Wall clock time and date at job start Sat Apr 11 2020 06:43:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08995 * 109.47103 * 2 1
4 4 C 1.50706 * 109.46854 * 239.99775 * 2 1 3
5 5 O 1.21278 * 119.99930 * 248.82811 * 4 2 1
6 6 N 1.34777 * 119.99790 * 68.82849 * 4 2 1
7 7 C 1.47019 * 125.65068 * 4.09423 * 6 4 2
8 8 C 1.54335 * 107.26709 * 178.84685 * 7 6 4
9 9 C 1.55154 * 103.01962 * 338.13804 * 8 7 6
10 10 H 1.08997 * 111.03875 * 277.21935 * 9 8 7
11 11 N 1.46500 * 111.00654 * 153.38060 * 9 8 7
12 12 C 1.46498 * 119.99833 * 307.80401 * 11 9 8
13 13 C 1.36934 * 120.00126 * 127.80344 * 11 9 8
14 14 H 1.07999 * 120.00050 * 23.95855 * 13 11 9
15 15 C 1.38812 * 119.99854 * 203.95852 * 13 11 9
16 16 N 1.31617 * 120.00493 * 12.75962 * 15 13 11
17 17 Si 1.86806 * 119.99874 * 192.75842 * 15 13 11
18 18 H 1.48501 * 109.46985 * 59.99942 * 17 15 13
19 19 H 1.48495 * 109.47060 * 180.02562 * 17 15 13
20 20 H 1.48497 * 109.47168 * 300.00014 * 17 15 13
21 21 C 1.47428 * 125.64469 * 184.39511 * 6 4 2
22 22 N 1.46492 * 109.46828 * 120.00004 * 2 1 3
23 23 C 1.36042 * 126.35190 * 60.04344 * 22 2 1
24 24 N 1.30108 * 110.09950 * 179.97438 * 23 22 2
25 25 C 1.35787 * 109.64330 * 0.02562 * 24 23 22
26 26 C 1.39741 * 133.59302 * 180.02562 * 25 24 23
27 27 C 1.36607 * 119.87882 * 179.97438 * 26 25 24
28 28 C 1.38771 * 120.67255 * 0.02562 * 27 26 25
29 29 C 1.37855 * 120.45290 * 359.97438 * 28 27 26
30 30 C 1.38054 * 126.34730 * 239.99762 * 22 2 1
31 31 H 1.09001 * 109.47478 * 187.89523 * 1 2 3
32 32 H 1.08996 * 109.47035 * 307.89993 * 1 2 3
33 33 H 1.09007 * 109.47035 * 67.89268 * 1 2 3
34 34 H 1.09009 * 109.88026 * 298.39033 * 7 6 4
35 35 H 1.08996 * 109.88559 * 59.55511 * 7 6 4
36 36 H 1.09001 * 110.85201 * 219.66894 * 8 7 6
37 37 H 1.08998 * 110.66517 * 96.51793 * 8 7 6
38 38 H 1.09002 * 109.47090 * 89.53070 * 12 11 9
39 39 H 1.08997 * 109.47483 * 209.53130 * 12 11 9
40 40 H 1.09001 * 109.47497 * 329.53702 * 12 11 9
41 41 H 0.96991 * 120.00709 * 180.02562 * 16 15 13
42 42 H 1.08999 * 110.36955 * 322.93076 * 21 6 4
43 43 H 1.09000 * 110.36407 * 85.14801 * 21 6 4
44 44 H 1.07998 * 124.94902 * 359.93268 * 23 22 2
45 45 H 1.07994 * 120.05870 * 0.20420 * 26 25 24
46 46 H 1.08000 * 119.65999 * 179.97438 * 27 26 25
47 47 H 1.08002 * 119.77539 * 179.97438 * 28 27 26
48 48 H 1.08004 * 120.15721 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7105 -1.2305
5 8 2.5921 -1.7813 -1.1264
6 7 1.8594 -0.1558 -2.4466
7 6 1.2777 1.1685 -2.7096
8 6 1.3090 1.3876 -4.2370
9 6 2.4168 0.4087 -4.7078
10 1 3.4061 0.8501 -4.5874
11 7 2.1956 -0.0067 -6.0952
12 6 0.8959 -0.5488 -6.4991
13 6 3.2036 0.1116 -7.0144
14 1 4.2328 0.1306 -6.6877
15 6 2.9026 0.2072 -8.3661
16 7 1.6647 0.4364 -8.7501
17 14 4.2544 0.0105 -9.6402
18 1 4.8711 -1.3335 -9.5042
19 1 3.6772 0.1554 -11.0007
20 1 5.2897 1.0539 -9.4286
21 6 2.2167 -0.7793 -3.7339
22 7 2.0183 -0.6906 1.1961
23 6 1.7712 -1.9840 1.5378
24 7 2.3594 -2.2695 2.6627
25 6 3.0241 -1.1774 3.1202
26 6 3.8052 -0.9289 4.2520
27 6 4.3564 0.3067 4.4406
28 6 4.1489 1.3226 3.5184
29 6 3.3819 1.1003 2.3946
30 6 2.8152 -0.1497 2.1852
31 1 -0.3634 -1.0179 0.1412
32 1 -0.3633 0.6313 0.8109
33 1 -0.3633 0.3868 -0.9522
34 1 0.2492 1.1997 -2.3496
35 1 1.8695 1.9383 -2.2143
36 1 1.5768 2.4168 -4.4759
37 1 0.3491 1.1269 -4.6827
38 1 0.2477 0.2653 -6.8236
39 1 1.0347 -1.2520 -7.3202
40 1 0.4380 -1.0628 -5.6539
41 1 1.4543 0.5029 -9.6946
42 1 3.1406 -1.3493 -3.6360
43 1 1.4089 -1.4240 -4.0803
44 1 1.1733 -2.6732 0.9599
45 1 3.9758 -1.7134 4.9744
46 1 4.9591 0.4950 5.3168
47 1 4.5912 2.2942 3.6821
48 1 3.2232 1.8946 1.6802
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000972662362.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:47
Heat of formation + Delta-G solvation = 63.132395 kcal
Electronic energy + Delta-G solvation = -29788.700045 eV
Core-core repulsion = 25844.932511 eV
Total energy + Delta-G solvation = -3943.767535 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.25812 -41.26339 -39.13189 -38.14267 -36.64873 -35.95691 -33.60062 -32.49366
-31.32304 -30.47815 -30.18745 -29.27085 -28.06550 -26.37805 -24.91243 -24.19682
-23.80255 -23.07208 -22.00982 -20.98858 -20.18952 -18.96790 -18.59504 -18.21530
-17.84138 -17.52617 -16.71596 -16.58193 -16.53096 -15.90106 -15.80939 -15.29312
-15.10210 -14.94699 -14.82128 -14.57877 -14.50859 -14.31389 -14.02792 -13.86902
-13.41966 -13.22595 -12.99875 -12.94402 -12.85880 -12.82765 -12.61468 -12.50507
-12.40418 -12.28707 -12.17073 -12.12700 -11.87055 -11.69720 -11.43060 -11.00879
-10.91277 -10.64269 -9.78503 -9.32611 -9.08568 -8.79467 -7.88115 -5.35808
0.01960 0.55073 1.27639 1.33853 1.45977 1.48377 1.54280 1.77964
1.99291 2.48962 2.93070 3.13125 3.27496 3.32708 3.51246 3.56911
3.59391 3.69600 3.89278 3.95901 4.07542 4.17345 4.21093 4.25719
4.41057 4.44746 4.49478 4.51783 4.52365 4.68222 4.69283 4.75040
4.84800 4.89247 4.97284 5.07520 5.10931 5.21368 5.22597 5.31037
5.40522 5.46357 5.58882 5.60402 5.61133 5.69688 5.98015 6.06327
6.30123 6.38583 6.85122 6.88739 7.11890 7.81850 8.25167 9.15749
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.021507 B = 0.002281 C = 0.002231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1301.589154 B =12273.643788 C =12546.429294
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.134 3.866
3 H 0.149 0.851
4 C 0.513 3.487
5 O -0.577 6.577
6 N -0.602 5.602
7 C 0.099 3.901
8 C -0.141 4.141
9 C 0.165 3.835
10 H 0.070 0.930
11 N -0.601 5.601
12 C 0.177 3.823
13 C -0.270 4.270
14 H 0.067 0.933
15 C -0.044 4.044
16 N -0.931 5.931
17 Si 0.965 3.035
18 H -0.283 1.283
19 H -0.293 1.293
20 H -0.275 1.275
21 C 0.098 3.902
22 N -0.476 5.476
23 C 0.283 3.717
24 N -0.538 5.538
25 C 0.010 3.990
26 C -0.087 4.087
27 C -0.123 4.123
28 C -0.100 4.100
29 C -0.118 4.118
30 C 0.030 3.970
31 H 0.067 0.933
32 H 0.097 0.903
33 H 0.104 0.896
34 H 0.105 0.895
35 H 0.098 0.902
36 H 0.085 0.915
37 H 0.070 0.930
38 H 0.009 0.991
39 H 0.019 0.981
40 H 0.028 0.972
41 H 0.250 0.750
42 H 0.048 0.952
43 H 0.062 0.938
44 H 0.217 0.783
45 H 0.131 0.869
46 H 0.158 0.842
47 H 0.163 0.837
48 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.133 6.945 23.802 24.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.027 3.973
3 H 0.166 0.834
4 C 0.300 3.700
5 O -0.456 6.456
6 N -0.335 5.335
7 C -0.022 4.022
8 C -0.180 4.180
9 C 0.056 3.944
10 H 0.089 0.911
11 N -0.322 5.322
12 C 0.033 3.967
13 C -0.400 4.400
14 H 0.084 0.916
15 C -0.240 4.240
16 N -0.577 5.577
17 Si 0.793 3.207
18 H -0.210 1.210
19 H -0.219 1.219
20 H -0.200 1.200
21 C -0.027 4.027
22 N -0.166 5.166
23 C -0.002 4.002
24 N -0.257 5.257
25 C -0.107 4.107
26 C -0.107 4.107
27 C -0.143 4.143
28 C -0.119 4.119
29 C -0.139 4.139
30 C -0.078 4.078
31 H 0.086 0.914
32 H 0.116 0.884
33 H 0.122 0.878
34 H 0.123 0.877
35 H 0.116 0.884
36 H 0.104 0.896
37 H 0.088 0.912
38 H 0.027 0.973
39 H 0.038 0.962
40 H 0.046 0.954
41 H 0.059 0.941
42 H 0.067 0.933
43 H 0.080 0.920
44 H 0.234 0.766
45 H 0.149 0.851
46 H 0.175 0.825
47 H 0.181 0.819
48 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -2.964 5.663 24.039 24.874
hybrid contribution 0.652 -0.091 -1.949 2.058
sum -2.312 5.571 22.089 22.898
Atomic orbital electron populations
1.22248 0.88266 1.04776 1.06127 1.21369 0.98626 0.97610 0.79650
0.83360 1.20792 0.79192 0.85651 0.84327 1.90756 1.44392 1.24266
1.86189 1.48397 1.60775 1.19712 1.04612 1.22472 1.00412 0.82903
0.96421 1.23039 1.00165 1.00965 0.93864 1.21523 0.97920 0.91830
0.83100 0.91150 1.43938 1.11564 1.72098 1.04642 1.20503 0.85845
0.95407 0.94970 1.19439 0.88018 1.44842 0.87741 0.91553 1.25705
0.98353 1.00518 0.99409 1.70173 1.19039 1.53468 1.14994 0.85388
0.78962 0.78114 0.78233 1.20977 1.21887 1.20025 1.22663 0.99526
0.97591 0.82953 1.45178 1.41783 1.11390 1.18266 1.25374 0.97892
0.84512 0.92460 1.70442 1.15347 1.27952 1.11995 1.19560 1.02813
0.90136 0.98185 1.20294 0.96609 0.98747 0.95049 1.21035 1.00449
0.91860 1.00980 1.21336 0.97264 1.00660 0.92650 1.20365 0.99946
0.93177 1.00407 1.19254 0.99371 0.97613 0.91559 0.91412 0.88372
0.87794 0.87744 0.88398 0.89623 0.91168 0.97271 0.96235 0.95411
0.94070 0.93337 0.91985 0.76646 0.85124 0.82453 0.81921 0.83726
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.77 9.26 71.98 0.67 -1.10 16
2 C 0.13 2.33 2.79 44.25 0.12 2.46 16
3 H 0.15 1.75 7.46 -2.39 -0.02 1.74 16
4 C 0.51 13.42 7.12 87.66 0.62 14.04 16
5 O -0.58 -20.77 15.55 -3.02 -0.05 -20.82 16
6 N -0.60 -15.20 3.32 -811.75 -2.70 -17.90 16
7 C 0.10 1.77 6.12 86.73 0.53 2.30 16
8 C -0.14 -3.77 6.50 31.79 0.21 -3.56 16
9 C 0.17 5.97 3.55 46.38 0.16 6.13 16
10 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16
11 N -0.60 -28.04 2.96 -695.03 -2.05 -30.09 16
12 C 0.18 8.15 7.62 127.77 0.97 9.13 16
13 C -0.27 -14.24 9.59 84.03 0.81 -13.44 16
14 H 0.07 3.44 7.86 -2.91 -0.02 3.42 16
15 C -0.04 -2.36 5.06 84.86 0.43 -1.93 16
16 N -0.93 -52.58 10.79 21.65 0.23 -52.34 16
17 Si 0.96 43.87 29.57 68.60 2.03 45.90 16
18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
19 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16
20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16
21 C 0.10 3.29 6.50 86.86 0.56 3.85 16
22 N -0.48 -11.11 2.51 -501.73 -1.26 -12.37 16
23 C 0.28 7.59 10.39 180.05 1.87 9.46 16
24 N -0.54 -16.61 11.27 -192.03 -2.16 -18.77 16
25 C 0.01 0.29 7.23 39.45 0.29 0.57 16
26 C -0.09 -1.93 10.05 22.25 0.22 -1.71 16
27 C -0.12 -1.93 9.96 22.02 0.22 -1.71 16
28 C -0.10 -1.41 10.03 22.31 0.22 -1.19 16
29 C -0.12 -2.08 9.89 22.32 0.22 -1.86 16
30 C 0.03 0.73 6.87 38.86 0.27 1.00 16
31 H 0.07 0.88 7.72 -2.39 -0.02 0.86 16
32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16
33 H 0.10 0.89 5.51 -2.38 -0.01 0.87 16
34 H 0.10 1.19 5.90 -2.38 -0.01 1.18 16
35 H 0.10 1.22 8.12 -2.39 -0.02 1.20 16
36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
37 H 0.07 2.04 6.99 -2.39 -0.02 2.02 16
38 H 0.01 0.44 7.57 -2.39 -0.02 0.43 16
39 H 0.02 0.99 7.02 -2.39 -0.02 0.97 16
40 H 0.03 1.09 6.40 -2.39 -0.02 1.07 16
41 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16
42 H 0.05 1.86 8.00 -2.39 -0.02 1.84 16
43 H 0.06 2.19 6.37 -2.39 -0.02 2.18 16
44 H 0.22 4.94 8.06 -2.91 -0.02 4.92 16
45 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16
46 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16
47 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16
48 H 0.15 1.71 7.76 -2.91 -0.02 1.69 16
Total: -1.00 -75.33 383.28 3.41 -71.92
By element:
Atomic # 1 Polarization: 11.06 SS G_CDS: 0.97 Total: 12.03 kcal
Atomic # 6 Polarization: 14.04 SS G_CDS: 8.40 Total: 22.44 kcal
Atomic # 7 Polarization: -123.53 SS G_CDS: -7.94 Total: -131.47 kcal
Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal
Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal
Total: -75.33 3.41 -71.92 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972662362.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.050 kcal
(2) G-P(sol) polarization free energy of solvation -75.327 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.723 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.917 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.132 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds