1.6052 -1.7216 -1.2980
37 1 7.9165 -2.3675 -0.4106
38 1 9.4866 -1.4097 -2.0392
39 1 7.7467 1.6655 -5.6844
40 1 5.4173 1.2429 -4.5905
41 1 3.8338 -2.4862 0.0822
42 1 5.1895 -1.3332 -0.0173
43 1 3.9158 0.3389 1.2542
44 1 3.9333 -1.1891 2.1676
45 1 1.9188 0.9833 2.5578
46 1 0.4168 0.0350 2.4438
47 1 2.4139 -1.5958 3.5965
48 1 2.8548 -2.6717 6.7230
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001185171469.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:31
Heat of formation + Delta-G solvation = 62.185306 kcal
Electronic energy + Delta-G solvation = -29827.418808 eV
Core-core repulsion = 25883.610204 eV
Total energy + Delta-G solvation = -3943.808604 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.95057 -40.09735 -38.32503 -37.71213 -34.84471 -33.50770 -32.47819 -31.75180
-30.95888 -30.17758 -29.54500 -26.77564 -26.69692 -24.65480 -23.42581 -22.90550
-22.19404 -21.57559 -21.05091 -20.20898 -19.33951 -18.28488 -17.49179 -16.96183
-16.30070 -15.85922 -15.56906 -15.50896 -14.91455 -14.81170 -14.60973 -14.31338
-14.03742 -13.74749 -13.45757 -13.40070 -13.23339 -13.18082 -12.90969 -12.73745
-12.44281 -12.24419 -12.02456 -11.75355 -11.59307 -11.43782 -10.90886 -10.77712
-10.67431 -10.39090 -10.26919 -10.23123 -10.09709 -10.01416 -9.89770 -9.52689
-9.23043 -8.85058 -8.72282 -8.42893 -8.15078 -6.81543 -5.69209 -2.96467
0.25018 1.16219 2.31862 2.60998 2.74816 3.05786 3.48639 3.52673
3.53850 3.77202 4.02703 4.26534 4.45499 4.65457 4.65883 4.76917
4.99140 5.04791 5.10406 5.13366 5.23023 5.27432 5.45810 5.60145
5.64214 5.65584 5.69240 5.71652 5.81492 5.89845 5.98375 6.07474
6.09913 6.15468 6.22145 6.27325 6.36235 6.42523 6.46297 6.50812
6.62582 6.67631 6.78738 6.89403 7.00697 7.01588 7.08949 7.48864
7.66468 7.76603 8.23610 8.50520 9.61249 10.21392 10.56230 11.53841
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.015527 B = 0.002578 C = 0.002306
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1802.891751 B =10856.847201 C =12138.500286
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.096 4.096
3 H 0.072 0.928
4 C 0.116 3.884
5 N -0.584 5.584
6 C 0.569 3.431
7 O -0.540 6.540
8 C 0.141 3.859
9 N -0.459 5.459
10 C 0.096 3.904
11 C -0.160 4.160
12 C 0.120 3.880
13 N -0.589 5.589
14 H 0.419 0.581
15 C 0.045 3.955
16 C -0.166 4.166
17 C -0.111 4.111
18 C 0.065 3.935
19 C -0.124 4.124
20 C -0.090 4.090
21 H 0.070 0.930
22 C 0.156 3.844
23 N -0.731 5.731
24 C -0.235 4.235
25 H 0.068 0.932
26 C -0.016 4.016
27 N -0.935 5.935
28 Si 0.905 3.095
29 H -0.287 1.287
30 H -0.292 1.292
31 H -0.287 1.287
32 H 0.055 0.945
33 H 0.067 0.933
34 H 0.050 0.950
35 H 0.088 0.912
36 H 0.067 0.933
37 H 0.168 0.832
38 H 0.136 0.864
39 H 0.178 0.822
40 H 0.162 0.838
41 H 0.063 0.937
42 H 0.151 0.849
43 H 0.057 0.943
44 H 0.085 0.915
45 H 0.015 0.985
46 H 0.023 0.977
47 H 0.383 0.617
48 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.050 2.870 -24.007 27.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.116 4.116
3 H 0.090 0.910
4 C -0.007 4.007
5 N -0.315 5.315
6 C 0.356 3.644
7 O -0.417 6.417
8 C -0.003 4.003
9 N -0.172 5.172
10 C -0.057 4.057
11 C -0.183 4.183
12 C 0.005 3.995
13 N -0.193 5.193
14 H 0.257 0.743
15 C -0.080 4.080
16 C -0.192 4.192
17 C -0.119 4.119
18 C -0.057 4.057
19 C -0.163 4.163
20 C -0.109 4.109
21 H 0.089 0.911
22 C 0.029 3.971
23 N -0.375 5.375
24 C -0.367 4.367
25 H 0.086 0.914
26 C -0.211 4.211
27 N -0.584 5.584
28 Si 0.737 3.263
29 H -0.214 1.214
30 H -0.217 1.217
31 H -0.214 1.214
32 H 0.074 0.926
33 H 0.086 0.914
34 H 0.069 0.931
35 H 0.107 0.893
36 H 0.086 0.914
37 H 0.185 0.815
38 H 0.154 0.846
39 H 0.195 0.805
40 H 0.180 0.820
41 H 0.081 0.919
42 H 0.167 0.833
43 H 0.076 0.924
44 H 0.104 0.896
45 H 0.033 0.967
46 H 0.040 0.960
47 H 0.217 0.783
48 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 12.297 2.919 -23.787 26.936
hybrid contribution 0.952 0.332 0.455 1.106
sum 13.249 3.251 -23.332 27.027
Atomic orbital electron populations
1.21829 0.94555 1.02095 1.01913 1.21439 0.95904 0.99907 0.94309
0.90999 1.21755 0.78891 1.00812 0.99213 1.48014 1.06592 1.58639
1.18212 1.17748 0.84795 0.79357 0.82517 1.90725 1.74048 1.40687
1.36250 1.20728 0.93883 0.94408 0.91256 1.67600 1.14174 1.14858
1.20529 1.22615 0.88032 0.97527 0.97495 1.21179 1.01580 0.99890
0.95643 1.18290 0.92602 0.96890 0.91693 1.41658 1.10178 1.41863
1.25621 0.74347 1.22101 0.87820 0.99087 0.98960 1.21940 0.98229
1.02538 0.96481 1.19797 0.92125 1.01458 0.98538 1.23339 1.03827
0.96224 0.82267 1.22028 0.95417 1.00864 0.97949 1.21360 0.95378
0.99931 0.94229 0.91132 1.20759 0.96501 0.94030 0.85810 1.42376
1.65341 1.29015 1.00809 1.19193 1.27463 1.06082 0.83937 0.91415
1.24713 1.01104 0.97599 0.97701 1.69646 1.42897 1.17298 1.28532
0.86288 0.78019 0.77601 0.84414 1.21370 1.21750 1.21388 0.92565
0.91398 0.93094 0.89336 0.91444 0.81481 0.84622 0.80538 0.82024
0.91872 0.83271 0.92385 0.89623 0.96721 0.95973 0.78265 0.93574
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.92 8.81 37.16 0.33 -1.60 16
2 C -0.10 -1.40 2.41 -90.50 -0.22 -1.61 16
3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
4 C 0.12 1.62 5.72 -3.71 -0.02 1.59 16
5 N -0.58 -8.69 2.97 -173.64 -0.52 -9.20 16
6 C 0.57 8.85 7.65 -12.37 -0.09 8.76 16
7 O -0.54 -9.19 14.62 5.31 0.08 -9.11 16
8 C 0.14 1.96 6.64 -82.77 -0.55 1.41 16
9 N -0.46 -5.74 6.07 -9.67 -0.06 -5.80 16
10 C 0.10 0.91 11.13 -17.58 -0.20 0.71 16
11 C -0.16 -1.30 10.14 -39.27 -0.40 -1.70 16
12 C 0.12 1.15 7.34 -84.03 -0.62 0.53 16
13 N -0.59 -3.82 6.04 -10.59 -0.06 -3.89 16
14 H 0.42 1.23 8.96 -40.82 -0.37 0.86 16
15 C 0.05 0.31 11.82 -16.67 -0.20 0.12 16
16 C -0.17 -1.77 10.26 -37.83 -0.39 -2.16 16
17 C -0.11 -1.38 6.15 -104.88 -0.65 -2.02 16
18 C 0.07 0.96 5.95 -3.48 -0.02 0.94 16
19 C -0.12 -2.08 5.26 -26.39 -0.14 -2.21 16
20 C -0.09 -1.53 1.73 -90.58 -0.16 -1.69 16
21 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
22 C 0.16 3.25 5.41 -4.04 -0.02 3.23 16
23 N -0.73 -18.82 5.32 -59.91 -0.32 -19.14 16
24 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16
25 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16
26 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16
27 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16
28 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16
29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
30 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
31 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16
32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
33 H 0.07 0.96 6.30 -51.93 -0.33 0.63 16
34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16
36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
37 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16
38 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16
39 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16
40 H 0.16 1.81 7.26 -52.48 -0.38 1.43 16
41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
42 H 0.15 2.14 3.93 -88.31 -0.35 1.79 16
43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
44 H 0.09 1.60 7.15 -51.93 -0.37 1.23 16
45 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16
46 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16
47 H 0.38 10.27 6.84 -40.82 -0.28 10.00 16
48 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16
LS Contribution 379.92 15.07 5.73 5.73
Total: -1.00 -34.90 379.92 -9.99 -44.88
By element:
Atomic # 1 Polarization: 16.62 SS G_CDS: -6.95 Total: 9.67 kcal
Atomic # 6 Polarization: 0.46 SS G_CDS: -3.58 Total: -3.12 kcal
Atomic # 7 Polarization: -65.57 SS G_CDS: -0.23 Total: -65.81 kcal
Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal
Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -34.90 -9.99 -44.88 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185171469.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.070 kcal
(2) G-P(sol) polarization free energy of solvation -34.899 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.170 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.884 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.185 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds