Wall clock time and date at job start Sat Apr 11 2020 06:44:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08999 * 109.46946 * 2 1
4 4 N 1.46506 * 109.47298 * 239.99686 * 2 1 3
5 5 C 1.34774 * 119.99465 * 84.99859 * 4 2 1
6 6 O 1.21547 * 120.00716 * 0.02562 * 5 4 2
7 7 C 1.47964 * 119.99644 * 179.97438 * 5 4 2
8 8 C 1.39791 * 119.31632 * 179.97438 * 7 5 4
9 9 C 1.37016 * 119.45297 * 180.02562 * 8 7 5
10 10 C 1.39775 * 118.23906 * 359.97438 * 9 8 7
11 11 C 1.46143 * 134.24850 * 179.97438 * 10 9 8
12 12 C 1.34434 * 106.92049 * 180.02562 * 11 10 9
13 13 N 1.36728 * 110.00283 * 0.02562 * 12 11 10
14 14 H 0.97002 * 124.99668 * 179.97438 * 13 12 11
15 15 C 1.37550 * 110.00347 * 0.02562 * 13 12 11
16 16 N 1.32170 * 133.20350 * 180.32216 * 15 13 12
17 17 C 1.53004 * 109.47167 * 119.99667 * 2 1 3
18 18 H 1.09001 * 109.49815 * 180.02562 * 17 2 1
19 19 C 1.53036 * 109.52225 * 300.14664 * 17 2 1
20 20 C 1.53045 * 109.53598 * 181.33322 * 19 17 2
21 21 C 1.53630 * 109.24023 * 298.51421 * 20 19 17
22 22 N 1.46921 * 108.54247 * 54.85343 * 21 20 19
23 23 C 1.36937 * 120.62612 * 126.37046 * 22 21 20
24 24 H 1.07998 * 120.00002 * 207.52827 * 23 22 21
25 25 C 1.38816 * 120.00353 * 27.52170 * 23 22 21
26 26 N 1.31623 * 119.99605 * 25.85418 * 25 23 22
27 27 Si 1.86798 * 120.00303 * 205.57558 * 25 23 22
28 28 H 1.48496 * 109.47254 * 0.02562 * 27 25 23
29 29 H 1.48497 * 109.46775 * 120.00140 * 27 25 23
30 30 H 1.48502 * 109.47217 * 239.99955 * 27 25 23
31 31 C 1.46924 * 118.74129 * 306.09229 * 22 21 20
32 32 H 1.08998 * 109.47260 * 60.00255 * 1 2 3
33 33 H 1.09006 * 109.46566 * 179.97438 * 1 2 3
34 34 H 1.08991 * 109.47550 * 299.99860 * 1 2 3
35 35 H 0.96990 * 120.00162 * 264.99587 * 4 2 1
36 36 H 1.07994 * 120.27405 * 359.97438 * 8 7 5
37 37 H 1.07997 * 120.87722 * 180.02562 * 9 8 7
38 38 H 1.08003 * 126.54358 * 359.97438 * 11 10 9
39 39 H 1.07998 * 125.00267 * 179.97438 * 12 11 10
40 40 H 1.09000 * 109.46431 * 301.34923 * 19 17 2
41 41 H 1.08999 * 109.46106 * 61.31716 * 19 17 2
42 42 H 1.08999 * 109.49721 * 58.58669 * 20 19 17
43 43 H 1.09001 * 109.49907 * 178.65451 * 20 19 17
44 44 H 1.08995 * 109.73693 * 295.11306 * 21 20 19
45 45 H 1.08997 * 109.65955 * 174.54978 * 21 20 19
46 46 H 0.96999 * 119.99925 * 4.04910 * 26 25 23
47 47 H 1.09005 * 109.58307 * 173.64915 * 31 22 21
48 48 H 1.08993 * 109.58946 * 294.07467 * 31 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6907 -1.1962
5 6 2.1470 -0.0183 -2.3571
6 8 1.8584 1.1611 -2.4117
7 6 2.6408 -0.7157 -3.5650
8 6 2.7683 -0.0047 -4.7618
9 6 3.2247 -0.6478 -5.8823
10 6 3.5483 -2.0038 -5.7808
11 6 4.0497 -3.0055 -6.7194
12 6 4.1692 -4.1570 -6.0359
13 7 3.7843 -3.9720 -4.7370
14 1 3.7840 -4.6602 -4.0535
15 6 3.3965 -2.6666 -4.5426
16 7 2.9568 -2.0008 -3.4889
17 6 2.0400 -0.7212 1.2493
18 1 3.1300 -0.7210 1.2500
19 6 1.5275 -0.0027 2.4996
20 6 2.0647 -0.7042 3.7493
21 6 1.5498 -2.1514 3.7783
22 7 1.9188 -2.8040 2.5147
23 6 2.6073 -3.9877 2.5160
24 1 3.2476 -4.2408 1.6840
25 6 2.4822 -4.8623 3.5867
26 7 1.3917 -4.8487 4.3236
27 14 3.8583 -6.0636 3.9771
28 1 4.9644 -5.8830 3.0029
29 1 4.3626 -5.8094 5.3505
30 1 3.3422 -7.4533 3.8887
31 6 1.5297 -2.1656 1.2499
32 1 -0.3634 0.5138 -0.8900
33 1 -0.3633 -1.0278 -0.0005
34 1 -0.3634 0.5138 0.8899
35 1 2.2491 -1.6317 -1.1526
36 1 2.5083 1.0427 -4.8032
37 1 3.3325 -0.1208 -6.8187
38 1 4.2795 -2.8506 -7.7633
39 1 4.5172 -5.0910 -6.4517
40 1 1.8688 1.0324 2.4893
41 1 0.4378 -0.0256 2.5105
42 1 3.1544 -0.7036 3.7267
43 1 1.7188 -0.1779 4.6389
44 1 0.4654 -2.1541 3.8880
45 1 2.0048 -2.6858 4.6122
46 1 0.6515 -4.2695 4.0838
47 1 1.9715 -2.7096 0.4150
48 1 0.4437 -2.1695 1.1575
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001025447094.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:44:36
Heat of formation + Delta-G solvation = 29.608898 kcal
Electronic energy + Delta-G solvation = -29830.015169 eV
Core-core repulsion = 25884.793946 eV
Total energy + Delta-G solvation = -3945.221223 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.59584 -41.19936 -39.79345 -38.48439 -36.91468 -34.92886 -34.11480 -32.52736
-32.24506 -31.17580 -30.35929 -29.46456 -27.08573 -26.06310 -25.02476 -24.14091
-23.77689 -22.27589 -21.71017 -21.42727 -20.26912 -19.45484 -19.40634 -18.84435
-17.43359 -17.07208 -16.53865 -16.44321 -16.22174 -15.86947 -15.70640 -15.67674
-15.47085 -15.33301 -14.97367 -14.54967 -14.41217 -14.22654 -14.11625 -13.93370
-13.74062 -13.59174 -13.16157 -13.04239 -12.93974 -12.76599 -12.66430 -12.14497
-11.93105 -11.91360 -11.77548 -11.66126 -11.57376 -11.52095 -11.33240 -11.10437
-10.53607 -10.44579 -10.19738 -9.59372 -9.05819 -8.91034 -8.27703 -5.39525
-0.47785 0.23656 1.50173 1.55661 1.63687 1.70218 1.79662 1.89323
2.07561 2.62928 2.85368 3.19397 3.22039 3.44306 3.60761 3.79000
3.81663 3.85732 3.91474 3.96545 4.12018 4.22188 4.29900 4.34177
4.39612 4.51316 4.54793 4.66638 4.69409 4.71693 4.74963 4.85866
4.87299 4.92338 5.01962 5.08631 5.13561 5.15158 5.21776 5.27380
5.34857 5.41945 5.42507 5.49469 5.55308 5.82565 5.88672 6.17799
6.38547 6.42287 6.79560 7.05191 7.06380 7.77752 8.22498 8.98846
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.010249 B = 0.003247 C = 0.002545
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2731.417907 B = 8622.459530 C =11000.592603
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.155 3.845
3 H 0.089 0.911
4 N -0.701 5.701
5 C 0.572 3.428
6 O -0.561 6.561
7 C 0.088 3.912
8 C -0.148 4.148
9 C -0.034 4.034
10 C -0.140 4.140
11 C -0.214 4.214
12 C 0.092 3.908
13 N -0.580 5.580
14 H 0.429 0.571
15 C 0.246 3.754
16 N -0.489 5.489
17 C -0.097 4.097
18 H 0.059 0.941
19 C -0.097 4.097
20 C -0.127 4.127
21 C 0.153 3.847
22 N -0.616 5.616
23 C -0.355 4.355
24 H 0.046 0.954
25 C -0.074 4.074
26 N -0.941 5.941
27 Si 1.117 2.883
28 H -0.276 1.276
29 H -0.287 1.287
30 H -0.290 1.290
31 C 0.156 3.844
32 H 0.054 0.946
33 H 0.053 0.947
34 H 0.084 0.916
35 H 0.409 0.591
36 H 0.155 0.845
37 H 0.177 0.823
38 H 0.183 0.817
39 H 0.226 0.774
40 H 0.081 0.919
41 H 0.069 0.931
42 H 0.049 0.951
43 H 0.077 0.923
44 H 0.007 0.993
45 H 0.042 0.958
46 H 0.255 0.745
47 H 0.040 0.960
48 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.769 6.572 -22.462 23.885
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.050 3.950
3 H 0.107 0.893
4 N -0.352 5.352
5 C 0.358 3.642
6 O -0.440 6.440
7 C -0.058 4.058
8 C -0.170 4.170
9 C -0.060 4.060
10 C -0.148 4.148
11 C -0.238 4.238
12 C -0.035 4.035
13 N -0.187 5.187
14 H 0.268 0.732
15 C 0.010 3.990
16 N -0.205 5.205
17 C -0.117 4.117
18 H 0.078 0.922
19 C -0.135 4.135
20 C -0.166 4.166
21 C 0.027 3.973
22 N -0.341 5.341
23 C -0.485 4.485
24 H 0.064 0.936
25 C -0.270 4.270
26 N -0.583 5.583
27 Si 0.942 3.058
28 H -0.201 1.201
29 H -0.213 1.213
30 H -0.217 1.217
31 C 0.030 3.970
32 H 0.073 0.927
33 H 0.072 0.928
34 H 0.103 0.897
35 H 0.246 0.754
36 H 0.173 0.827
37 H 0.195 0.805
38 H 0.200 0.800
39 H 0.243 0.757
40 H 0.100 0.900
41 H 0.088 0.912
42 H 0.068 0.932
43 H 0.095 0.905
44 H 0.025 0.975
45 H 0.060 0.940
46 H 0.065 0.935
47 H 0.059 0.941
48 H 0.040 0.960
Dipole moment (debyes) X Y Z Total
from point charges 4.999 5.629 -20.551 21.887
hybrid contribution -0.577 0.490 -0.998 1.252
sum 4.422 6.119 -21.549 22.833
Atomic orbital electron populations
1.22203 0.94415 1.02191 1.02792 1.20998 0.94814 0.96524 0.82656
0.89340 1.46115 1.64992 1.14881 1.09185 1.18070 0.77283 0.85790
0.83029 1.90732 1.52291 1.15787 1.85168 1.20682 1.01621 0.88790
0.94711 1.21651 1.01336 1.02290 0.91765 1.21047 0.93757 0.91800
0.99420 1.20580 1.03633 0.95589 0.94967 1.22081 1.10327 0.90688
1.00731 1.22855 0.97816 1.01779 0.81077 1.41885 1.56785 1.07472
1.12588 0.73175 1.18684 1.01470 0.87792 0.91071 1.66117 1.13573
1.08714 1.32070 1.21713 0.99917 0.95930 0.94185 0.92227 1.21438
1.00796 0.98798 0.92428 1.22007 1.00155 0.95889 0.98527 1.20952
0.95355 0.92323 0.88655 1.44338 1.66130 1.22635 1.00972 1.20208
1.22026 0.97308 1.08977 0.93581 1.27128 1.02202 1.00519 0.97184
1.70847 1.03917 1.39039 1.44533 0.82832 0.73029 0.73843 0.76106
1.20103 1.21337 1.21669 1.21019 0.96172 0.91821 0.87947 0.92671
0.92815 0.89734 0.75405 0.82728 0.80548 0.79977 0.75735 0.90036
0.91217 0.93236 0.90464 0.97546 0.93962 0.93491 0.94105 0.95970
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.46 8.79 71.98 0.63 -3.83 16
2 C 0.15 4.69 2.41 44.99 0.11 4.80 16
3 H 0.09 2.68 7.58 -2.39 -0.02 2.66 16
4 N -0.70 -22.24 4.99 -445.28 -2.22 -24.46 16
5 C 0.57 18.47 7.77 86.82 0.67 19.15 16
6 O -0.56 -19.80 15.94 -3.86 -0.06 -19.86 16
7 C 0.09 2.58 6.74 41.99 0.28 2.86 16
8 C -0.15 -3.48 9.55 22.36 0.21 -3.26 16
9 C -0.03 -0.63 10.17 22.35 0.23 -0.40 16
10 C -0.14 -2.79 6.39 -20.11 -0.13 -2.92 16
11 C -0.21 -2.65 11.08 23.45 0.26 -2.39 16
12 C 0.09 0.92 11.81 83.06 0.98 1.91 16
13 N -0.58 -9.85 6.05 -192.18 -1.16 -11.01 16
14 H 0.43 6.11 8.96 -92.71 -0.83 5.28 16
15 C 0.25 6.03 8.43 134.15 1.13 7.16 16
16 N -0.49 -14.39 9.53 -181.82 -1.73 -16.12 16
17 C -0.10 -3.30 2.33 -10.72 -0.02 -3.33 16
18 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16
19 C -0.10 -3.01 4.77 30.62 0.15 -2.86 16
20 C -0.13 -4.64 6.10 30.82 0.19 -4.45 16
21 C 0.15 7.25 4.72 86.51 0.41 7.66 16
22 N -0.62 -31.18 2.85 -698.28 -1.99 -33.16 16
23 C -0.36 -20.14 9.49 84.03 0.80 -19.34 16
24 H 0.05 2.64 7.95 -2.91 -0.02 2.61 16
25 C -0.07 -4.23 4.66 84.86 0.40 -3.83 16
26 N -0.94 -57.65 12.46 21.65 0.27 -57.38 16
27 Si 1.12 51.46 29.99 68.60 2.06 53.52 16
28 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16
29 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16
30 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16
31 C 0.16 6.51 5.29 86.36 0.46 6.96 16
32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
33 H 0.05 1.62 6.32 -2.38 -0.02 1.61 16
34 H 0.08 2.11 6.46 -2.39 -0.02 2.10 16
35 H 0.41 13.51 6.27 -92.72 -0.58 12.93 16
36 H 0.16 3.33 7.60 -2.91 -0.02 3.31 16
37 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16
38 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16
39 H 0.23 0.07 8.06 -2.91 -0.02 0.04 16
40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
41 H 0.07 2.08 6.50 -2.39 -0.02 2.06 16
42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16
43 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16
44 H 0.01 0.32 7.87 -2.39 -0.02 0.30 16
45 H 0.04 2.28 6.31 -2.39 -0.02 2.27 16
46 H 0.26 15.93 6.69 -92.71 -0.62 15.31 16
47 H 0.04 1.75 6.52 -2.38 -0.02 1.73 16
48 H 0.02 0.94 6.18 -2.39 -0.01 0.93 16
Total: -1.00 -75.91 379.71 1.66 -74.25
By element:
Atomic # 1 Polarization: 30.60 SS G_CDS: -0.25 Total: 30.35 kcal
Atomic # 6 Polarization: -2.87 SS G_CDS: 6.75 Total: 3.88 kcal
Atomic # 7 Polarization: -135.30 SS G_CDS: -6.83 Total: -142.14 kcal
Atomic # 8 Polarization: -19.80 SS G_CDS: -0.06 Total: -19.86 kcal
Atomic # 14 Polarization: 51.46 SS G_CDS: 2.06 Total: 53.52 kcal
Total: -75.91 1.66 -74.25 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025447094.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.862 kcal
(2) G-P(sol) polarization free energy of solvation -75.912 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.950 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.254 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.609 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds