Wall clock time and date at job start Sat Apr 11 2020 06:44:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08999 * 109.47106 * 2 1
4 4 N 1.46505 * 109.47311 * 120.00141 * 2 1 3
5 5 C 1.34779 * 119.99767 * 275.00441 * 4 2 1
6 6 O 1.21287 * 120.00002 * 359.97438 * 5 4 2
7 7 C 1.50696 * 120.00008 * 180.02562 * 5 4 2
8 8 C 1.52998 * 109.47230 * 179.97438 * 7 5 4
9 9 N 1.46504 * 109.47335 * 179.97438 * 8 7 5
10 10 C 1.36041 * 126.34782 * 264.69306 * 9 8 7
11 11 N 1.30106 * 110.09572 * 179.87604 * 10 9 8
12 12 C 1.35782 * 109.64815 * 0.38446 * 11 10 9
13 13 C 1.39740 * 133.60758 * 179.76072 * 12 11 10
14 14 C 1.36594 * 119.89108 * 180.02562 * 13 12 11
15 15 C 1.38777 * 120.66768 * 359.97438 * 14 13 12
16 16 C 1.37853 * 120.45351 * 0.04877 * 15 14 13
17 17 C 1.38046 * 126.34734 * 84.99689 * 9 8 7
18 18 C 1.53002 * 109.47471 * 239.99907 * 2 1 3
19 19 C 1.53503 * 114.20285 * 60.00247 * 18 2 1
20 20 N 1.47066 * 87.98596 * 87.51823 * 19 18 2
21 21 C 1.36938 * 136.05640 * 207.07967 * 20 19 18
22 22 H 1.08004 * 119.99749 * 0.02562 * 21 20 19
23 23 C 1.38812 * 119.99984 * 180.02562 * 21 20 19
24 24 N 1.31618 * 119.99909 * 0.02562 * 23 21 20
25 25 Si 1.86803 * 119.99701 * 180.02562 * 23 21 20
26 26 H 1.48499 * 109.47078 * 60.00293 * 25 23 21
27 27 H 1.48498 * 109.46962 * 180.02562 * 25 23 21
28 28 H 1.48500 * 109.46870 * 300.00143 * 25 23 21
29 29 C 1.47060 * 87.88579 * 27.11915 * 20 19 18
30 30 H 1.09003 * 109.46727 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47339 * 299.99808 * 1 2 3
32 32 H 1.08998 * 109.47088 * 60.00094 * 1 2 3
33 33 H 0.96992 * 119.99996 * 94.99868 * 4 2 1
34 34 H 1.09004 * 109.46746 * 299.99656 * 7 5 4
35 35 H 1.08999 * 109.47576 * 59.99446 * 7 5 4
36 36 H 1.08994 * 109.47069 * 299.99798 * 8 7 5
37 37 H 1.09001 * 109.47054 * 60.00145 * 8 7 5
38 38 H 1.07999 * 124.95095 * 0.02562 * 10 9 8
39 39 H 1.08005 * 120.05024 * 359.97438 * 13 12 11
40 40 H 1.07998 * 119.66779 * 180.02562 * 14 13 12
41 41 H 1.08006 * 119.77625 * 180.02562 * 15 14 13
42 42 H 1.07995 * 120.15602 * 180.02562 * 16 15 14
43 43 H 1.08993 * 113.41318 * 286.80015 * 18 2 1
44 44 H 1.09000 * 113.46355 * 332.73775 * 19 18 2
45 45 H 1.09003 * 113.46309 * 202.30220 * 19 18 2
46 46 H 0.97003 * 119.99575 * 179.97438 * 24 23 21
47 47 H 1.09006 * 113.47077 * 87.66003 * 29 20 19
48 48 H 1.09003 * 113.47044 * 218.03568 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6907 1.1962
5 6 2.1470 -0.0183 2.3572
6 8 1.8589 1.1586 2.4115
7 6 2.6499 -0.7285 3.5875
8 6 2.7017 0.2547 4.7586
9 7 3.1901 -0.4359 5.9548
10 6 2.4258 -0.9932 6.9325
11 7 3.1854 -1.5254 7.8450
12 6 4.4902 -1.3382 7.5189
13 6 5.6964 -1.6910 8.1298
14 6 6.8819 -1.3522 7.5418
15 6 6.9031 -0.6593 6.3395
16 6 5.7256 -0.3005 5.7190
17 6 4.5111 -0.6366 6.3017
18 6 2.0400 -0.7213 -1.2492
19 6 1.5899 -0.0845 -2.5714
20 7 2.7723 0.7866 -2.4945
21 6 3.1105 2.0325 -2.9511
22 1 2.3996 2.6087 -3.5248
23 6 4.3669 2.5550 -2.6764
24 7 5.2333 1.8526 -1.9776
25 14 4.8278 4.2549 -3.2987
26 1 3.8906 5.2593 -2.7349
27 1 6.2139 4.5780 -2.8750
28 1 4.7456 4.2784 -4.7812
29 6 3.4321 -0.2697 -1.7123
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 2.2490 -1.6317 1.1526
34 1 1.9777 -1.5509 3.8325
35 1 3.6492 -1.1203 3.3979
36 1 3.3741 1.0767 4.5133
37 1 1.7025 0.6467 4.9483
38 1 1.3459 -0.9958 6.9478
39 1 5.6914 -2.2299 9.0658
40 1 7.8120 -1.6270 8.0168
41 1 7.8487 -0.3991 5.8870
42 1 5.7477 0.2383 4.7833
43 1 1.9119 -1.8028 -1.2075
44 1 0.6466 0.4562 -2.4938
45 1 1.6129 -0.7742 -3.4152
46 1 6.1114 2.2176 -1.7861
47 1 3.9458 -1.0087 -2.3273
48 1 4.0561 0.1135 -0.9049
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725257305.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:42
Heat of formation + Delta-G solvation = 73.210227 kcal
Electronic energy + Delta-G solvation = -29094.053021 eV
Core-core repulsion = 25150.722494 eV
Total energy + Delta-G solvation = -3943.330527 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-43.10655 -41.14696 -39.88956 -38.27157 -36.23565 -35.73431 -34.21879 -32.66515
-31.56867 -30.38439 -30.24410 -29.48140 -26.64452 -25.79861 -25.37779 -24.17910
-23.34214 -22.94243 -21.55743 -21.28308 -20.31579 -18.75628 -18.49088 -18.18549
-17.55531 -17.29237 -16.88944 -16.71554 -16.57718 -16.42499 -15.74909 -15.55061
-15.08332 -14.96724 -14.69807 -14.58275 -14.46636 -14.35834 -14.19945 -13.69806
-13.44164 -13.22711 -13.17325 -12.90467 -12.80440 -12.61085 -12.58212 -12.43223
-12.35506 -12.32187 -12.02674 -11.79813 -11.52778 -11.44006 -11.09478 -10.94934
-10.91156 -10.78823 -10.03504 -9.33733 -9.08404 -8.90130 -7.91863 -5.23252
0.02080 0.55897 1.41340 1.44859 1.50266 1.51345 1.63972 1.83938
2.30778 2.45718 2.92388 3.30357 3.35413 3.51197 3.57779 3.64872
3.65453 3.68191 3.90178 3.95008 4.11485 4.21510 4.32943 4.37350
4.43163 4.50559 4.52493 4.54202 4.70283 4.72244 4.75724 4.76957
4.82928 4.86568 4.86849 5.00681 5.21889 5.23944 5.24020 5.32396
5.47160 5.50281 5.54445 5.58316 5.59528 5.72242 5.95043 5.95315
6.18467 6.59788 6.88625 6.90651 7.30200 7.60561 8.61361 9.25282
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012206 B = 0.002516 C = 0.002236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2293.341491 B =11124.618063 C =12520.107814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.177 3.823
3 H 0.041 0.959
4 N -0.707 5.707
5 C 0.515 3.485
6 O -0.586 6.586
7 C -0.141 4.141
8 C 0.132 3.868
9 N -0.489 5.489
10 C 0.269 3.731
11 N -0.533 5.533
12 C 0.016 3.984
13 C -0.083 4.083
14 C -0.124 4.124
15 C -0.105 4.105
16 C -0.125 4.125
17 C 0.028 3.972
18 C -0.120 4.120
19 C 0.124 3.876
20 N -0.644 5.644
21 C -0.226 4.226
22 H 0.082 0.918
23 C -0.068 4.068
24 N -0.950 5.950
25 Si 0.973 3.027
26 H -0.280 1.280
27 H -0.295 1.295
28 H -0.275 1.275
29 C 0.155 3.845
30 H 0.085 0.915
31 H 0.046 0.954
32 H 0.063 0.937
33 H 0.415 0.585
34 H 0.133 0.867
35 H 0.102 0.898
36 H 0.078 0.922
37 H 0.120 0.880
38 H 0.253 0.747
39 H 0.137 0.863
40 H 0.157 0.843
41 H 0.150 0.850
42 H 0.122 0.878
43 H 0.119 0.881
44 H 0.055 0.945
45 H 0.053 0.947
46 H 0.245 0.755
47 H 0.018 0.982
48 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.349 -12.087 17.014 21.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.072 3.928
3 H 0.059 0.941
4 N -0.358 5.358
5 C 0.302 3.698
6 O -0.467 6.467
7 C -0.181 4.181
8 C 0.010 3.990
9 N -0.178 5.178
10 C -0.017 4.017
11 N -0.252 5.252
12 C -0.101 4.101
13 C -0.102 4.102
14 C -0.144 4.144
15 C -0.124 4.124
16 C -0.145 4.145
17 C -0.081 4.081
18 C -0.140 4.140
19 C -0.001 4.001
20 N -0.370 5.370
21 C -0.354 4.354
22 H 0.100 0.900
23 C -0.261 4.261
24 N -0.599 5.599
25 Si 0.801 3.199
26 H -0.206 1.206
27 H -0.221 1.221
28 H -0.201 1.201
29 C 0.029 3.971
30 H 0.104 0.896
31 H 0.065 0.935
32 H 0.082 0.918
33 H 0.252 0.748
34 H 0.151 0.849
35 H 0.120 0.880
36 H 0.097 0.903
37 H 0.138 0.862
38 H 0.269 0.731
39 H 0.155 0.845
40 H 0.174 0.826
41 H 0.168 0.832
42 H 0.140 0.860
43 H 0.137 0.863
44 H 0.073 0.927
45 H 0.071 0.929
46 H 0.054 0.946
47 H 0.036 0.964
48 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -5.679 -11.325 17.593 21.680
hybrid contribution 1.087 1.234 -1.522 2.241
sum -4.592 -10.091 16.071 19.524
Atomic orbital electron populations
1.22014 0.93444 1.03233 1.01719 1.20297 0.94500 0.95302 0.82736
0.94105 1.45903 1.66439 1.14590 1.08863 1.20812 0.76908 0.86718
0.85375 1.90738 1.52186 1.17902 1.85836 1.21900 1.05051 1.00064
0.91127 1.21485 1.02853 0.93526 0.81141 1.45569 1.04395 1.47247
1.20626 1.26171 1.00320 0.91910 0.83249 1.70444 1.01139 1.25295
1.28369 1.19468 0.92931 1.02831 0.94882 1.20297 0.89287 1.00247
1.00384 1.20989 0.98250 0.99242 0.95882 1.21268 0.97694 0.97841
0.95632 1.20254 0.89767 1.03375 1.01140 1.19169 0.86329 1.04256
0.98350 1.23062 0.97055 1.00067 0.93771 1.22642 0.91202 0.91571
0.94699 1.45969 1.14817 1.12808 1.63425 1.19251 0.97994 0.90696
1.27483 0.90013 1.25573 0.96562 1.02223 1.01739 1.69999 1.06590
1.38577 1.44774 0.85236 0.76666 0.79804 0.78193 1.20590 1.22071
1.20084 1.22085 0.93691 0.88135 0.93206 0.89639 0.93490 0.91804
0.74823 0.84939 0.87952 0.90304 0.86225 0.73143 0.84513 0.82578
0.83193 0.86015 0.86329 0.92658 0.92909 0.94575 0.96449 0.94878
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.76 9.29 71.98 0.67 -3.09 16
2 C 0.18 5.64 2.41 44.99 0.11 5.75 16
3 H 0.04 1.86 7.36 -2.39 -0.02 1.84 16
4 N -0.71 -17.58 5.08 -442.53 -2.25 -19.83 16
5 C 0.52 13.65 7.79 87.66 0.68 14.34 16
6 O -0.59 -21.42 15.65 -3.05 -0.05 -21.47 16
7 C -0.14 -2.40 6.02 29.85 0.18 -2.23 16
8 C 0.13 2.44 5.45 86.38 0.47 2.91 16
9 N -0.49 -9.59 2.81 -520.26 -1.46 -11.05 16
10 C 0.27 4.76 12.49 180.06 2.25 7.01 16
11 N -0.53 -12.94 11.27 -192.03 -2.16 -15.10 16
12 C 0.02 0.41 7.23 39.45 0.29 0.69 16
13 C -0.08 -1.72 10.05 22.25 0.22 -1.50 16
14 C -0.12 -2.11 9.96 22.01 0.22 -1.89 16
15 C -0.10 -1.93 10.03 22.31 0.22 -1.71 16
16 C -0.12 -2.76 10.05 22.32 0.22 -2.54 16
17 C 0.03 0.66 6.87 38.86 0.27 0.93 16
18 C -0.12 -3.84 3.73 -10.46 -0.04 -3.88 16
19 C 0.12 4.60 8.08 83.18 0.67 5.27 16
20 N -0.64 -32.58 3.58 -738.47 -2.65 -35.23 16
21 C -0.23 -12.85 10.75 84.03 0.90 -11.94 16
22 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16
23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16
24 N -0.95 -58.35 11.51 21.65 0.25 -58.10 16
25 Si 0.97 46.96 29.55 68.60 2.03 48.99 16
26 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16
27 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16
28 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16
29 C 0.15 7.02 6.92 83.18 0.58 7.60 16
30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16
32 H 0.06 1.71 6.50 -2.39 -0.02 1.69 16
33 H 0.41 7.20 8.60 -92.71 -0.80 6.40 16
34 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16
35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16
36 H 0.08 1.82 8.10 -2.39 -0.02 1.80 16
37 H 0.12 1.87 8.09 -2.39 -0.02 1.86 16
38 H 0.25 1.92 8.06 -2.91 -0.02 1.90 16
39 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16
40 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16
41 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16
42 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16
43 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16
44 H 0.06 1.92 6.43 -2.39 -0.02 1.91 16
45 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16
46 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16
47 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16
48 H 0.03 1.75 7.10 -2.39 -0.02 1.73 16
Total: -1.00 -82.33 399.00 2.27 -80.07
By element:
Atomic # 1 Polarization: 19.32 SS G_CDS: 0.17 Total: 19.49 kcal
Atomic # 6 Polarization: 3.86 SS G_CDS: 8.38 Total: 12.25 kcal
Atomic # 7 Polarization: -131.05 SS G_CDS: -8.27 Total: -139.32 kcal
Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal
Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal
Total: -82.33 2.27 -80.07 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725257305.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.279 kcal
(2) G-P(sol) polarization free energy of solvation -82.334 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.069 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.210 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds