Wall clock time and date at job start Sat Apr 11 2020 06:44:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08999 * 109.46946 * 2 1
4 4 N 1.46506 * 109.47298 * 239.99686 * 2 1 3
5 5 C 1.34774 * 119.99465 * 84.99859 * 4 2 1
6 6 O 1.21547 * 120.00716 * 0.02562 * 5 4 2
7 7 C 1.47964 * 119.99644 * 179.97438 * 5 4 2
8 8 C 1.39791 * 119.31632 * 179.97438 * 7 5 4
9 9 C 1.37016 * 119.45297 * 180.02562 * 8 7 5
10 10 C 1.39775 * 118.23906 * 359.97438 * 9 8 7
11 11 C 1.46143 * 134.24850 * 179.97438 * 10 9 8
12 12 C 1.34434 * 106.92049 * 180.02562 * 11 10 9
13 13 N 1.36728 * 110.00283 * 0.02562 * 12 11 10
14 14 H 0.97002 * 124.99668 * 179.97438 * 13 12 11
15 15 C 1.37550 * 110.00347 * 0.02562 * 13 12 11
16 16 N 1.32170 * 133.20350 * 180.32216 * 15 13 12
17 17 C 1.53004 * 109.47167 * 119.99667 * 2 1 3
18 18 H 1.09001 * 109.49815 * 180.02562 * 17 2 1
19 19 C 1.53036 * 109.52225 * 300.14664 * 17 2 1
20 20 C 1.53045 * 109.53598 * 181.33322 * 19 17 2
21 21 C 1.53630 * 109.24023 * 298.51421 * 20 19 17
22 22 N 1.46921 * 108.54247 * 54.85343 * 21 20 19
23 23 C 1.36937 * 120.62612 * 126.37046 * 22 21 20
24 24 H 1.07998 * 120.00002 * 207.52827 * 23 22 21
25 25 C 1.38816 * 120.00353 * 27.52170 * 23 22 21
26 26 N 1.31623 * 119.99605 * 25.85418 * 25 23 22
27 27 Si 1.86798 * 120.00303 * 205.57558 * 25 23 22
28 28 H 1.48496 * 109.47254 * 0.02562 * 27 25 23
29 29 H 1.48497 * 109.46775 * 120.00140 * 27 25 23
30 30 H 1.48502 * 109.47217 * 239.99955 * 27 25 23
31 31 C 1.46924 * 118.74129 * 306.09229 * 22 21 20
32 32 H 1.08998 * 109.47260 * 60.00255 * 1 2 3
33 33 H 1.09006 * 109.46566 * 179.97438 * 1 2 3
34 34 H 1.08991 * 109.47550 * 299.99860 * 1 2 3
35 35 H 0.96990 * 120.00162 * 264.99587 * 4 2 1
36 36 H 1.07994 * 120.27405 * 359.97438 * 8 7 5
37 37 H 1.07997 * 120.87722 * 180.02562 * 9 8 7
38 38 H 1.08003 * 126.54358 * 359.97438 * 11 10 9
39 39 H 1.07998 * 125.00267 * 179.97438 * 12 11 10
40 40 H 1.09000 * 109.46431 * 301.34923 * 19 17 2
41 41 H 1.08999 * 109.46106 * 61.31716 * 19 17 2
42 42 H 1.08999 * 109.49721 * 58.58669 * 20 19 17
43 43 H 1.09001 * 109.49907 * 178.65451 * 20 19 17
44 44 H 1.08995 * 109.73693 * 295.11306 * 21 20 19
45 45 H 1.08997 * 109.65955 * 174.54978 * 21 20 19
46 46 H 0.96999 * 119.99925 * 4.04910 * 26 25 23
47 47 H 1.09005 * 109.58307 * 173.64915 * 31 22 21
48 48 H 1.08993 * 109.58946 * 294.07467 * 31 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6907 -1.1962
5 6 2.1470 -0.0183 -2.3571
6 8 1.8584 1.1611 -2.4117
7 6 2.6408 -0.7157 -3.5650
8 6 2.7683 -0.0047 -4.7618
9 6 3.2247 -0.6478 -5.8823
10 6 3.5483 -2.0038 -5.7808
11 6 4.0497 -3.0055 -6.7194
12 6 4.1692 -4.1570 -6.0359
13 7 3.7843 -3.9720 -4.7370
14 1 3.7840 -4.6602 -4.0535
15 6 3.3965 -2.6666 -4.5426
16 7 2.9568 -2.0008 -3.4889
17 6 2.0400 -0.7212 1.2493
18 1 3.1300 -0.7210 1.2500
19 6 1.5275 -0.0027 2.4996
20 6 2.0647 -0.7042 3.7493
21 6 1.5498 -2.1514 3.7783
22 7 1.9188 -2.8040 2.5147
23 6 2.6073 -3.9877 2.5160
24 1 3.2476 -4.2408 1.6840
25 6 2.4822 -4.8623 3.5867
26 7 1.3917 -4.8487 4.3236
27 14 3.8583 -6.0636 3.9771
28 1 4.9644 -5.8830 3.0029
29 1 4.3626 -5.8094 5.3505
30 1 3.3422 -7.4533 3.8887
31 6 1.5297 -2.1656 1.2499
32 1 -0.3634 0.5138 -0.8900
33 1 -0.3633 -1.0278 -0.0005
34 1 -0.3634 0.5138 0.8899
35 1 2.2491 -1.6317 -1.1526
36 1 2.5083 1.0427 -4.8032
37 1 3.3325 -0.1208 -6.8187
38 1 4.2795 -2.8506 -7.7633
39 1 4.5172 -5.0910 -6.4517
40 1 1.8688 1.0324 2.4893
41 1 0.4378 -0.0256 2.5105
42 1 3.1544 -0.7036 3.7267
43 1 1.7188 -0.1779 4.6389
44 1 0.4654 -2.1541 3.8880
45 1 2.0048 -2.6858 4.6122
46 1 0.6515 -4.2695 4.0838
47 1 1.9715 -2.7096 0.4150
48 1 0.4437 -2.1695 1.1575
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001025447094.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:37
Heat of formation + Delta-G solvation = 50.367364 kcal
Electronic energy + Delta-G solvation = -29829.115014 eV
Core-core repulsion = 25884.793946 eV
Total energy + Delta-G solvation = -3944.321068 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.81753 -39.99820 -38.40413 -37.46172 -35.35109 -33.52364 -32.99746 -31.13005
-30.39794 -30.35724 -29.46949 -28.07414 -25.17992 -24.95468 -23.85607 -22.98737
-22.21513 -21.11763 -20.76934 -20.17147 -18.81331 -18.58679 -17.90089 -17.25073
-16.64288 -15.86242 -15.54193 -15.06051 -14.87331 -14.74642 -14.42647 -14.30114
-13.85746 -13.62569 -13.60846 -13.60065 -13.37914 -13.33156 -12.82048 -12.63381
-12.33313 -12.25517 -12.13197 -11.96873 -11.58960 -11.00317 -10.82642 -10.77699
-10.55712 -10.43918 -10.26775 -10.16732 -10.09866 -9.90368 -9.81474 -9.53854
-9.25689 -8.95326 -8.72465 -8.39234 -8.34595 -6.85620 -6.09199 -3.22062
0.40333 1.06355 2.26877 2.43339 2.82845 3.20675 3.48612 3.51906
3.64998 3.80090 4.11340 4.36718 4.43875 4.56965 4.75830 4.89110
4.98544 5.04033 5.18543 5.32475 5.34679 5.40044 5.43128 5.49594
5.53264 5.63772 5.65390 5.79788 5.93112 5.96360 6.07956 6.08460
6.15221 6.16697 6.17531 6.27810 6.40804 6.50139 6.54372 6.61697
6.63468 6.71393 6.73628 6.86635 6.92887 7.12018 7.22150 7.50175
7.75652 8.00666 8.25865 8.57639 9.12112 9.85113 10.30524 11.21038
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.010249 B = 0.003247 C = 0.002545
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2731.417907 B = 8622.459530 C =11000.592603
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.147 3.853
3 H 0.084 0.916
4 N -0.699 5.699
5 C 0.572 3.428
6 O -0.538 6.538
7 C 0.120 3.880
8 C -0.142 4.142
9 C -0.039 4.039
10 C -0.133 4.133
11 C -0.205 4.205
12 C 0.075 3.925
13 N -0.579 5.579
14 H 0.424 0.576
15 C 0.281 3.719
16 N -0.465 5.465
17 C -0.112 4.112
18 H 0.073 0.927
19 C -0.101 4.101
20 C -0.137 4.137
21 C 0.149 3.851
22 N -0.598 5.598
23 C -0.350 4.350
24 H 0.055 0.945
25 C -0.024 4.024
26 N -0.916 5.916
27 Si 1.068 2.932
28 H -0.293 1.293
29 H -0.290 1.290
30 H -0.294 1.294
31 C 0.154 3.846
32 H 0.054 0.946
33 H 0.063 0.937
34 H 0.068 0.932
35 H 0.412 0.588
36 H 0.150 0.850
37 H 0.141 0.859
38 H 0.153 0.847
39 H 0.181 0.819
40 H 0.050 0.950
41 H 0.060 0.940
42 H 0.057 0.943
43 H 0.051 0.949
44 H 0.016 0.984
45 H 0.078 0.922
46 H 0.270 0.730
47 H 0.050 0.950
48 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.603 6.318 -20.175 21.446
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.043 3.957
3 H 0.102 0.898
4 N -0.350 5.350
5 C 0.356 3.644
6 O -0.415 6.415
7 C -0.027 4.027
8 C -0.164 4.164
9 C -0.066 4.066
10 C -0.141 4.141
11 C -0.230 4.230
12 C -0.052 4.052
13 N -0.185 5.185
14 H 0.263 0.737
15 C 0.046 3.954
16 N -0.180 5.180
17 C -0.133 4.133
18 H 0.091 0.909
19 C -0.139 4.139
20 C -0.176 4.176
21 C 0.023 3.977
22 N -0.321 5.321
23 C -0.479 4.479
24 H 0.072 0.928
25 C -0.226 4.226
26 N -0.556 5.556
27 Si 0.899 3.101
28 H -0.219 1.219
29 H -0.217 1.217
30 H -0.222 1.222
31 C 0.027 3.973
32 H 0.073 0.927
33 H 0.082 0.918
34 H 0.087 0.913
35 H 0.250 0.750
36 H 0.168 0.832
37 H 0.159 0.841
38 H 0.171 0.829
39 H 0.198 0.802
40 H 0.068 0.932
41 H 0.079 0.921
42 H 0.076 0.924
43 H 0.070 0.930
44 H 0.034 0.966
45 H 0.096 0.904
46 H 0.081 0.919
47 H 0.068 0.932
48 H 0.040 0.960
Dipole moment (debyes) X Y Z Total
from point charges 3.837 5.351 -18.244 19.395
hybrid contribution -0.235 0.664 -1.574 1.725
sum 3.602 6.015 -19.818 21.022
Atomic orbital electron populations
1.22260 0.95304 1.02693 1.02034 1.21085 0.94259 0.96823 0.83535
0.89763 1.46097 1.64860 1.15086 1.08972 1.17795 0.77934 0.85995
0.82629 1.90768 1.51105 1.14960 1.84697 1.20840 0.99109 0.88222
0.94569 1.21532 1.01024 1.02047 0.91843 1.20666 0.95226 0.91873
0.98790 1.20096 1.04406 0.94836 0.94770 1.21661 1.10266 0.91455
0.99633 1.22005 1.00379 1.00301 0.82562 1.41652 1.57124 1.08397
1.11335 0.73717 1.18254 1.00256 0.86276 0.90616 1.66263 1.12772
1.08401 1.30610 1.21930 1.00898 0.97992 0.92492 0.90885 1.21433
1.00298 0.97675 0.94477 1.22135 1.00762 0.98691 0.96033 1.21048
0.96205 0.90010 0.90388 1.44100 1.65920 1.22900 0.99220 1.19987
1.22365 0.96281 1.09248 0.92751 1.25812 1.01003 0.98750 0.97055
1.70725 1.03349 1.38043 1.43518 0.83482 0.75105 0.75647 0.75893
1.21923 1.21668 1.22154 1.20955 0.96268 0.90094 0.89952 0.92681
0.91758 0.91274 0.75020 0.83230 0.84119 0.82943 0.80211 0.93176
0.92124 0.92423 0.93019 0.96572 0.90395 0.91928 0.93199 0.95967
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.39 8.79 37.16 0.33 -2.06 16
2 C 0.15 2.27 2.41 -67.93 -0.16 2.11 16
3 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16
4 N -0.70 -10.81 4.99 -54.71 -0.27 -11.08 16
5 C 0.57 8.99 7.77 -12.28 -0.10 8.89 16
6 O -0.54 -9.38 15.94 5.32 0.08 -9.29 16
7 C 0.12 1.71 6.74 -82.99 -0.56 1.15 16
8 C -0.14 -1.68 9.55 -39.44 -0.38 -2.06 16
9 C -0.04 -0.39 10.17 -39.45 -0.40 -0.79 16
10 C -0.13 -1.45 6.39 -105.00 -0.67 -2.12 16
11 C -0.20 -1.60 11.08 -37.76 -0.42 -2.02 16
12 C 0.08 0.50 11.81 -16.71 -0.20 0.31 16
13 N -0.58 -5.31 6.05 -12.09 -0.07 -5.39 16
14 H 0.42 3.20 8.96 -40.82 -0.37 2.83 16
15 C 0.28 3.50 8.43 -155.80 -1.31 2.19 16
16 N -0.46 -6.64 9.53 -8.82 -0.08 -6.72 16
17 C -0.11 -1.94 2.33 -90.50 -0.21 -2.15 16
18 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16
19 C -0.10 -1.66 4.77 -26.69 -0.13 -1.79 16
20 C -0.14 -2.57 6.10 -26.38 -0.16 -2.73 16
21 C 0.15 3.47 4.72 -3.49 -0.02 3.45 16
22 N -0.60 -14.74 2.85 -172.06 -0.49 -15.23 16
23 C -0.35 -9.66 9.49 -15.06 -0.14 -9.80 16
24 H 0.05 1.52 7.95 -52.49 -0.42 1.10 16
25 C -0.02 -0.68 4.66 -17.43 -0.08 -0.76 16
26 N -0.92 -27.26 12.46 55.49 0.69 -26.57 16
27 Si 1.07 25.21 29.99 -169.99 -5.10 20.11 16
28 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
30 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
31 C 0.15 3.15 5.29 -3.71 -0.02 3.13 16
32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
33 H 0.06 0.97 6.32 -51.93 -0.33 0.65 16
34 H 0.07 0.93 6.46 -51.93 -0.34 0.59 16
35 H 0.41 6.50 6.27 -40.82 -0.26 6.25 16
36 H 0.15 1.61 7.60 -52.49 -0.40 1.21 16
37 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16
38 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16
39 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16
40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
41 H 0.06 0.97 6.50 -51.93 -0.34 0.63 16
42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
44 H 0.02 0.38 7.87 -51.93 -0.41 -0.02 16
45 H 0.08 2.04 6.31 -51.93 -0.33 1.71 16
46 H 0.27 8.09 6.69 -40.82 -0.27 7.81 16
47 H 0.05 1.03 6.52 -51.93 -0.34 0.69 16
48 H 0.02 0.46 6.18 -51.93 -0.32 0.14 16
LS Contribution 379.71 15.07 5.72 5.72
Total: -1.00 -33.53 379.71 -10.83 -44.35
By element:
Atomic # 1 Polarization: 15.83 SS G_CDS: -6.68 Total: 9.15 kcal
Atomic # 6 Polarization: -0.43 SS G_CDS: -4.63 Total: -5.06 kcal
Atomic # 7 Polarization: -64.76 SS G_CDS: -0.23 Total: -64.98 kcal
Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.29 kcal
Atomic # 14 Polarization: 25.21 SS G_CDS: -5.10 Total: 20.11 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -33.53 -10.83 -44.35 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025447094.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.722 kcal
(2) G-P(sol) polarization free energy of solvation -33.527 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.195 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.367 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds