Wall clock time and date at job start Sat Apr 11 2020 06:44:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08999 * 109.47106 * 2 1
4 4 N 1.46505 * 109.47311 * 120.00141 * 2 1 3
5 5 C 1.34779 * 119.99767 * 275.00441 * 4 2 1
6 6 O 1.21287 * 120.00002 * 359.97438 * 5 4 2
7 7 C 1.50696 * 120.00008 * 180.02562 * 5 4 2
8 8 C 1.52998 * 109.47230 * 179.97438 * 7 5 4
9 9 N 1.46504 * 109.47335 * 179.97438 * 8 7 5
10 10 C 1.36041 * 126.34782 * 264.69306 * 9 8 7
11 11 N 1.30106 * 110.09572 * 179.87604 * 10 9 8
12 12 C 1.35782 * 109.64815 * 0.38446 * 11 10 9
13 13 C 1.39740 * 133.60758 * 179.76072 * 12 11 10
14 14 C 1.36594 * 119.89108 * 180.02562 * 13 12 11
15 15 C 1.38777 * 120.66768 * 359.97438 * 14 13 12
16 16 C 1.37853 * 120.45351 * 0.04877 * 15 14 13
17 17 C 1.38046 * 126.34734 * 84.99689 * 9 8 7
18 18 C 1.53002 * 109.47471 * 239.99907 * 2 1 3
19 19 C 1.53503 * 114.20285 * 60.00247 * 18 2 1
20 20 N 1.47066 * 87.98596 * 87.51823 * 19 18 2
21 21 C 1.36938 * 136.05640 * 207.07967 * 20 19 18
22 22 H 1.08004 * 119.99749 * 0.02562 * 21 20 19
23 23 C 1.38812 * 119.99984 * 180.02562 * 21 20 19
24 24 N 1.31618 * 119.99909 * 0.02562 * 23 21 20
25 25 Si 1.86803 * 119.99701 * 180.02562 * 23 21 20
26 26 H 1.48499 * 109.47078 * 60.00293 * 25 23 21
27 27 H 1.48498 * 109.46962 * 180.02562 * 25 23 21
28 28 H 1.48500 * 109.46870 * 300.00143 * 25 23 21
29 29 C 1.47060 * 87.88579 * 27.11915 * 20 19 18
30 30 H 1.09003 * 109.46727 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47339 * 299.99808 * 1 2 3
32 32 H 1.08998 * 109.47088 * 60.00094 * 1 2 3
33 33 H 0.96992 * 119.99996 * 94.99868 * 4 2 1
34 34 H 1.09004 * 109.46746 * 299.99656 * 7 5 4
35 35 H 1.08999 * 109.47576 * 59.99446 * 7 5 4
36 36 H 1.08994 * 109.47069 * 299.99798 * 8 7 5
37 37 H 1.09001 * 109.47054 * 60.00145 * 8 7 5
38 38 H 1.07999 * 124.95095 * 0.02562 * 10 9 8
39 39 H 1.08005 * 120.05024 * 359.97438 * 13 12 11
40 40 H 1.07998 * 119.66779 * 180.02562 * 14 13 12
41 41 H 1.08006 * 119.77625 * 180.02562 * 15 14 13
42 42 H 1.07995 * 120.15602 * 180.02562 * 16 15 14
43 43 H 1.08993 * 113.41318 * 286.80015 * 18 2 1
44 44 H 1.09000 * 113.46355 * 332.73775 * 19 18 2
45 45 H 1.09003 * 113.46309 * 202.30220 * 19 18 2
46 46 H 0.97003 * 119.99575 * 179.97438 * 24 23 21
47 47 H 1.09006 * 113.47077 * 87.66003 * 29 20 19
48 48 H 1.09003 * 113.47044 * 218.03568 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6907 1.1962
5 6 2.1470 -0.0183 2.3572
6 8 1.8589 1.1586 2.4115
7 6 2.6499 -0.7285 3.5875
8 6 2.7017 0.2547 4.7586
9 7 3.1901 -0.4359 5.9548
10 6 2.4258 -0.9932 6.9325
11 7 3.1854 -1.5254 7.8450
12 6 4.4902 -1.3382 7.5189
13 6 5.6964 -1.6910 8.1298
14 6 6.8819 -1.3522 7.5418
15 6 6.9031 -0.6593 6.3395
16 6 5.7256 -0.3005 5.7190
17 6 4.5111 -0.6366 6.3017
18 6 2.0400 -0.7213 -1.2492
19 6 1.5899 -0.0845 -2.5714
20 7 2.7723 0.7866 -2.4945
21 6 3.1105 2.0325 -2.9511
22 1 2.3996 2.6087 -3.5248
23 6 4.3669 2.5550 -2.6764
24 7 5.2333 1.8526 -1.9776
25 14 4.8278 4.2549 -3.2987
26 1 3.8906 5.2593 -2.7349
27 1 6.2139 4.5780 -2.8750
28 1 4.7456 4.2784 -4.7812
29 6 3.4321 -0.2697 -1.7123
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 2.2490 -1.6317 1.1526
34 1 1.9777 -1.5509 3.8325
35 1 3.6492 -1.1203 3.3979
36 1 3.3741 1.0767 4.5133
37 1 1.7025 0.6467 4.9483
38 1 1.3459 -0.9958 6.9478
39 1 5.6914 -2.2299 9.0658
40 1 7.8120 -1.6270 8.0168
41 1 7.8487 -0.3991 5.8870
42 1 5.7477 0.2383 4.7833
43 1 1.9119 -1.8028 -1.2075
44 1 0.6466 0.4562 -2.4938
45 1 1.6129 -0.7742 -3.4152
46 1 6.1114 2.2176 -1.7861
47 1 3.9458 -1.0087 -2.3273
48 1 4.0561 0.1135 -0.9049
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725257305.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:43
Heat of formation + Delta-G solvation = 94.827686 kcal
Electronic energy + Delta-G solvation = -29093.115617 eV
Core-core repulsion = 25150.722494 eV
Total energy + Delta-G solvation = -3942.393124 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.32450 -39.89683 -38.39140 -37.50347 -35.15288 -34.60788 -32.28141 -31.67321
-30.48151 -29.49810 -29.41285 -27.65630 -25.32411 -24.44612 -23.78978 -23.42941
-22.24492 -21.73614 -20.64709 -20.22317 -18.82774 -17.59583 -17.43074 -16.84231
-16.32779 -16.20265 -15.98547 -15.64389 -15.48372 -14.86970 -14.40288 -14.22351
-14.03186 -13.86419 -13.75629 -13.51731 -13.30917 -13.02044 -12.85109 -12.57874
-12.22361 -12.05717 -11.90359 -11.79300 -11.64609 -11.54781 -11.37102 -10.93304
-10.85658 -10.74063 -10.62439 -10.38422 -10.12700 -9.97626 -9.82896 -9.71889
-9.25374 -8.88393 -8.76033 -8.55028 -8.28239 -6.90010 -5.78058 -3.10339
0.79226 1.34908 2.32453 2.61476 2.71631 3.35041 3.39543 3.43540
3.44493 3.72454 4.08532 4.34525 4.41785 4.45255 4.45400 4.76677
4.86341 4.90241 5.06325 5.12272 5.18892 5.22291 5.24869 5.27675
5.30496 5.44964 5.51572 5.51946 5.59382 5.70713 5.83021 5.98367
5.99148 6.05843 6.24196 6.26412 6.35338 6.36464 6.39611 6.48675
6.59299 6.65943 6.69144 6.81063 6.91891 7.15261 7.27093 7.52744
7.65873 7.67378 7.96205 8.34466 9.02252 9.69487 10.62013 11.39265
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012206 B = 0.002516 C = 0.002236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2293.341491 B =11124.618063 C =12520.107814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.170 3.830
3 H 0.104 0.896
4 N -0.715 5.715
5 C 0.518 3.482
6 O -0.538 6.538
7 C -0.158 4.158
8 C 0.127 3.873
9 N -0.490 5.490
10 C 0.260 3.740
11 N -0.500 5.500
12 C 0.042 3.958
13 C -0.068 4.068
14 C -0.129 4.129
15 C -0.103 4.103
16 C -0.107 4.107
17 C 0.048 3.952
18 C -0.156 4.156
19 C 0.126 3.874
20 N -0.608 5.608
21 C -0.219 4.219
22 H 0.080 0.920
23 C -0.006 4.006
24 N -0.919 5.919
25 Si 0.911 3.089
26 H -0.283 1.283
27 H -0.290 1.290
28 H -0.285 1.285
29 C 0.160 3.840
30 H 0.049 0.951
31 H 0.053 0.947
32 H 0.069 0.931
33 H 0.396 0.604
34 H 0.098 0.902
35 H 0.100 0.900
36 H 0.100 0.900
37 H 0.105 0.895
38 H 0.213 0.787
39 H 0.126 0.874
40 H 0.127 0.873
41 H 0.130 0.870
42 H 0.125 0.875
43 H 0.069 0.931
44 H 0.044 0.956
45 H 0.034 0.966
46 H 0.253 0.747
47 H 0.024 0.976
48 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.965 -10.274 16.671 19.980
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.067 3.933
3 H 0.122 0.878
4 N -0.365 5.365
5 C 0.302 3.698
6 O -0.416 6.416
7 C -0.200 4.200
8 C 0.005 3.995
9 N -0.179 5.179
10 C -0.025 4.025
11 N -0.219 5.219
12 C -0.076 4.076
13 C -0.087 4.087
14 C -0.149 4.149
15 C -0.123 4.123
16 C -0.128 4.128
17 C -0.061 4.061
18 C -0.177 4.177
19 C -0.001 4.001
20 N -0.335 5.335
21 C -0.346 4.346
22 H 0.098 0.902
23 C -0.203 4.203
24 N -0.566 5.566
25 Si 0.741 3.259
26 H -0.210 1.210
27 H -0.215 1.215
28 H -0.212 1.212
29 C 0.034 3.966
30 H 0.068 0.932
31 H 0.072 0.928
32 H 0.087 0.913
33 H 0.230 0.770
34 H 0.117 0.883
35 H 0.118 0.882
36 H 0.119 0.881
37 H 0.124 0.876
38 H 0.229 0.771
39 H 0.144 0.856
40 H 0.145 0.855
41 H 0.148 0.852
42 H 0.143 0.857
43 H 0.087 0.913
44 H 0.062 0.938
45 H 0.052 0.948
46 H 0.063 0.937
47 H 0.041 0.959
48 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -4.270 -9.458 17.264 20.143
hybrid contribution 0.674 0.692 -1.416 1.714
sum -3.596 -8.766 15.848 18.465
Atomic orbital electron populations
1.22125 0.95931 1.01183 1.02286 1.20635 0.92766 0.98308 0.81638
0.87834 1.46053 1.66788 1.13798 1.09873 1.20133 0.78004 0.87237
0.84392 1.90753 1.50136 1.15634 1.85039 1.22007 1.04460 0.99907
0.93576 1.21563 1.02767 0.94087 0.81120 1.45546 1.04789 1.47170
1.20436 1.25367 0.98928 0.93743 0.84492 1.70456 1.00837 1.23608
1.26990 1.19080 0.92213 1.02069 0.94235 1.19997 0.89205 0.99793
0.99729 1.20653 0.97545 1.00415 0.96320 1.20934 0.97319 0.98494
0.95520 1.20088 0.89219 1.02662 1.00813 1.18941 0.85479 1.03654
0.98024 1.23287 1.02145 0.97488 0.94732 1.22415 0.92600 0.92129
0.92930 1.45604 1.12205 1.12621 1.63036 1.18867 0.98054 0.89024
1.28658 0.90228 1.24770 0.96201 0.98606 1.00700 1.69808 1.06664
1.37131 1.43001 0.86215 0.77485 0.83826 0.78345 1.20992 1.21543
1.21207 1.22095 0.91343 0.88711 0.94454 0.93161 0.92802 0.91258
0.77042 0.88348 0.88197 0.88124 0.87626 0.77093 0.85576 0.85460
0.85201 0.85726 0.91300 0.93811 0.94831 0.93684 0.95877 0.90972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.21 9.29 37.15 0.35 -1.86 16
2 C 0.17 2.80 2.41 -67.93 -0.16 2.63 16
3 H 0.10 2.27 7.36 -51.93 -0.38 1.89 16
4 N -0.72 -9.45 5.08 -53.81 -0.27 -9.73 16
5 C 0.52 7.02 7.79 -10.99 -0.09 6.94 16
6 O -0.54 -9.59 15.65 5.55 0.09 -9.51 16
7 C -0.16 -1.48 6.02 -27.89 -0.17 -1.65 16
8 C 0.13 1.22 5.45 -4.04 -0.02 1.19 16
9 N -0.49 -5.02 2.81 -115.79 -0.32 -5.35 16
10 C 0.26 2.52 12.49 -89.78 -1.12 1.40 16
11 N -0.50 -6.26 11.27 -12.05 -0.14 -6.39 16
12 C 0.04 0.53 7.23 -84.70 -0.61 -0.08 16
13 C -0.07 -0.72 10.05 -39.61 -0.40 -1.12 16
14 C -0.13 -1.18 9.96 -39.98 -0.40 -1.58 16
15 C -0.10 -0.99 10.03 -39.52 -0.40 -1.38 16
16 C -0.11 -1.18 10.05 -39.50 -0.40 -1.57 16
17 C 0.05 0.57 6.87 -83.99 -0.58 -0.01 16
18 C -0.16 -2.66 3.73 -90.10 -0.34 -3.00 16
19 C 0.13 2.45 8.08 -8.51 -0.07 2.38 16
20 N -0.61 -15.24 3.58 -184.76 -0.66 -15.91 16
21 C -0.22 -6.10 10.75 -15.06 -0.16 -6.27 16
22 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16
23 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16
24 N -0.92 -27.15 11.51 55.49 0.64 -26.51 16
25 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16
26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
29 C 0.16 3.59 6.92 -8.51 -0.06 3.53 16
30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16
32 H 0.07 1.00 6.50 -51.93 -0.34 0.66 16
33 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16
34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16
35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
36 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16
37 H 0.11 0.90 8.09 -51.93 -0.42 0.48 16
38 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16
39 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16
40 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16
41 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16
42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16
43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
44 H 0.04 0.81 6.43 -51.93 -0.33 0.47 16
45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16
47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
48 H 0.07 1.83 7.10 -51.93 -0.37 1.46 16
LS Contribution 399.00 15.07 6.01 6.01
Total: -1.00 -35.37 399.00 -11.63 -47.00
By element:
Atomic # 1 Polarization: 11.05 SS G_CDS: -7.23 Total: 3.82 kcal
Atomic # 6 Polarization: 4.01 SS G_CDS: -4.72 Total: -0.71 kcal
Atomic # 7 Polarization: -63.13 SS G_CDS: -0.76 Total: -63.88 kcal
Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal
Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -35.37 -11.63 -47.00 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725257305.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.829 kcal
(2) G-P(sol) polarization free energy of solvation -35.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.460 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.002 kcal
(6) G-S(sol) free energy of system = (1) + (5) 94.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds