Wall clock time and date at job start Sat Apr 11 2020 06:43:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08999 * 109.46946 * 2 1
4 4 O 1.42904 * 109.47268 * 119.99793 * 2 1 3
5 5 C 1.52999 * 109.47115 * 240.00187 * 2 1 3
6 6 C 1.52996 * 109.47187 * 173.88214 * 5 2 1
7 7 C 1.52994 * 109.47461 * 65.47103 * 6 5 2
8 8 C 1.52998 * 109.47193 * 185.47881 * 6 5 2
9 9 C 1.53006 * 109.46729 * 305.47017 * 6 5 2
10 10 N 1.46504 * 109.47196 * 180.02562 * 9 6 5
11 11 C 1.34766 * 119.99971 * 180.02562 * 10 9 6
12 12 O 1.21346 * 120.00598 * 359.97438 * 11 10 9
13 13 C 1.49455 * 119.99635 * 179.97438 * 11 10 9
14 14 O 1.21343 * 120.00201 * 359.97438 * 13 11 10
15 15 N 1.34779 * 119.99486 * 179.97438 * 13 11 10
16 16 C 1.47425 * 125.65328 * 359.69085 * 15 13 11
17 17 C 1.55134 * 104.72294 * 155.81731 * 16 15 13
18 18 C 1.55148 * 101.48365 * 37.29832 * 17 16 15
19 19 O 1.42893 * 110.72387 * 82.69627 * 18 17 16
20 20 C 1.50705 * 110.87046 * 205.89578 * 18 17 16
21 21 H 1.08009 * 119.99953 * 118.22621 * 20 18 17
22 22 C 1.37871 * 120.00280 * 298.23002 * 20 18 17
23 23 N 1.31517 * 120.00413 * 183.10911 * 22 20 18
24 24 Si 1.86809 * 119.99852 * 3.10110 * 22 20 18
25 25 H 1.48499 * 109.46747 * 84.77131 * 24 22 20
26 26 H 1.48501 * 109.46900 * 204.77280 * 24 22 20
27 27 H 1.48500 * 109.46949 * 324.77143 * 24 22 20
28 28 C 1.47022 * 125.64619 * 180.02562 * 15 13 11
29 29 H 1.08998 * 109.47341 * 180.02562 * 1 2 3
30 30 H 1.09003 * 109.46957 * 300.00223 * 1 2 3
31 31 H 1.09000 * 109.47394 * 60.00004 * 1 2 3
32 32 H 0.96702 * 113.99708 * 59.99979 * 4 2 1
33 33 H 1.09006 * 109.46514 * 293.87491 * 5 2 1
34 34 H 1.08998 * 109.47418 * 53.87178 * 5 2 1
35 35 H 1.09003 * 109.47187 * 50.79840 * 7 6 5
36 36 H 1.09004 * 109.47141 * 170.79779 * 7 6 5
37 37 H 1.09007 * 109.47421 * 290.79560 * 7 6 5
38 38 H 1.08994 * 109.47318 * 57.14183 * 8 6 5
39 39 H 1.09004 * 109.47259 * 177.15340 * 8 6 5
40 40 H 1.09003 * 109.46592 * 297.14612 * 8 6 5
41 41 H 1.09001 * 109.47445 * 300.00278 * 9 6 5
42 42 H 1.08998 * 109.46881 * 60.00413 * 9 6 5
43 43 H 0.97001 * 119.99376 * 359.97438 * 10 9 6
44 44 H 1.08997 * 110.36798 * 274.74690 * 16 15 13
45 45 H 1.09004 * 110.36285 * 37.06926 * 16 15 13
46 46 H 1.08997 * 111.19161 * 279.18979 * 17 16 15
47 47 H 1.09003 * 110.90299 * 155.27547 * 17 16 15
48 48 H 0.96703 * 114.00694 * 185.01813 * 19 18 17
49 49 H 0.96999 * 120.00330 * 179.97438 * 23 22 20
50 50 H 1.09004 * 109.88370 * 300.44118 * 28 15 13
51 51 H 1.08999 * 109.88626 * 61.44863 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0064 -0.6736 1.1668
5 6 2.0400 -0.7212 -1.2493
6 6 3.5622 -0.5894 -1.3285
7 6 4.2005 -1.3346 -0.1546
8 6 4.0584 -1.1910 -2.6449
9 6 3.9500 0.8893 -1.2655
10 7 5.4076 1.0156 -1.3420
11 6 5.9812 2.2345 -1.3041
12 8 5.2905 3.2275 -1.2071
13 6 7.4682 2.3633 -1.3816
14 8 8.1590 1.3703 -1.4781
15 7 8.0418 3.5823 -1.3442
16 6 7.3253 4.8662 -1.2360
17 6 8.3598 5.8443 -0.6195
18 6 9.6710 5.3809 -1.3074
19 8 9.7943 5.9644 -2.6059
20 6 10.8701 5.7161 -0.4583
21 1 11.5043 4.9262 -0.0836
22 6 11.1576 7.0310 -0.1598
23 7 12.2376 7.3280 0.5294
24 14 10.0131 8.3910 -0.7346
25 1 8.9079 8.5542 0.2437
26 1 10.7712 9.6635 -0.8419
27 1 9.4507 8.0364 -2.0624
28 6 9.4855 3.8524 -1.4116
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 1.7210 -1.5952 1.2329
33 1 1.7689 -1.7757 -1.1961
34 1 1.5899 -0.2746 -2.1359
35 1 3.7969 -2.3459 -0.1035
36 1 5.2801 -1.3810 -0.2975
37 1 3.9792 -0.8077 0.7737
38 1 3.5653 -0.6939 -3.4802
39 1 5.1366 -1.0520 -2.7244
40 1 3.8267 -2.2559 -2.6678
41 1 3.4953 1.4202 -2.1018
42 1 3.5966 1.3179 -0.3277
43 1 5.9597 0.2218 -1.4191
44 1 7.0142 5.2113 -2.2219
45 1 6.4617 4.7644 -0.5788
46 1 8.4216 5.7223 0.4618
47 1 8.1243 6.8757 -0.8820
48 1 10.5573 5.6479 -3.1086
49 1 12.4401 8.2532 0.7391
50 1 9.9938 3.3600 -0.5825
51 1 9.8863 3.4915 -2.3588
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001332243234.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:47
Heat of formation + Delta-G solvation = -164.461932 kcal
Electronic energy + Delta-G solvation = -31358.791515 eV
Core-core repulsion = 27065.553078 eV
Total energy + Delta-G solvation = -4293.238436 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.203 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.69676 -39.63805 -38.51144 -37.48976 -36.59556 -34.70050 -33.52430 -32.43192
-31.64517 -30.35967 -28.50190 -27.64514 -27.43076 -27.09982 -25.64735 -23.33463
-22.23624 -21.98772 -20.20473 -19.73286 -19.24793 -17.72299 -17.44857 -16.87836
-16.53791 -16.29004 -16.02650 -15.46063 -15.27240 -15.08606 -14.76855 -14.67711
-14.44753 -14.19205 -13.80328 -13.56258 -13.31730 -13.11541 -13.01139 -12.91151
-12.62186 -12.55989 -12.45794 -12.20997 -12.15559 -12.05139 -11.85257 -11.69566
-11.39241 -11.30436 -11.25649 -11.05046 -10.92005 -10.89212 -10.54753 -10.29293
-10.08863 -10.00309 -9.28158 -9.23571 -9.01975 -8.75264 -8.52398 -8.28968
-6.22289 -4.34876 1.63111 2.48480 3.31170 3.41763 3.43068 3.61591
3.70537 3.92666 4.11109 4.35216 4.38139 4.42084 4.53535 4.65286
4.76596 4.78699 5.03528 5.07138 5.11560 5.21028 5.24326 5.32478
5.36406 5.37119 5.39168 5.49209 5.60986 5.62204 5.67442 5.67592
5.73927 5.79954 5.83358 5.93213 5.99197 6.06282 6.18593 6.26582
6.41036 6.47576 6.61415 6.67335 7.07436 7.14388 7.25270 7.44004
7.68034 7.84594 8.17674 8.21628 8.71639 8.87188 9.40428 10.87827
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.021948 B = 0.002339 C = 0.002250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1275.458368 B =11969.146274 C =12443.106707
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.093 3.907
3 H 0.104 0.896
4 O -0.555 6.555
5 C -0.137 4.137
6 C -0.072 4.072
7 C -0.150 4.150
8 C -0.147 4.147
9 C 0.125 3.875
10 N -0.701 5.701
11 C 0.510 3.490
12 O -0.515 6.515
13 C 0.511 3.489
14 O -0.538 6.538
15 N -0.574 5.574
16 C 0.098 3.902
17 C -0.129 4.129
18 C 0.216 3.784
19 O -0.572 6.572
20 C -0.552 4.552
21 H 0.079 0.921
22 C 0.090 3.910
23 N -0.886 5.886
24 Si 0.875 3.125
25 H -0.282 1.282
26 H -0.300 1.300
27 H -0.227 1.227
28 C 0.093 3.907
29 H 0.057 0.943
30 H 0.064 0.936
31 H 0.065 0.935
32 H 0.371 0.629
33 H 0.072 0.928
34 H 0.075 0.925
35 H 0.053 0.947
36 H 0.050 0.950
37 H 0.086 0.914
38 H 0.057 0.943
39 H 0.059 0.941
40 H 0.059 0.941
41 H 0.069 0.931
42 H 0.078 0.922
43 H 0.411 0.589
44 H 0.071 0.929
45 H 0.092 0.908
46 H 0.089 0.911
47 H 0.077 0.923
48 H 0.365 0.635
49 H 0.267 0.733
50 H 0.080 0.920
51 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.531 -17.283 -4.199 28.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C 0.035 3.965
3 H 0.121 0.879
4 O -0.361 6.361
5 C -0.175 4.175
6 C -0.072 4.072
7 C -0.207 4.207
8 C -0.204 4.204
9 C 0.001 3.999
10 N -0.356 5.356
11 C 0.291 3.709
12 O -0.391 6.391
13 C 0.293 3.707
14 O -0.416 6.416
15 N -0.306 5.306
16 C -0.024 4.024
17 C -0.167 4.167
18 C 0.175 3.825
19 O -0.378 6.378
20 C -0.589 4.589
21 H 0.097 0.903
22 C -0.116 4.116
23 N -0.522 5.522
24 Si 0.702 3.298
25 H -0.208 1.208
26 H -0.228 1.228
27 H -0.150 1.150
28 C -0.029 4.029
29 H 0.076 0.924
30 H 0.083 0.917
31 H 0.084 0.916
32 H 0.218 0.782
33 H 0.091 0.909
34 H 0.094 0.906
35 H 0.072 0.928
36 H 0.069 0.931
37 H 0.104 0.896
38 H 0.076 0.924
39 H 0.078 0.922
40 H 0.078 0.922
41 H 0.088 0.912
42 H 0.096 0.904
43 H 0.248 0.752
44 H 0.089 0.911
45 H 0.110 0.890
46 H 0.107 0.893
47 H 0.095 0.905
48 H 0.212 0.788
49 H 0.077 0.923
50 H 0.099 0.901
51 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -22.861 -16.130 -3.813 28.237
hybrid contribution -0.001 -0.422 -0.571 0.710
sum -22.862 -16.551 -4.384 28.563
Atomic orbital electron populations
1.22509 0.96499 1.02403 1.02931 1.22069 0.92696 0.97285 0.84472
0.87851 1.86650 1.76339 1.28993 1.44083 1.22341 0.94435 1.01645
0.99113 1.20738 0.95475 0.94214 0.96798 1.22111 0.99779 1.00047
0.98798 1.21946 1.01563 1.00852 0.96066 1.21641 0.79570 0.95976
1.02671 1.45766 1.08087 1.08490 1.73266 1.20235 0.89097 0.83859
0.77695 1.90714 1.64470 1.36489 1.47402 1.19623 0.88123 0.83169
0.79736 1.90721 1.64219 1.36175 1.50526 1.48439 1.09552 1.05457
1.67199 1.22759 0.95859 0.82013 1.01722 1.23196 0.94267 0.98449
1.00790 1.20012 0.94154 0.85773 0.82523 1.86523 1.51612 1.69616
1.30071 1.21157 1.10291 0.94293 1.33169 0.90283 1.24939 0.94690
0.98948 0.93017 1.69923 1.24940 1.19562 1.37764 0.87083 0.80651
0.79990 0.82058 1.20836 1.22763 1.14950 1.23011 0.78262 0.99784
1.01841 0.92434 0.91726 0.91552 0.78164 0.90911 0.90631 0.92798
0.93142 0.89554 0.92392 0.92200 0.92211 0.91235 0.90439 0.75162
0.91110 0.89005 0.89260 0.90493 0.78768 0.92295 0.90149 0.91752
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -0.89 9.53 37.16 0.35 -0.54 16
2 C 0.09 0.55 3.24 -26.73 -0.09 0.47 16
3 H 0.10 0.76 5.99 -51.93 -0.31 0.45 16
4 O -0.56 -3.71 10.14 -35.23 -0.36 -4.07 16
5 C -0.14 -0.69 4.07 -26.73 -0.11 -0.80 16
6 C -0.07 -0.49 0.56 -154.51 -0.09 -0.57 16
7 C -0.15 -1.09 7.22 37.15 0.27 -0.82 16
8 C -0.15 -0.97 8.33 37.16 0.31 -0.66 16
9 C 0.12 1.18 4.06 -4.04 -0.02 1.16 16
10 N -0.70 -8.36 4.97 -60.73 -0.30 -8.67 16
11 C 0.51 7.96 7.86 -11.59 -0.09 7.87 16
12 O -0.52 -8.80 13.77 5.50 0.08 -8.73 16
13 C 0.51 9.25 7.91 -11.58 -0.09 9.16 16
14 O -0.54 -10.42 16.80 5.50 0.09 -10.33 16
15 N -0.57 -11.02 3.32 -170.88 -0.57 -11.59 16
16 C 0.10 1.84 6.07 -2.41 -0.01 1.82 16
17 C -0.13 -2.71 4.87 -24.47 -0.12 -2.83 16
18 C 0.22 4.82 0.67 -89.94 -0.06 4.76 16
19 O -0.57 -12.37 10.38 -35.23 -0.37 -12.73 16
20 C -0.55 -14.62 8.82 -34.44 -0.30 -14.93 16
21 H 0.08 2.27 7.82 -52.48 -0.41 1.86 16
22 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16
23 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16
24 Si 0.87 21.17 23.91 -169.99 -4.06 17.11 16
25 H -0.28 -6.66 7.08 56.52 0.40 -6.26 16
26 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16
27 H -0.23 -5.35 5.50 56.52 0.31 -5.04 16
28 C 0.09 1.90 6.21 -3.06 -0.02 1.88 16
29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16
30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16
31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
32 H 0.37 1.26 9.05 45.56 0.41 1.67 16
33 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16
34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16
35 H 0.05 0.32 8.10 -51.93 -0.42 -0.10 16
36 H 0.05 0.41 7.12 -51.93 -0.37 0.04 16
37 H 0.09 0.75 5.94 -51.93 -0.31 0.44 16
38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
39 H 0.06 0.45 6.79 -51.93 -0.35 0.10 16
40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16
41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
42 H 0.08 0.80 6.20 -51.93 -0.32 0.48 16
43 H 0.41 4.60 5.72 -40.82 -0.23 4.36 16
44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
45 H 0.09 1.64 6.14 -51.93 -0.32 1.32 16
46 H 0.09 1.89 8.04 -51.93 -0.42 1.48 16
47 H 0.08 1.64 5.06 -51.93 -0.26 1.37 16
48 H 0.37 6.81 9.08 45.56 0.41 7.23 16
49 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
50 H 0.08 1.73 7.66 -51.93 -0.40 1.33 16
51 H 0.06 1.25 8.06 -51.93 -0.42 0.84 16
LS Contribution 390.15 15.07 5.88 5.88
Total: -1.00 -32.35 390.15 -5.75 -38.10
By element:
Atomic # 1 Polarization: 18.81 SS G_CDS: -6.75 Total: 12.06 kcal
Atomic # 6 Polarization: 8.50 SS G_CDS: -0.16 Total: 8.34 kcal
Atomic # 7 Polarization: -45.53 SS G_CDS: -0.10 Total: -45.62 kcal
Atomic # 8 Polarization: -35.31 SS G_CDS: -0.55 Total: -35.86 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -4.06 Total: 17.11 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -32.35 -5.75 -38.10 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332243234.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -126.365 kcal
(2) G-P(sol) polarization free energy of solvation -32.350 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal
(6) G-S(sol) free energy of system = (1) + (5) -164.462 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds