Wall clock time and date at job start Sat Apr 11 2020 06:43:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09002 * 110.30551 * 2 1
4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3
5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1
6 6 C 1.34776 * 127.83552 * 219.56414 * 5 4 2
7 7 O 1.21286 * 120.00097 * 180.02562 * 6 5 4
8 8 C 1.50705 * 120.00199 * 0.02623 * 6 5 4
9 9 C 1.50692 * 109.47372 * 179.97438 * 8 6 5
10 10 N 1.30250 * 126.11066 * 269.69457 * 9 8 6
11 11 N 1.39868 * 110.08468 * 179.90056 * 10 9 8
12 12 H 0.97000 * 125.46150 * 180.18360 * 11 10 9
13 13 C 1.37039 * 109.07972 * 0.37032 * 11 10 9
14 14 C 1.39286 * 133.84954 * 179.79285 * 13 11 10
15 15 C 1.36593 * 119.85056 * 180.02562 * 14 13 11
16 16 C 1.38971 * 120.81409 * 359.97438 * 15 14 13
17 17 C 1.36458 * 120.62849 * 0.02562 * 16 15 14
18 18 C 1.39951 * 119.63760 * 359.97438 * 17 16 15
19 19 C 1.48140 * 104.32775 * 39.58831 * 5 4 2
20 20 C 1.54281 * 110.34397 * 122.17674 * 2 1 3
21 21 H 1.09002 * 110.34142 * 237.84781 * 20 2 1
22 22 C 1.53003 * 110.34211 * 359.97438 * 20 2 1
23 23 N 1.46505 * 109.47422 * 185.00055 * 22 20 2
24 24 C 1.36931 * 120.00405 * 180.02562 * 23 22 20
25 25 H 1.07998 * 119.99680 * 359.97438 * 24 23 22
26 26 C 1.38811 * 120.00347 * 180.02562 * 24 23 22
27 27 N 1.31617 * 119.99780 * 359.97438 * 26 24 23
28 28 Si 1.86797 * 120.00291 * 179.97438 * 26 24 23
29 29 H 1.48500 * 109.46949 * 59.99586 * 28 26 24
30 30 H 1.48491 * 109.47148 * 179.97438 * 28 26 24
31 31 H 1.48506 * 109.47036 * 299.99906 * 28 26 24
32 32 H 1.08999 * 109.47069 * 299.29750 * 1 2 3
33 33 H 1.09004 * 109.47187 * 59.29880 * 1 2 3
34 34 H 1.09004 * 109.47207 * 179.30026 * 1 2 3
35 35 H 1.08990 * 110.40604 * 336.00312 * 4 2 1
36 36 H 1.09000 * 110.40401 * 98.43734 * 4 2 1
37 37 H 1.08993 * 109.47329 * 300.00568 * 8 6 5
38 38 H 1.09006 * 109.46605 * 59.99917 * 8 6 5
39 39 H 1.07992 * 120.07652 * 359.97041 * 14 13 11
40 40 H 1.07999 * 119.58972 * 180.02562 * 15 14 13
41 41 H 1.07999 * 119.68429 * 180.02562 * 16 15 14
42 42 H 1.08006 * 120.18302 * 179.97438 * 17 16 15
43 43 H 1.08998 * 110.41105 * 201.63246 * 19 5 4
44 44 H 1.09004 * 110.40870 * 79.19127 * 19 5 4
45 45 H 1.08994 * 109.47367 * 305.00343 * 22 20 2
46 46 H 1.09001 * 109.46773 * 65.00890 * 22 20 2
47 47 H 0.97005 * 119.99632 * 0.02562 * 23 22 20
48 48 H 0.97002 * 120.00175 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9082 1.0223 0.0000
4 6 2.0689 -0.7718 -1.2238
5 7 3.2692 -1.4794 -0.7205
6 6 4.4459 -1.6630 -1.3514
7 8 5.3405 -2.2702 -0.8018
8 6 4.6502 -1.1138 -2.7399
9 6 6.0397 -1.4526 -3.2147
10 7 7.1058 -0.7221 -3.0524
11 7 8.2142 -1.3567 -3.6223
12 1 9.1203 -1.0103 -3.6269
13 6 7.8144 -2.5443 -4.1769
14 6 8.4759 -3.5601 -4.8631
15 6 7.7788 -4.6494 -5.3026
16 6 6.4126 -4.7601 -5.0738
17 6 5.7381 -3.7807 -4.4045
18 6 6.4300 -2.6547 -3.9441
19 6 2.8824 -1.9401 0.6333
20 6 2.0663 -0.7703 1.2244
21 1 2.7080 -0.1264 1.8258
22 6 0.9061 -1.3010 2.0690
23 7 1.4328 -1.9243 3.2857
24 6 0.5745 -2.4739 4.2002
25 1 -0.4908 -2.4475 4.0247
26 6 1.0736 -3.0640 5.3533
27 7 2.3718 -3.0957 5.5674
28 14 -0.0974 -3.8131 6.6011
29 1 -0.8829 -4.8953 5.9553
30 1 0.6803 -4.3752 7.7344
31 1 -1.0205 -2.7647 7.1053
32 1 -0.3633 0.5029 0.8962
33 1 -0.3634 0.5247 -0.8837
34 1 -0.3634 -1.0276 -0.0126
35 1 1.3271 -1.4869 -1.5790
36 1 2.3421 -0.0790 -2.0198
37 1 3.9174 -1.5538 -3.4162
38 1 4.5259 -0.0310 -2.7242
39 1 9.5373 -3.4861 -5.0479
40 1 8.2960 -5.4347 -5.8339
41 1 5.8795 -5.6296 -5.4291
42 1 4.6762 -3.8740 -4.2310
43 1 3.7692 -2.1288 1.2384
44 1 2.2675 -2.8377 0.5681
45 1 0.2467 -0.4764 2.3394
46 1 0.3472 -2.0401 1.4950
47 1 2.3897 -1.9476 3.4435
48 1 2.7206 -3.5083 6.3730
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001325598408.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:35
Heat of formation + Delta-G solvation = 66.182217 kcal
Electronic energy + Delta-G solvation = -29019.923342 eV
Core-core repulsion = 25076.288057 eV
Total energy + Delta-G solvation = -3943.635285 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.53091 -40.02081 -38.06370 -37.34401 -34.62951 -33.58851 -32.89277 -31.16325
-30.74726 -30.00384 -29.29820 -28.23153 -26.39993 -25.07180 -23.36201 -23.20638
-22.41415 -22.05143 -20.71367 -19.05219 -18.81750 -18.06419 -17.34197 -17.13971
-16.77352 -15.92778 -15.59263 -15.41370 -15.23707 -14.83408 -14.57228 -14.46954
-14.16465 -13.82713 -13.62780 -13.57924 -13.26424 -13.01189 -12.43781 -12.35655
-12.17318 -12.15975 -12.07872 -11.88035 -11.85184 -11.69393 -11.33289 -10.95942
-10.93798 -10.82403 -10.49785 -10.45941 -10.39474 -10.18502 -9.92892 -9.75486
-9.64674 -8.89794 -8.83490 -8.62558 -8.21621 -6.89166 -5.72949 -3.02229
0.71323 1.28617 2.13876 2.44636 2.66926 3.06701 3.45951 3.50078
3.51706 3.57754 4.11965 4.29144 4.44061 4.45820 4.60508 4.64393
4.73616 4.85600 4.91470 5.01877 5.08739 5.12689 5.17146 5.30857
5.37824 5.43588 5.50645 5.58450 5.60763 5.63396 5.72091 5.80139
5.84965 5.96780 6.07151 6.11335 6.16664 6.18231 6.22238 6.28193
6.35224 6.44355 6.54691 6.61225 6.76773 6.87437 7.06960 7.37969
7.63052 7.71514 8.21024 8.45402 9.56274 10.14432 10.48275 11.49671
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.014690 B = 0.002232 C = 0.002084
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1905.615898 B =12542.103632 C =13434.349670
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.099 4.099
3 H 0.078 0.922
4 C 0.103 3.897
5 N -0.624 5.624
6 C 0.536 3.464
7 O -0.528 6.528
8 C -0.058 4.058
9 C 0.124 3.876
10 N -0.237 5.237
11 N -0.508 5.508
12 H 0.440 0.560
13 C 0.129 3.871
14 C -0.144 4.144
15 C -0.070 4.070
16 C -0.161 4.161
17 C -0.036 4.036
18 C -0.164 4.164
19 C 0.117 3.883
20 C -0.106 4.106
21 H 0.080 0.920
22 C 0.163 3.837
23 N -0.734 5.734
24 C -0.241 4.241
25 H 0.070 0.930
26 C -0.013 4.013
27 N -0.932 5.932
28 Si 0.907 3.093
29 H -0.286 1.286
30 H -0.291 1.291
31 H -0.286 1.286
32 H 0.067 0.933
33 H 0.050 0.950
34 H 0.064 0.936
35 H 0.076 0.924
36 H 0.076 0.924
37 H 0.116 0.884
38 H 0.114 0.886
39 H 0.125 0.875
40 H 0.128 0.872
41 H 0.127 0.873
42 H 0.126 0.874
43 H 0.083 0.917
44 H 0.077 0.923
45 H 0.027 0.973
46 H 0.023 0.977
47 H 0.383 0.617
48 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.069 4.059 -27.209 28.172
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.118 4.118
3 H 0.096 0.904
4 C -0.021 4.021
5 N -0.358 5.358
6 C 0.323 3.677
7 O -0.404 6.404
8 C -0.100 4.100
9 C -0.055 4.055
10 N -0.051 5.051
11 N -0.222 5.222
12 H 0.284 0.716
13 C 0.013 3.987
14 C -0.166 4.166
15 C -0.091 4.091
16 C -0.180 4.180
17 C -0.057 4.057
18 C -0.171 4.171
19 C -0.005 4.005
20 C -0.125 4.125
21 H 0.099 0.901
22 C 0.035 3.965
23 N -0.379 5.379
24 C -0.372 4.372
25 H 0.087 0.913
26 C -0.210 4.210
27 N -0.580 5.580
28 Si 0.738 3.262
29 H -0.213 1.213
30 H -0.217 1.217
31 H -0.213 1.213
32 H 0.086 0.914
33 H 0.069 0.931
34 H 0.083 0.917
35 H 0.094 0.906
36 H 0.094 0.906
37 H 0.134 0.866
38 H 0.132 0.868
39 H 0.143 0.857
40 H 0.146 0.854
41 H 0.145 0.855
42 H 0.144 0.856
43 H 0.102 0.898
44 H 0.096 0.904
45 H 0.044 0.956
46 H 0.041 0.959
47 H 0.217 0.783
48 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 7.026 4.760 -26.394 27.725
hybrid contribution 0.000 -0.946 0.589 1.115
sum 7.026 3.814 -25.805 27.015
Atomic orbital electron populations
1.21897 0.93897 1.02730 1.01807 1.22056 0.96534 0.99203 0.94050
0.90351 1.22570 0.86979 0.95556 0.96953 1.49016 1.12480 1.55919
1.18406 1.19787 0.80821 0.80243 0.86847 1.90779 1.41001 1.41308
1.67271 1.20009 0.91071 1.03970 0.94962 1.22626 0.94162 0.91810
0.96880 1.76509 0.93017 1.20642 1.14919 1.45826 1.09611 1.16102
1.50694 0.71568 1.18835 0.94098 0.88913 0.96807 1.19815 0.99866
0.93753 1.03175 1.20723 0.94332 0.96511 0.97520 1.20665 0.94637
0.99909 1.02802 1.20367 0.99732 0.91153 0.94424 1.19690 0.93103
0.97636 1.06713 1.22437 0.99592 0.96998 0.81431 1.22338 0.98132
0.96358 0.95701 0.90146 1.20848 0.92895 0.95079 0.87685 1.42422
1.06753 1.69029 1.19661 1.19150 0.89829 1.29630 0.98601 0.91251
1.24752 0.95818 1.01780 0.98608 1.69652 1.10582 1.49867 1.27935
0.86277 0.79797 0.79038 0.81114 1.21286 1.21727 1.21304 0.91439
0.93098 0.91689 0.90584 0.90553 0.86619 0.86817 0.85727 0.85362
0.85526 0.85578 0.89808 0.90438 0.95562 0.95944 0.78299 0.93435
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.50 7.93 37.16 0.29 -1.20 16
2 C -0.10 -1.11 3.65 -89.22 -0.33 -1.43 16
3 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16
4 C 0.10 1.00 6.46 -2.41 -0.02 0.98 16
5 N -0.62 -8.45 3.32 -169.31 -0.56 -9.01 16
6 C 0.54 7.86 7.91 -10.98 -0.09 7.77 16
7 O -0.53 -10.37 16.30 5.55 0.09 -10.28 16
8 C -0.06 -0.61 5.27 -29.04 -0.15 -0.76 16
9 C 0.12 1.60 5.93 -80.19 -0.48 1.12 16
10 N -0.24 -3.24 12.55 34.84 0.44 -2.80 16
11 N -0.51 -5.75 7.37 32.36 0.24 -5.51 16
12 H 0.44 3.50 8.96 -182.77 -1.64 1.86 16
13 C 0.13 1.49 7.34 -84.18 -0.62 0.87 16
14 C -0.14 -1.29 10.03 -39.79 -0.40 -1.69 16
15 C -0.07 -0.57 9.96 -39.90 -0.40 -0.96 16
16 C -0.16 -1.39 9.97 -39.95 -0.40 -1.79 16
17 C -0.04 -0.37 10.07 -39.58 -0.40 -0.77 16
18 C -0.16 -2.02 6.33 -105.21 -0.67 -2.69 16
19 C 0.12 1.93 6.41 -2.41 -0.02 1.91 16
20 C -0.11 -1.64 3.09 -89.22 -0.28 -1.92 16
21 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16
22 C 0.16 3.08 4.40 -4.04 -0.02 3.06 16
23 N -0.73 -18.39 5.48 -59.91 -0.33 -18.72 16
24 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16
25 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16
26 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16
27 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16
28 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16
29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
30 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16
31 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
32 H 0.07 0.76 6.77 -51.93 -0.35 0.41 16
33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16
34 H 0.06 0.71 6.84 -51.93 -0.36 0.35 16
35 H 0.08 0.66 7.85 -51.93 -0.41 0.26 16
36 H 0.08 0.52 7.30 -51.93 -0.38 0.14 16
37 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16
38 H 0.11 0.94 7.95 -51.93 -0.41 0.53 16
39 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16
40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16
41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16
42 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16
43 H 0.08 1.63 7.88 -51.93 -0.41 1.22 16
44 H 0.08 1.33 7.76 -51.93 -0.40 0.93 16
45 H 0.03 0.50 6.53 -51.93 -0.34 0.16 16
46 H 0.02 0.43 6.91 -51.93 -0.36 0.07 16
47 H 0.38 10.28 7.61 -40.82 -0.31 9.97 16
48 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16
LS Contribution 392.48 15.07 5.91 5.91
Total: -1.00 -36.73 392.48 -11.00 -47.73
By element:
Atomic # 1 Polarization: 16.22 SS G_CDS: -8.29 Total: 7.93 kcal
Atomic # 6 Polarization: -0.66 SS G_CDS: -4.19 Total: -4.86 kcal
Atomic # 7 Polarization: -64.46 SS G_CDS: 0.51 Total: -63.95 kcal
Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal
Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -36.73 -11.00 -47.73 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001325598408.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.910 kcal
(2) G-P(sol) polarization free energy of solvation -36.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.178 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.728 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds