Wall clock time and date at job start Sat Apr 11 2020 06:43:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08996 * 109.47323 * 2 1
4 4 N 1.46500 * 109.46947 * 240.00505 * 2 1 3
5 5 C 1.36943 * 120.00321 * 85.00102 * 4 2 1
6 6 H 1.08001 * 119.99637 * 359.97438 * 5 4 2
7 7 C 1.38809 * 120.00030 * 179.97438 * 5 4 2
8 8 N 1.31621 * 119.99903 * 179.97438 * 7 5 4
9 9 Si 1.86800 * 120.00168 * 0.02562 * 7 5 4
10 10 H 1.48496 * 109.47311 * 89.99930 * 9 7 5
11 11 H 1.48502 * 109.46776 * 210.00010 * 9 7 5
12 12 H 1.48497 * 109.46986 * 329.99604 * 9 7 5
13 13 C 1.52991 * 109.47343 * 120.00443 * 2 1 3
14 14 H 1.08999 * 109.69999 * 306.25396 * 13 2 1
15 15 C 1.53630 * 109.66432 * 66.84560 * 13 2 1
16 16 C 1.53036 * 109.24215 * 174.55126 * 15 13 2
17 17 C 1.53044 * 109.53887 * 298.51033 * 16 15 13
18 18 C 1.53186 * 109.31026 * 61.36591 * 17 16 15
19 19 N 1.46921 * 108.77853 * 305.36391 * 18 17 16
20 20 C 1.34779 * 120.63531 * 233.59002 * 19 18 17
21 21 O 1.21598 * 120.00175 * 175.66124 * 20 19 18
22 22 C 1.47470 * 119.99413 * 355.93518 * 20 19 18
23 23 C 1.38997 * 120.29586 * 322.36344 * 22 20 19
24 24 C 1.38509 * 120.36484 * 179.78099 * 23 22 20
25 25 C 1.37828 * 120.78840 * 0.46489 * 24 23 22
26 26 C 1.39214 * 120.20268 * 359.79757 * 25 24 23
27 27 N 1.37215 * 133.65905 * 179.97438 * 26 25 24
28 28 H 0.97001 * 125.98396 * 359.97438 * 27 26 25
29 29 N 1.40031 * 108.03673 * 180.02562 * 27 26 25
30 30 C 1.30265 * 109.70246 * 0.02562 * 29 27 26
31 31 C 1.40689 * 119.78438 * 359.97438 * 26 25 24
32 32 H 1.08998 * 109.46872 * 294.33823 * 1 2 3
33 33 H 1.09005 * 109.46833 * 54.33714 * 1 2 3
34 34 H 1.09004 * 109.47238 * 174.33490 * 1 2 3
35 35 H 0.96999 * 120.00377 * 264.99986 * 4 2 1
36 36 H 0.96993 * 120.00134 * 180.02562 * 8 7 5
37 37 H 1.08993 * 109.63297 * 54.55759 * 15 13 2
38 38 H 1.09000 * 109.45507 * 294.43307 * 15 13 2
39 39 H 1.09000 * 109.45978 * 178.49101 * 16 15 13
40 40 H 1.09005 * 109.45213 * 58.52254 * 16 15 13
41 41 H 1.08996 * 109.49365 * 301.41190 * 17 16 15
42 42 H 1.09004 * 109.49663 * 181.31978 * 17 16 15
43 43 H 1.09006 * 109.58393 * 185.57890 * 18 17 16
44 44 H 1.08996 * 109.70740 * 65.22708 * 18 17 16
45 45 H 1.07998 * 119.81763 * 0.02562 * 23 22 20
46 46 H 1.07990 * 119.60595 * 180.24006 * 24 23 22
47 47 H 1.07996 * 119.90250 * 179.78331 * 25 24 23
48 48 H 1.07998 * 125.64653 * 180.02562 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6905 -1.1962
5 6 2.1491 -0.0073 -2.3758
6 1 1.8919 1.0405 -2.4243
7 6 2.6122 -0.6615 -3.5091
8 7 2.7375 -0.0049 -4.6430
9 14 3.0564 -2.4740 -3.4254
10 1 1.8594 -3.2923 -3.7454
11 1 4.1323 -2.7657 -4.4066
12 1 3.5309 -2.8046 -2.0577
13 6 2.0400 -0.7213 1.2491
14 1 1.5903 -0.2791 2.1381
15 6 1.6760 -2.2118 1.1702
16 6 2.3064 -2.9482 2.3544
17 6 3.8299 -2.8205 2.2843
18 6 4.2188 -1.3414 2.3723
19 7 3.5024 -0.6009 1.3249
20 6 4.1732 0.1785 0.4537
21 8 3.5792 0.7236 -0.4566
22 6 5.6286 0.3654 0.6010
23 6 6.1976 0.4710 1.8647
24 6 7.5650 0.6420 2.0049
25 6 8.3833 0.7199 0.8985
26 6 7.8426 0.6230 -0.3807
27 7 8.3810 0.6626 -1.6421
28 1 9.3198 0.7767 -1.8578
29 7 7.3378 0.5108 -2.5638
30 6 6.2069 0.3832 -1.9299
31 6 6.4564 0.4444 -0.5418
32 1 -0.3633 0.4235 0.9363
33 1 -0.3633 0.5992 -0.8350
34 1 -0.3634 -1.0227 -0.1014
35 1 2.2490 -1.6317 -1.1528
36 1 3.0608 -0.4621 -5.4350
37 1 2.0531 -2.6320 0.2379
38 1 0.5924 -2.3233 1.2076
39 1 2.0283 -4.0015 2.3167
40 1 1.9479 -2.5110 3.2863
41 1 4.1867 -3.2350 1.3415
42 1 4.2793 -3.3649 3.1149
43 1 5.2936 -1.2367 2.2237
44 1 3.9452 -0.9470 3.3509
45 1 5.5707 0.4156 2.7423
46 1 7.9946 0.7188 2.9927
47 1 9.4471 0.8569 1.0243
48 1 5.2389 0.2509 -2.3902
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001265089180.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:58
Heat of formation + Delta-G solvation = 97.667724 kcal
Electronic energy + Delta-G solvation = -32342.013348 eV
Core-core repulsion = 28399.743378 eV
Total energy + Delta-G solvation = -3942.269971 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.58796 -41.41034 -38.44934 -37.92313 -36.78004 -34.24728 -33.74447 -33.28850
-31.73967 -30.93660 -30.51021 -29.84754 -26.60273 -25.53070 -24.72913 -24.21234
-23.49688 -22.75358 -21.90817 -21.38735 -20.19773 -19.56433 -18.41906 -18.01163
-17.14897 -16.71159 -16.48987 -16.26192 -16.05178 -15.77935 -15.73839 -15.50558
-15.27652 -14.97410 -14.96435 -14.48310 -14.40191 -13.98821 -13.90282 -13.65612
-13.24667 -13.19681 -12.95061 -12.87772 -12.77126 -12.58138 -12.56467 -12.32526
-12.01348 -11.97301 -11.84641 -11.73005 -11.56282 -11.41839 -11.37425 -11.11370
-10.83845 -9.72442 -9.68356 -9.38963 -8.96276 -8.84109 -7.82548 -5.04963
-0.37587 0.44375 1.25767 1.29625 1.36179 1.42168 1.76810 2.00944
2.24569 2.54547 2.88281 3.47823 3.49054 3.69281 3.79683 3.84166
3.93313 3.98244 4.03515 4.09075 4.17235 4.24562 4.36943 4.38760
4.44368 4.63625 4.70056 4.76141 4.79360 4.86438 4.88124 4.95251
4.99505 5.04326 5.09647 5.15915 5.27112 5.28823 5.31276 5.40024
5.41155 5.48803 5.55927 5.58173 5.81585 5.95729 6.04063 6.35099
6.39210 6.54960 6.69742 7.29079 7.61394 8.08280 8.26953 9.42017
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.009106 B = 0.006746 C = 0.004628
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3074.236496 B = 4149.866540 C = 6048.099203
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.168 3.832
3 H 0.061 0.939
4 N -0.725 5.725
5 C -0.132 4.132
6 H 0.044 0.956
7 C -0.077 4.077
8 N -0.996 5.996
9 Si 0.930 3.070
10 H -0.285 1.285
11 H -0.311 1.311
12 H -0.269 1.269
13 C 0.149 3.851
14 H 0.106 0.894
15 C -0.134 4.134
16 C -0.110 4.110
17 C -0.136 4.136
18 C 0.090 3.910
19 N -0.605 5.605
20 C 0.519 3.481
21 O -0.497 6.497
22 C -0.069 4.069
23 C -0.118 4.118
24 C -0.061 4.061
25 C -0.118 4.118
26 C 0.113 3.887
27 N -0.498 5.498
28 H 0.455 0.545
29 N -0.283 5.283
30 C 0.070 3.930
31 C -0.166 4.166
32 H 0.075 0.925
33 H 0.024 0.976
34 H 0.050 0.950
35 H 0.355 0.645
36 H 0.245 0.755
37 H 0.030 0.970
38 H 0.084 0.916
39 H 0.068 0.932
40 H 0.091 0.909
41 H 0.031 0.969
42 H 0.105 0.895
43 H 0.101 0.899
44 H 0.105 0.895
45 H 0.168 0.832
46 H 0.188 0.812
47 H 0.168 0.832
48 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.267 -3.797 27.225 29.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.060 3.940
3 H 0.079 0.921
4 N -0.368 5.368
5 C -0.265 4.265
6 H 0.062 0.938
7 C -0.266 4.266
8 N -0.652 5.652
9 Si 0.762 3.238
10 H -0.212 1.212
11 H -0.239 1.239
12 H -0.195 1.195
13 C 0.045 3.955
14 H 0.124 0.876
15 C -0.172 4.172
16 C -0.148 4.148
17 C -0.174 4.174
18 C -0.032 4.032
19 N -0.340 5.340
20 C 0.306 3.694
21 O -0.371 6.371
22 C -0.075 4.075
23 C -0.137 4.137
24 C -0.081 4.081
25 C -0.140 4.140
26 C -0.004 4.004
27 N -0.216 5.216
28 H 0.302 0.698
29 N -0.099 5.099
30 C -0.125 4.125
31 C -0.175 4.175
32 H 0.094 0.906
33 H 0.044 0.956
34 H 0.069 0.931
35 H 0.189 0.811
36 H 0.054 0.946
37 H 0.048 0.952
38 H 0.103 0.897
39 H 0.086 0.914
40 H 0.110 0.890
41 H 0.050 0.950
42 H 0.123 0.877
43 H 0.119 0.881
44 H 0.123 0.877
45 H 0.185 0.815
46 H 0.205 0.795
47 H 0.186 0.814
48 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges 10.514 -3.293 25.422 27.707
hybrid contribution 0.108 -1.032 -1.300 1.663
sum 10.622 -4.325 24.123 26.710
Atomic orbital electron populations
1.22387 0.97926 1.01002 1.00638 1.20777 0.91352 0.97026 0.84822
0.92114 1.42778 1.78767 1.08287 1.06985 1.18725 1.28709 0.93036
0.86004 0.93768 1.25024 1.05574 1.00010 0.95955 1.69849 1.58172
1.36300 1.00886 0.85742 0.77197 0.84379 0.76492 1.21184 1.23930
1.19495 1.21703 0.79392 0.96023 0.98341 0.87642 1.22071 1.01682
0.94797 0.98662 1.21501 0.94838 1.00471 0.97976 1.21955 0.96869
0.96512 1.02045 1.22479 0.98371 0.91231 0.91075 1.47927 1.06907
1.46583 1.32601 1.18757 0.87272 0.81340 0.82038 1.91139 1.67763
1.47863 1.30333 1.19726 0.92405 1.01930 0.93467 1.21673 0.96788
1.00323 0.94941 1.21474 0.91797 0.94928 0.99928 1.20706 1.02341
1.04026 0.86915 1.19259 0.91805 1.00492 0.88856 1.46065 1.09207
1.65094 1.01216 0.69754 1.76745 0.96079 1.19733 1.17313 1.23900
0.96764 0.98469 0.93318 1.18911 0.94246 1.11542 0.92755 0.90628
0.95629 0.93077 0.81105 0.94631 0.95165 0.89728 0.91361 0.89043
0.95001 0.87703 0.88111 0.87679 0.81490 0.79472 0.81434 0.82399
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.53 9.16 71.98 0.66 -4.87 16
2 C 0.17 6.62 1.88 44.99 0.08 6.70 16
3 H 0.06 2.80 5.89 -7.36 -0.04 2.76 16
4 N -0.73 -35.73 3.43 -322.96 -1.11 -36.84 16
5 C -0.13 -8.07 8.47 84.03 0.71 -7.36 16
6 H 0.04 3.06 8.06 -2.91 -0.02 3.03 16
7 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16
8 N -1.00 -69.67 13.97 21.65 0.30 -69.36 16
9 Si 0.93 51.42 27.74 68.60 1.90 53.32 16
10 H -0.28 -15.27 7.11 99.48 0.71 -14.56 16
11 H -0.31 -17.89 7.11 99.48 0.71 -17.18 16
12 H -0.27 -13.94 6.52 99.48 0.65 -13.29 16
13 C 0.15 4.22 2.73 45.12 0.12 4.34 16
14 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16
15 C -0.13 -3.47 4.89 30.82 0.15 -3.32 16
16 C -0.11 -1.92 5.88 30.62 0.18 -1.74 16
17 C -0.14 -2.37 6.08 30.67 0.19 -2.19 16
18 C 0.09 1.56 4.83 86.36 0.42 1.98 16
19 N -0.61 -17.06 2.96 -798.04 -2.36 -19.42 16
20 C 0.52 19.23 7.01 86.68 0.61 19.83 16
21 O -0.50 -24.02 8.83 -4.03 -0.04 -24.05 16
22 C -0.07 -2.19 5.28 -19.90 -0.11 -2.30 16
23 C -0.12 -2.22 7.33 22.52 0.16 -2.06 16
24 C -0.06 -0.79 10.00 22.24 0.22 -0.57 16
25 C -0.12 -2.00 10.06 22.41 0.23 -1.77 16
26 C 0.11 3.22 7.32 39.13 0.29 3.51 16
27 N -0.50 -14.98 7.45 -51.56 -0.38 -15.37 16
28 H 0.45 9.52 8.96 -213.36 -1.91 7.60 16
29 N -0.28 -12.00 12.58 -56.45 -0.71 -12.71 16
30 C 0.07 3.27 11.44 85.65 0.98 4.25 16
31 C -0.17 -6.20 5.95 -21.20 -0.13 -6.32 16
32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
33 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16
34 H 0.05 1.69 7.05 -2.38 -0.02 1.67 16
35 H 0.35 17.43 3.47 -92.71 -0.32 17.11 16
36 H 0.24 16.67 8.31 -92.71 -0.77 15.90 16
37 H 0.03 1.03 6.05 -2.39 -0.01 1.01 16
38 H 0.08 1.99 7.06 -2.39 -0.02 1.97 16
39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
40 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16
41 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16
42 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16
43 H 0.10 1.66 4.44 -2.38 -0.01 1.65 16
44 H 0.11 1.05 8.09 -2.39 -0.02 1.03 16
45 H 0.17 2.04 6.18 -2.91 -0.02 2.02 16
46 H 0.19 0.55 8.06 -2.92 -0.02 0.53 16
47 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16
48 H 0.16 9.06 7.67 -2.91 -0.02 9.04 16
Total: -1.00 -91.30 365.82 1.53 -89.77
By element:
Atomic # 1 Polarization: 32.37 SS G_CDS: -1.31 Total: 31.06 kcal
Atomic # 6 Polarization: -1.62 SS G_CDS: 5.23 Total: 3.61 kcal
Atomic # 7 Polarization: -149.44 SS G_CDS: -4.26 Total: -153.70 kcal
Atomic # 8 Polarization: -24.02 SS G_CDS: -0.04 Total: -24.05 kcal
Atomic # 14 Polarization: 51.42 SS G_CDS: 1.90 Total: 53.32 kcal
Total: -91.30 1.53 -89.77 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265089180.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 187.437 kcal
(2) G-P(sol) polarization free energy of solvation -91.297 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.769 kcal
(6) G-S(sol) free energy of system = (1) + (5) 97.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds