Wall clock time and date at job start Sat Apr 11 2020 06:43:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08996 * 109.47323 * 2 1
4 4 N 1.46500 * 109.46947 * 240.00505 * 2 1 3
5 5 C 1.36943 * 120.00321 * 85.00102 * 4 2 1
6 6 H 1.08001 * 119.99637 * 359.97438 * 5 4 2
7 7 C 1.38809 * 120.00030 * 179.97438 * 5 4 2
8 8 N 1.31621 * 119.99903 * 179.97438 * 7 5 4
9 9 Si 1.86800 * 120.00168 * 0.02562 * 7 5 4
10 10 H 1.48496 * 109.47311 * 89.99930 * 9 7 5
11 11 H 1.48502 * 109.46776 * 210.00010 * 9 7 5
12 12 H 1.48497 * 109.46986 * 329.99604 * 9 7 5
13 13 C 1.52991 * 109.47343 * 120.00443 * 2 1 3
14 14 H 1.08999 * 109.69999 * 306.25396 * 13 2 1
15 15 C 1.53630 * 109.66432 * 66.84560 * 13 2 1
16 16 C 1.53036 * 109.24215 * 174.55126 * 15 13 2
17 17 C 1.53044 * 109.53887 * 298.51033 * 16 15 13
18 18 C 1.53186 * 109.31026 * 61.36591 * 17 16 15
19 19 N 1.46921 * 108.77853 * 305.36391 * 18 17 16
20 20 C 1.34779 * 120.63531 * 233.59002 * 19 18 17
21 21 O 1.21598 * 120.00175 * 175.66124 * 20 19 18
22 22 C 1.47470 * 119.99413 * 355.93518 * 20 19 18
23 23 C 1.38997 * 120.29586 * 322.36344 * 22 20 19
24 24 C 1.38509 * 120.36484 * 179.78099 * 23 22 20
25 25 C 1.37828 * 120.78840 * 0.46489 * 24 23 22
26 26 C 1.39214 * 120.20268 * 359.79757 * 25 24 23
27 27 N 1.37215 * 133.65905 * 179.97438 * 26 25 24
28 28 H 0.97001 * 125.98396 * 359.97438 * 27 26 25
29 29 N 1.40031 * 108.03673 * 180.02562 * 27 26 25
30 30 C 1.30265 * 109.70246 * 0.02562 * 29 27 26
31 31 C 1.40689 * 119.78438 * 359.97438 * 26 25 24
32 32 H 1.08998 * 109.46872 * 294.33823 * 1 2 3
33 33 H 1.09005 * 109.46833 * 54.33714 * 1 2 3
34 34 H 1.09004 * 109.47238 * 174.33490 * 1 2 3
35 35 H 0.96999 * 120.00377 * 264.99986 * 4 2 1
36 36 H 0.96993 * 120.00134 * 180.02562 * 8 7 5
37 37 H 1.08993 * 109.63297 * 54.55759 * 15 13 2
38 38 H 1.09000 * 109.45507 * 294.43307 * 15 13 2
39 39 H 1.09000 * 109.45978 * 178.49101 * 16 15 13
40 40 H 1.09005 * 109.45213 * 58.52254 * 16 15 13
41 41 H 1.08996 * 109.49365 * 301.41190 * 17 16 15
42 42 H 1.09004 * 109.49663 * 181.31978 * 17 16 15
43 43 H 1.09006 * 109.58393 * 185.57890 * 18 17 16
44 44 H 1.08996 * 109.70740 * 65.22708 * 18 17 16
45 45 H 1.07998 * 119.81763 * 0.02562 * 23 22 20
46 46 H 1.07990 * 119.60595 * 180.24006 * 24 23 22
47 47 H 1.07996 * 119.90250 * 179.78331 * 25 24 23
48 48 H 1.07998 * 125.64653 * 180.02562 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6905 -1.1962
5 6 2.1491 -0.0073 -2.3758
6 1 1.8919 1.0405 -2.4243
7 6 2.6122 -0.6615 -3.5091
8 7 2.7375 -0.0049 -4.6430
9 14 3.0564 -2.4740 -3.4254
10 1 1.8594 -3.2923 -3.7454
11 1 4.1323 -2.7657 -4.4066
12 1 3.5309 -2.8046 -2.0577
13 6 2.0400 -0.7213 1.2491
14 1 1.5903 -0.2791 2.1381
15 6 1.6760 -2.2118 1.1702
16 6 2.3064 -2.9482 2.3544
17 6 3.8299 -2.8205 2.2843
18 6 4.2188 -1.3414 2.3723
19 7 3.5024 -0.6009 1.3249
20 6 4.1732 0.1785 0.4537
21 8 3.5792 0.7236 -0.4566
22 6 5.6286 0.3654 0.6010
23 6 6.1976 0.4710 1.8647
24 6 7.5650 0.6420 2.0049
25 6 8.3833 0.7199 0.8985
26 6 7.8426 0.6230 -0.3807
27 7 8.3810 0.6626 -1.6421
28 1 9.3198 0.7767 -1.8578
29 7 7.3378 0.5108 -2.5638
30 6 6.2069 0.3832 -1.9299
31 6 6.4564 0.4444 -0.5418
32 1 -0.3633 0.4235 0.9363
33 1 -0.3633 0.5992 -0.8350
34 1 -0.3634 -1.0227 -0.1014
35 1 2.2490 -1.6317 -1.1528
36 1 3.0608 -0.4621 -5.4350
37 1 2.0531 -2.6320 0.2379
38 1 0.5924 -2.3233 1.2076
39 1 2.0283 -4.0015 2.3167
40 1 1.9479 -2.5110 3.2863
41 1 4.1867 -3.2350 1.3415
42 1 4.2793 -3.3649 3.1149
43 1 5.2936 -1.2367 2.2237
44 1 3.9452 -0.9470 3.3509
45 1 5.5707 0.4156 2.7423
46 1 7.9946 0.7188 2.9927
47 1 9.4471 0.8569 1.0243
48 1 5.2389 0.2509 -2.3902
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001265089180.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:59
Heat of formation + Delta-G solvation = 122.510874 kcal
Electronic energy + Delta-G solvation = -32340.936069 eV
Core-core repulsion = 28399.743378 eV
Total energy + Delta-G solvation = -3941.192691 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.38182 -40.15050 -37.26405 -36.72728 -35.24307 -32.73561 -32.31333 -31.92212
-30.06644 -29.79871 -29.27987 -28.43339 -25.43201 -23.96902 -23.47095 -22.77453
-22.35174 -21.40324 -20.80103 -19.98291 -18.94997 -17.64939 -17.05577 -16.91270
-15.87488 -15.52035 -15.11695 -15.04884 -14.60787 -14.46287 -14.37004 -14.35884
-13.77793 -13.73473 -13.55597 -13.09547 -12.96919 -12.67373 -12.33259 -12.25209
-11.97160 -11.95127 -11.70176 -11.57938 -11.44946 -11.27762 -10.86805 -10.73249
-10.70274 -10.60603 -10.57549 -10.42772 -10.15291 -10.06919 -9.79825 -9.27011
-8.74857 -8.54032 -8.33522 -7.99882 -7.86761 -6.86888 -5.47384 -2.76273
0.73879 1.45741 2.82031 2.90077 3.22448 3.35852 3.48422 3.51028
3.58753 4.00997 4.56462 4.77982 4.80684 4.82856 4.95621 4.96555
4.98534 5.08007 5.16665 5.24672 5.31959 5.41620 5.48606 5.55111
5.63689 5.71633 5.75730 5.78951 5.84279 5.88145 6.01091 6.05168
6.07245 6.15163 6.21139 6.28410 6.34375 6.37119 6.43141 6.47797
6.69431 6.72758 6.90269 6.91623 7.03554 7.33363 7.42098 7.84018
7.89595 8.32576 8.69475 8.88259 9.50742 10.22742 10.44621 11.72503
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.009106 B = 0.006746 C = 0.004628
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3074.236496 B = 4149.866540 C = 6048.099203
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.175 3.825
3 H 0.091 0.909
4 N -0.730 5.730
5 C -0.178 4.178
6 H 0.089 0.911
7 C -0.009 4.009
8 N -0.943 5.943
9 Si 0.864 3.136
10 H -0.291 1.291
11 H -0.295 1.295
12 H -0.283 1.283
13 C 0.145 3.855
14 H 0.069 0.931
15 C -0.135 4.135
16 C -0.117 4.117
17 C -0.137 4.137
18 C 0.096 3.904
19 N -0.607 5.607
20 C 0.526 3.474
21 O -0.431 6.431
22 C -0.031 4.031
23 C -0.145 4.145
24 C -0.079 4.079
25 C -0.134 4.134
26 C 0.120 3.880
27 N -0.517 5.517
28 H 0.437 0.563
29 N -0.253 5.253
30 C 0.104 3.896
31 C -0.133 4.133
32 H 0.035 0.965
33 H 0.057 0.943
34 H 0.043 0.957
35 H 0.354 0.646
36 H 0.253 0.747
37 H 0.070 0.930
38 H 0.073 0.927
39 H 0.059 0.941
40 H 0.060 0.940
41 H 0.065 0.935
42 H 0.068 0.932
43 H 0.096 0.904
44 H 0.063 0.937
45 H 0.135 0.865
46 H 0.131 0.869
47 H 0.124 0.876
48 H 0.214 0.786
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.260 -2.307 20.200 21.945
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.066 3.934
3 H 0.108 0.892
4 N -0.374 5.374
5 C -0.309 4.309
6 H 0.107 0.893
7 C -0.202 4.202
8 N -0.595 5.595
9 Si 0.696 3.304
10 H -0.218 1.218
11 H -0.222 1.222
12 H -0.210 1.210
13 C 0.041 3.959
14 H 0.086 0.914
15 C -0.173 4.173
16 C -0.155 4.155
17 C -0.175 4.175
18 C -0.027 4.027
19 N -0.344 5.344
20 C 0.311 3.689
21 O -0.300 6.300
22 C -0.037 4.037
23 C -0.165 4.165
24 C -0.099 4.099
25 C -0.156 4.156
26 C 0.002 3.998
27 N -0.230 5.230
28 H 0.282 0.718
29 N -0.066 5.066
30 C -0.092 4.092
31 C -0.142 4.142
32 H 0.054 0.946
33 H 0.076 0.924
34 H 0.062 0.938
35 H 0.188 0.812
36 H 0.063 0.937
37 H 0.089 0.911
38 H 0.092 0.908
39 H 0.078 0.922
40 H 0.079 0.921
41 H 0.084 0.916
42 H 0.087 0.913
43 H 0.114 0.886
44 H 0.081 0.919
45 H 0.153 0.847
46 H 0.149 0.851
47 H 0.142 0.858
48 H 0.230 0.770
Dipole moment (debyes) X Y Z Total
from point charges 8.522 -1.761 18.275 20.241
hybrid contribution 0.649 -1.627 0.647 1.867
sum 9.171 -3.388 18.922 21.299
Atomic orbital electron populations
1.22545 0.99629 1.00910 0.99859 1.20667 0.90349 0.98070 0.84309
0.89201 1.42821 1.79002 1.08475 1.07062 1.18974 1.32407 0.95096
0.84406 0.89330 1.24500 1.03617 0.96004 0.96070 1.69662 1.55035
1.34636 1.00119 0.86849 0.78008 0.89044 0.76491 1.21816 1.22205
1.21009 1.21747 0.78854 0.95540 0.99729 0.91356 1.22083 1.00798
0.95649 0.98784 1.21512 0.95130 1.00234 0.98608 1.21934 0.96708
0.96514 1.02347 1.22112 0.98348 0.91449 0.90830 1.47780 1.06867
1.47319 1.32432 1.18259 0.86160 0.81950 0.82504 1.91169 1.66285
1.44955 1.27576 1.19744 0.93648 0.98254 0.92072 1.21218 0.95232
1.03932 0.96147 1.20811 0.93090 0.98127 0.97920 1.20084 0.99900
1.06770 0.88890 1.18861 0.93192 0.99976 0.87743 1.46213 1.09317
1.66059 1.01455 0.71842 1.76944 0.95279 1.18950 1.15428 1.24619
0.98228 0.95375 0.90932 1.18769 0.91985 1.09520 0.93910 0.94628
0.92376 0.93758 0.81165 0.93658 0.91138 0.90804 0.92214 0.92089
0.91580 0.91308 0.88641 0.91888 0.84748 0.85098 0.85772 0.77002
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.93 9.16 37.16 0.34 -2.59 16
2 C 0.18 3.36 1.88 -67.94 -0.13 3.23 16
3 H 0.09 1.93 5.89 -52.25 -0.31 1.63 16
4 N -0.73 -16.94 3.43 -53.43 -0.18 -17.12 16
5 C -0.18 -4.97 8.47 -15.06 -0.13 -5.10 16
6 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16
7 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16
8 N -0.94 -30.15 13.97 55.49 0.78 -29.38 16
9 Si 0.86 22.89 27.74 -169.99 -4.71 18.17 16
10 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16
11 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16
12 H -0.28 -7.15 6.52 56.52 0.37 -6.78 16
13 C 0.14 2.20 2.73 -67.37 -0.18 2.01 16
14 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
15 C -0.13 -1.91 4.89 -26.39 -0.13 -2.04 16
16 C -0.12 -1.29 5.88 -26.69 -0.16 -1.45 16
17 C -0.14 -1.50 6.08 -26.61 -0.16 -1.66 16
18 C 0.10 1.07 4.83 -3.72 -0.02 1.05 16
19 N -0.61 -9.12 2.96 -166.21 -0.49 -9.61 16
20 C 0.53 9.51 7.01 -12.50 -0.09 9.42 16
21 O -0.43 -9.56 8.83 5.28 0.05 -9.51 16
22 C -0.03 -0.50 5.28 -104.68 -0.55 -1.05 16
23 C -0.15 -1.71 7.33 -39.20 -0.29 -2.00 16
24 C -0.08 -0.78 10.00 -39.63 -0.40 -1.18 16
25 C -0.13 -1.49 10.06 -39.37 -0.40 -1.88 16
26 C 0.12 1.78 7.32 -84.17 -0.62 1.17 16
27 N -0.52 -7.71 7.45 32.35 0.24 -7.47 16
28 H 0.44 4.77 8.96 -182.65 -1.64 3.13 16
29 N -0.25 -4.92 12.58 30.81 0.39 -4.54 16
30 C 0.10 2.18 11.44 -17.10 -0.20 1.98 16
31 C -0.13 -2.39 5.95 -106.68 -0.64 -3.03 16
32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
34 H 0.04 0.75 7.05 -51.93 -0.37 0.38 16
35 H 0.35 8.32 3.47 -40.82 -0.14 8.18 16
36 H 0.25 7.89 8.31 -40.82 -0.34 7.55 16
37 H 0.07 1.22 6.05 -51.93 -0.31 0.91 16
38 H 0.07 0.98 7.06 -51.93 -0.37 0.61 16
39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
43 H 0.10 1.03 4.44 -51.93 -0.23 0.80 16
44 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16
45 H 0.13 1.27 6.18 -52.49 -0.32 0.95 16
46 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16
47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16
48 H 0.21 5.21 7.67 -52.49 -0.40 4.81 16
LS Contribution 365.82 15.07 5.51 5.51
Total: -1.00 -34.44 365.82 -10.16 -44.60
By element:
Atomic # 1 Polarization: 20.72 SS G_CDS: -7.91 Total: 12.81 kcal
Atomic # 6 Polarization: 0.36 SS G_CDS: -3.83 Total: -3.47 kcal
Atomic # 7 Polarization: -68.85 SS G_CDS: 0.73 Total: -68.12 kcal
Atomic # 8 Polarization: -9.56 SS G_CDS: 0.05 Total: -9.51 kcal
Atomic # 14 Polarization: 22.89 SS G_CDS: -4.71 Total: 18.17 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -34.44 -10.16 -44.60 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265089180.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 167.116 kcal
(2) G-P(sol) polarization free energy of solvation -34.442 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.674 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal
(6) G-S(sol) free energy of system = (1) + (5) 122.511 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds