Wall clock time and date at job start Sat Apr 11 2020 06:43:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09002 * 110.30551 * 2 1
4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3
5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1
6 6 C 1.34776 * 127.83552 * 219.56414 * 5 4 2
7 7 O 1.21286 * 120.00097 * 180.02562 * 6 5 4
8 8 C 1.50705 * 120.00199 * 0.02623 * 6 5 4
9 9 C 1.50692 * 109.47372 * 179.97438 * 8 6 5
10 10 N 1.30250 * 126.11066 * 269.69457 * 9 8 6
11 11 N 1.39868 * 110.08468 * 179.90056 * 10 9 8
12 12 H 0.97000 * 125.46150 * 180.18360 * 11 10 9
13 13 C 1.37039 * 109.07972 * 0.37032 * 11 10 9
14 14 C 1.39286 * 133.84954 * 179.79285 * 13 11 10
15 15 C 1.36593 * 119.85056 * 180.02562 * 14 13 11
16 16 C 1.38971 * 120.81409 * 359.97438 * 15 14 13
17 17 C 1.36458 * 120.62849 * 0.02562 * 16 15 14
18 18 C 1.39951 * 119.63760 * 359.97438 * 17 16 15
19 19 C 1.48140 * 104.32775 * 39.58831 * 5 4 2
20 20 C 1.54281 * 110.34397 * 122.17674 * 2 1 3
21 21 H 1.09002 * 110.34142 * 237.84781 * 20 2 1
22 22 C 1.53003 * 110.34211 * 359.97438 * 20 2 1
23 23 N 1.46505 * 109.47422 * 185.00055 * 22 20 2
24 24 C 1.36931 * 120.00405 * 180.02562 * 23 22 20
25 25 H 1.07998 * 119.99680 * 359.97438 * 24 23 22
26 26 C 1.38811 * 120.00347 * 180.02562 * 24 23 22
27 27 N 1.31617 * 119.99780 * 359.97438 * 26 24 23
28 28 Si 1.86797 * 120.00291 * 179.97438 * 26 24 23
29 29 H 1.48500 * 109.46949 * 59.99586 * 28 26 24
30 30 H 1.48491 * 109.47148 * 179.97438 * 28 26 24
31 31 H 1.48506 * 109.47036 * 299.99906 * 28 26 24
32 32 H 1.08999 * 109.47069 * 299.29750 * 1 2 3
33 33 H 1.09004 * 109.47187 * 59.29880 * 1 2 3
34 34 H 1.09004 * 109.47207 * 179.30026 * 1 2 3
35 35 H 1.08990 * 110.40604 * 336.00312 * 4 2 1
36 36 H 1.09000 * 110.40401 * 98.43734 * 4 2 1
37 37 H 1.08993 * 109.47329 * 300.00568 * 8 6 5
38 38 H 1.09006 * 109.46605 * 59.99917 * 8 6 5
39 39 H 1.07992 * 120.07652 * 359.97041 * 14 13 11
40 40 H 1.07999 * 119.58972 * 180.02562 * 15 14 13
41 41 H 1.07999 * 119.68429 * 180.02562 * 16 15 14
42 42 H 1.08006 * 120.18302 * 179.97438 * 17 16 15
43 43 H 1.08998 * 110.41105 * 201.63246 * 19 5 4
44 44 H 1.09004 * 110.40870 * 79.19127 * 19 5 4
45 45 H 1.08994 * 109.47367 * 305.00343 * 22 20 2
46 46 H 1.09001 * 109.46773 * 65.00890 * 22 20 2
47 47 H 0.97005 * 119.99632 * 0.02562 * 23 22 20
48 48 H 0.97002 * 120.00175 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9082 1.0223 0.0000
4 6 2.0689 -0.7718 -1.2238
5 7 3.2692 -1.4794 -0.7205
6 6 4.4459 -1.6630 -1.3514
7 8 5.3405 -2.2702 -0.8018
8 6 4.6502 -1.1138 -2.7399
9 6 6.0397 -1.4526 -3.2147
10 7 7.1058 -0.7221 -3.0524
11 7 8.2142 -1.3567 -3.6223
12 1 9.1203 -1.0103 -3.6269
13 6 7.8144 -2.5443 -4.1769
14 6 8.4759 -3.5601 -4.8631
15 6 7.7788 -4.6494 -5.3026
16 6 6.4126 -4.7601 -5.0738
17 6 5.7381 -3.7807 -4.4045
18 6 6.4300 -2.6547 -3.9441
19 6 2.8824 -1.9401 0.6333
20 6 2.0663 -0.7703 1.2244
21 1 2.7080 -0.1264 1.8258
22 6 0.9061 -1.3010 2.0690
23 7 1.4328 -1.9243 3.2857
24 6 0.5745 -2.4739 4.2002
25 1 -0.4908 -2.4475 4.0247
26 6 1.0736 -3.0640 5.3533
27 7 2.3718 -3.0957 5.5674
28 14 -0.0974 -3.8131 6.6011
29 1 -0.8829 -4.8953 5.9553
30 1 0.6803 -4.3752 7.7344
31 1 -1.0205 -2.7647 7.1053
32 1 -0.3633 0.5029 0.8962
33 1 -0.3634 0.5247 -0.8837
34 1 -0.3634 -1.0276 -0.0126
35 1 1.3271 -1.4869 -1.5790
36 1 2.3421 -0.0790 -2.0198
37 1 3.9174 -1.5538 -3.4162
38 1 4.5259 -0.0310 -2.7242
39 1 9.5373 -3.4861 -5.0479
40 1 8.2960 -5.4347 -5.8339
41 1 5.8795 -5.6296 -5.4291
42 1 4.6762 -3.8740 -4.2310
43 1 3.7692 -2.1288 1.2384
44 1 2.2675 -2.8377 0.5681
45 1 0.2467 -0.4764 2.3394
46 1 0.3472 -2.0401 1.4950
47 1 2.3897 -1.9476 3.4435
48 1 2.7206 -3.5083 6.3730
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001325598408.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:34
Heat of formation + Delta-G solvation = 40.862893 kcal
Electronic energy + Delta-G solvation = -29021.021270 eV
Core-core repulsion = 25076.288057 eV
Total energy + Delta-G solvation = -3944.733213 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.32731 -41.14610 -39.25604 -38.08170 -36.38868 -34.54666 -34.19839 -32.81258
-31.59396 -30.82778 -30.47296 -29.33266 -27.37121 -26.67094 -24.84326 -23.98246
-23.53790 -23.14643 -21.64552 -20.18213 -20.01588 -18.97120 -18.81270 -18.23084
-17.87076 -17.13184 -16.65102 -16.52460 -16.21538 -16.13722 -15.69075 -15.39212
-15.28958 -15.18445 -14.83708 -14.69016 -14.47145 -14.18164 -13.75417 -13.48471
-13.26397 -13.09931 -12.96552 -12.85348 -12.82280 -12.80450 -12.73399 -12.70361
-12.20912 -12.00960 -11.81100 -11.76755 -11.65891 -11.47682 -11.33219 -11.23432
-10.87749 -10.84551 -9.78225 -9.66289 -8.97274 -8.96408 -7.93466 -5.22613
-0.03044 0.55934 1.26560 1.46845 1.50603 1.56674 1.56739 1.69456
2.04924 2.57082 2.85748 3.32136 3.39626 3.46228 3.53827 3.64035
3.74119 3.84412 3.88980 4.14674 4.19513 4.27203 4.30605 4.40279
4.46030 4.47595 4.48066 4.54448 4.63430 4.64033 4.73041 4.84131
4.89814 4.93404 4.96838 5.01901 5.06476 5.23223 5.25927 5.30746
5.36333 5.47622 5.50359 5.52026 5.60589 5.62862 5.95142 6.28182
6.35537 6.55514 6.57073 7.09797 7.33632 8.11538 8.32473 9.30304
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.014690 B = 0.002232 C = 0.002084
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1905.615898 B =12542.103632 C =13434.349670
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.090 4.090
3 H 0.094 0.906
4 C 0.102 3.898
5 N -0.620 5.620
6 C 0.532 3.468
7 O -0.591 6.591
8 C -0.047 4.047
9 C 0.110 3.890
10 N -0.271 5.271
11 N -0.508 5.508
12 H 0.449 0.551
13 C 0.109 3.891
14 C -0.151 4.151
15 C -0.069 4.069
16 C -0.161 4.161
17 C -0.054 4.054
18 C -0.193 4.193
19 C 0.122 3.878
20 C -0.099 4.099
21 H 0.059 0.941
22 C 0.164 3.836
23 N -0.751 5.751
24 C -0.241 4.241
25 H 0.081 0.919
26 C -0.082 4.082
27 N -0.974 5.974
28 Si 0.975 3.025
29 H -0.276 1.276
30 H -0.299 1.299
31 H -0.275 1.275
32 H 0.053 0.947
33 H 0.085 0.915
34 H 0.057 0.943
35 H 0.095 0.905
36 H 0.120 0.880
37 H 0.156 0.844
38 H 0.140 0.860
39 H 0.148 0.852
40 H 0.161 0.839
41 H 0.152 0.848
42 H 0.140 0.860
43 H 0.039 0.961
44 H 0.067 0.933
45 H 0.036 0.964
46 H 0.032 0.968
47 H 0.369 0.631
48 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.143 4.305 -30.292 30.875
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.109 4.109
3 H 0.112 0.888
4 C -0.019 4.019
5 N -0.353 5.353
6 C 0.321 3.679
7 O -0.471 6.471
8 C -0.088 4.088
9 C -0.069 4.069
10 N -0.086 5.086
11 N -0.225 5.225
12 H 0.295 0.705
13 C -0.007 4.007
14 C -0.173 4.173
15 C -0.089 4.089
16 C -0.181 4.181
17 C -0.074 4.074
18 C -0.201 4.201
19 C -0.002 4.002
20 C -0.119 4.119
21 H 0.078 0.922
22 C 0.038 3.962
23 N -0.393 5.393
24 C -0.373 4.373
25 H 0.099 0.901
26 C -0.273 4.273
27 N -0.626 5.626
28 Si 0.804 3.196
29 H -0.202 1.202
30 H -0.226 1.226
31 H -0.201 1.201
32 H 0.073 0.927
33 H 0.103 0.897
34 H 0.076 0.924
35 H 0.113 0.887
36 H 0.139 0.861
37 H 0.173 0.827
38 H 0.158 0.842
39 H 0.166 0.834
40 H 0.179 0.821
41 H 0.170 0.830
42 H 0.158 0.842
43 H 0.058 0.942
44 H 0.085 0.915
45 H 0.053 0.947
46 H 0.050 0.950
47 H 0.200 0.800
48 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 5.030 5.051 -29.539 30.387
hybrid contribution 0.617 -1.054 1.466 1.909
sum 5.647 3.997 -28.073 28.913
Atomic orbital electron populations
1.21869 0.92658 1.02620 1.02868 1.22078 0.97435 0.99432 0.91996
0.88769 1.22900 0.85548 0.96345 0.97120 1.49067 1.13564 1.55599
1.17037 1.20616 0.79976 0.79182 0.88103 1.90750 1.43108 1.44201
1.69014 1.20127 0.90935 1.05499 0.92266 1.23049 0.94873 0.92115
0.96828 1.76395 0.93934 1.22132 1.16141 1.45827 1.09743 1.16256
1.50652 0.70479 1.19259 0.94466 0.89449 0.97530 1.20204 1.01196
0.93297 1.02602 1.21182 0.94336 0.96732 0.96641 1.21075 0.95185
1.00108 1.01700 1.20662 1.00692 0.91092 0.94966 1.20043 0.93924
0.98403 1.07706 1.22126 0.97641 0.97293 0.83118 1.22193 0.96611
0.96047 0.97022 0.92222 1.21033 0.94153 0.95001 0.86002 1.42720
1.05911 1.69371 1.21301 1.19636 0.90687 1.28177 0.98767 0.90107
1.25633 0.97345 1.03323 1.01042 1.69842 1.12650 1.51687 1.28377
0.85183 0.77720 0.78446 0.78263 1.20183 1.22599 1.20096 0.92748
0.89653 0.92410 0.88670 0.86142 0.82676 0.84190 0.83407 0.82141
0.83018 0.84224 0.94237 0.91488 0.94665 0.95030 0.80016 0.94199
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.44 7.93 71.98 0.57 -1.87 16
2 C -0.09 -1.76 3.65 -9.89 -0.04 -1.80 16
3 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
4 C 0.10 1.60 6.46 86.54 0.56 2.16 16
5 N -0.62 -16.27 3.32 -807.96 -2.68 -18.95 16
6 C 0.53 15.49 7.91 87.66 0.69 16.18 16
7 O -0.59 -24.44 16.30 -3.05 -0.05 -24.49 16
8 C -0.05 -0.89 5.27 29.10 0.15 -0.74 16
9 C 0.11 2.79 5.93 44.78 0.27 3.06 16
10 N -0.27 -7.55 12.55 -43.70 -0.55 -8.10 16
11 N -0.51 -11.79 7.37 -51.54 -0.38 -12.17 16
12 H 0.45 7.47 8.96 -213.47 -1.91 5.55 16
13 C 0.11 2.49 7.34 39.21 0.29 2.77 16
14 C -0.15 -2.51 10.03 22.14 0.22 -2.29 16
15 C -0.07 -0.95 9.96 22.06 0.22 -0.73 16
16 C -0.16 -2.46 9.97 22.03 0.22 -2.24 16
17 C -0.05 -1.05 10.07 22.27 0.22 -0.82 16
18 C -0.19 -4.72 6.33 -20.24 -0.13 -4.85 16
19 C 0.12 4.18 6.41 86.54 0.55 4.73 16
20 C -0.10 -3.10 3.09 -9.89 -0.03 -3.13 16
21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
22 C 0.16 6.21 4.40 86.38 0.38 6.59 16
23 N -0.75 -38.68 5.48 -343.45 -1.88 -40.57 16
24 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16
25 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16
26 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16
27 N -0.97 -62.09 13.06 21.65 0.28 -61.81 16
28 Si 0.98 46.95 29.55 68.60 2.03 48.97 16
29 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
30 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16
31 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
32 H 0.05 1.09 6.77 -2.39 -0.02 1.07 16
33 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16
34 H 0.06 1.08 6.84 -2.38 -0.02 1.06 16
35 H 0.10 1.22 7.85 -2.39 -0.02 1.21 16
36 H 0.12 0.94 7.30 -2.39 -0.02 0.92 16
37 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16
38 H 0.14 1.87 7.95 -2.38 -0.02 1.85 16
39 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16
40 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16
41 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16
42 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16
43 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16
44 H 0.07 2.41 7.76 -2.39 -0.02 2.39 16
45 H 0.04 1.30 6.53 -2.39 -0.02 1.29 16
46 H 0.03 1.16 6.91 -2.39 -0.02 1.15 16
47 H 0.37 20.89 7.61 -92.70 -0.71 20.18 16
48 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16
Total: -1.00 -85.87 392.48 0.61 -85.25
By element:
Atomic # 1 Polarization: 33.50 SS G_CDS: -1.62 Total: 31.88 kcal
Atomic # 6 Polarization: -5.48 SS G_CDS: 5.46 Total: -0.02 kcal
Atomic # 7 Polarization: -136.39 SS G_CDS: -5.21 Total: -141.60 kcal
Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal
Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal
Total: -85.87 0.61 -85.25 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001325598408.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.118 kcal
(2) G-P(sol) polarization free energy of solvation -85.868 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.249 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.255 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.863 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds