Wall clock time and date at job start Sat Apr 11 2020 06:45:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09008 * 109.46752 * 2 1
4 4 N 1.46499 * 109.47432 * 119.99491 * 2 1 3
5 5 C 1.36938 * 120.00298 * 275.00853 * 4 2 1
6 6 H 1.07995 * 119.99647 * 359.97438 * 5 4 2
7 7 C 1.38811 * 119.99939 * 180.02562 * 5 4 2
8 8 N 1.31622 * 120.00199 * 359.97438 * 7 5 4
9 9 Si 1.86802 * 119.99920 * 179.97438 * 7 5 4
10 10 H 1.48497 * 109.47059 * 59.99393 * 9 7 5
11 11 H 1.48493 * 109.47151 * 179.97438 * 9 7 5
12 12 H 1.48502 * 109.46979 * 299.99681 * 9 7 5
13 13 C 1.53004 * 109.47520 * 239.99924 * 2 1 3
14 14 H 1.08993 * 109.49254 * 299.93537 * 13 2 1
15 15 C 1.53043 * 109.49219 * 59.99748 * 13 2 1
16 16 C 1.53043 * 109.53279 * 181.31791 * 15 13 2
17 17 C 1.53188 * 109.31513 * 298.63603 * 16 15 13
18 18 N 1.46927 * 108.77791 * 54.63524 * 17 16 15
19 19 C 1.34768 * 120.63149 * 126.36886 * 18 17 16
20 20 O 1.21598 * 120.00247 * 176.20974 * 19 18 17
21 21 C 1.47568 * 120.00330 * 356.21019 * 19 18 17
22 22 C 1.41762 * 120.01288 * 50.80829 * 21 19 18
23 23 C 1.35623 * 119.54284 * 179.97438 * 22 21 19
24 24 C 1.41181 * 119.50464 * 0.02562 * 23 22 21
25 25 N 1.32414 * 132.11172 * 179.97438 * 24 23 22
26 26 C 1.33599 * 109.22470 * 180.02562 * 25 24 23
27 27 C 1.34998 * 108.65864 * 359.97438 * 26 25 24
28 28 N 1.37014 * 107.14103 * 0.02562 * 27 26 25
29 29 C 1.35922 * 132.41953 * 180.29391 * 28 27 26
30 30 C 1.46932 * 118.73523 * 306.39238 * 18 17 16
31 31 H 1.09008 * 109.46752 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47513 * 300.00203 * 1 2 3
33 33 H 1.09000 * 109.47241 * 60.00131 * 1 2 3
34 34 H 0.97005 * 119.99914 * 95.00217 * 4 2 1
35 35 H 0.96991 * 119.99906 * 180.02562 * 8 7 5
36 36 H 1.08997 * 109.45962 * 301.33577 * 15 13 2
37 37 H 1.08995 * 109.46459 * 61.31524 * 15 13 2
38 38 H 1.09001 * 109.49947 * 58.58549 * 16 15 13
39 39 H 1.08998 * 109.49939 * 178.68287 * 16 15 13
40 40 H 1.09005 * 109.59070 * 174.42177 * 17 16 15
41 41 H 1.09004 * 109.58452 * 294.84668 * 17 16 15
42 42 H 1.08002 * 120.22803 * 359.95489 * 22 21 19
43 43 H 1.08004 * 120.24930 * 180.02562 * 23 22 21
44 44 H 1.07992 * 125.67129 * 180.02562 * 26 25 24
45 45 H 1.07997 * 126.43396 * 179.97438 * 27 26 25
46 46 H 1.08000 * 119.75404 * 359.93262 * 29 28 27
47 47 H 1.09000 * 109.58723 * 293.82029 * 30 18 17
48 48 H 1.09001 * 109.58287 * 173.39020 * 30 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 7 2.0183 -0.6905 1.1962
5 6 2.1490 -0.0073 2.3758
6 1 1.8924 1.0406 2.4241
7 6 2.6123 -0.6615 3.5090
8 7 2.9255 -1.9386 3.4500
9 14 2.7912 0.2705 5.1180
10 1 1.4690 0.8073 5.5288
11 1 3.3002 -0.6478 6.1681
12 1 3.7463 1.3931 4.9361
13 6 2.0401 -0.7213 -1.2492
14 1 1.6779 -1.7493 -1.2490
15 6 1.5302 -0.0003 -2.4992
16 6 2.0126 -0.7399 -3.7491
17 6 3.5442 -0.7369 -3.7801
18 7 4.0439 -1.2970 -2.5171
19 6 4.9181 -2.3227 -2.5190
20 8 5.3772 -2.7323 -1.4702
21 6 5.3183 -2.9488 -3.7940
22 6 5.7727 -2.1427 -4.8679
23 6 6.1386 -2.7281 -6.0352
24 6 6.0608 -4.1320 -6.1634
25 7 6.3466 -4.9494 -7.1651
26 6 6.1013 -6.2078 -6.7897
27 6 5.6482 -6.1987 -5.5181
28 7 5.6175 -4.8912 -5.1097
29 6 5.2564 -4.3048 -3.9379
30 6 3.5719 -0.7179 -1.2518
31 1 -0.3633 -1.0278 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 -0.3634 0.5138 -0.8900
34 1 2.2491 -1.6317 1.1527
35 1 3.2489 -2.3957 4.2419
36 1 0.4405 0.0204 -2.4874
37 1 1.9126 1.0203 -2.5112
38 1 1.6513 -1.7680 -3.7257
39 1 1.6298 -0.2394 -4.6385
40 1 3.8941 -1.3460 -4.6137
41 1 3.9053 0.2852 -3.8949
42 1 5.8269 -1.0697 -4.7573
43 1 6.4869 -2.1250 -6.8607
44 1 6.2427 -7.0864 -7.4015
45 1 5.3626 -7.0602 -4.9327
46 1 4.9137 -4.9160 -3.1160
47 1 3.9353 0.3056 -1.1604
48 1 3.9400 -1.3146 -0.4172
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001568415192.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:57
Heat of formation + Delta-G solvation = 72.680954 kcal
Electronic energy + Delta-G solvation = -29928.325669 eV
Core-core repulsion = 25984.972191 eV
Total energy + Delta-G solvation = -3943.353478 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.69 seconds
Orbital eigenvalues (eV)
-43.13064 -40.42884 -38.14955 -37.09245 -35.53052 -34.07125 -32.98968 -31.81852
-31.04205 -29.75577 -29.11450 -28.21537 -25.74558 -24.75834 -23.76358 -23.18259
-22.93942 -22.06156 -21.23091 -19.70838 -19.36775 -18.37477 -17.52214 -17.07550
-16.55224 -16.35834 -16.03084 -15.25319 -14.99084 -14.92464 -14.73569 -14.54233
-14.30247 -13.88686 -13.79299 -13.72002 -13.22446 -13.07547 -12.89199 -12.83682
-12.39264 -12.17428 -12.12098 -11.94241 -11.49439 -11.35613 -11.06877 -10.98401
-10.86011 -10.72712 -10.62966 -10.47572 -10.31482 -10.20231 -10.02067 -9.76458
-9.56055 -9.15680 -8.89911 -8.56490 -8.21746 -6.93611 -5.72614 -3.02054
0.31243 0.77181 2.08935 2.37475 2.74795 2.97217 3.22633 3.45523
3.49960 3.51312 3.87362 4.10842 4.26142 4.38488 4.55258 4.59321
4.71525 4.85778 4.91230 4.98950 5.04386 5.12335 5.18349 5.30168
5.39850 5.46964 5.55536 5.58772 5.65076 5.68247 5.74565 5.77287
5.87844 5.97023 6.04087 6.07505 6.16142 6.18809 6.26874 6.39028
6.43029 6.45804 6.62607 6.66734 6.69235 6.89158 7.07963 7.37885
7.50946 7.72047 8.09836 8.45029 9.56165 10.13367 10.47620 11.49546
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.016165 B = 0.002646 C = 0.002419
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1731.770037 B =10580.602217 C =11569.881765
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.180 3.820
3 H 0.047 0.953
4 N -0.724 5.724
5 C -0.240 4.240
6 H 0.069 0.931
7 C -0.011 4.011
8 N -0.930 5.930
9 Si 0.904 3.096
10 H -0.287 1.287
11 H -0.292 1.292
12 H -0.286 1.286
13 C -0.103 4.103
14 H 0.070 0.930
15 C -0.115 4.115
16 C -0.134 4.134
17 C 0.097 3.903
18 N -0.599 5.599
19 C 0.564 3.436
20 O -0.517 6.517
21 C -0.144 4.144
22 C -0.079 4.079
23 C -0.082 4.082
24 C 0.228 3.772
25 N -0.493 5.493
26 C 0.032 3.968
27 C -0.093 4.093
28 N -0.365 5.365
29 C 0.117 3.883
30 C 0.123 3.877
31 H 0.044 0.956
32 H 0.052 0.948
33 H 0.038 0.962
34 H 0.384 0.616
35 H 0.255 0.745
36 H 0.070 0.930
37 H 0.064 0.936
38 H 0.065 0.935
39 H 0.073 0.927
40 H 0.087 0.913
41 H 0.072 0.928
42 H 0.150 0.850
43 H 0.157 0.843
44 H 0.183 0.817
45 H 0.186 0.814
46 H 0.173 0.827
47 H 0.068 0.932
48 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.965 -2.142 -23.126 23.308
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.070 3.930
3 H 0.065 0.935
4 N -0.366 5.366
5 C -0.371 4.371
6 H 0.087 0.913
7 C -0.208 4.208
8 N -0.578 5.578
9 Si 0.736 3.264
10 H -0.214 1.214
11 H -0.218 1.218
12 H -0.213 1.213
13 C -0.123 4.123
14 H 0.088 0.912
15 C -0.153 4.153
16 C -0.172 4.172
17 C -0.026 4.026
18 N -0.332 5.332
19 C 0.349 3.651
20 O -0.393 6.393
21 C -0.150 4.150
22 C -0.103 4.103
23 C -0.103 4.103
24 C -0.016 4.016
25 N -0.213 5.213
26 C -0.119 4.119
27 C -0.223 4.223
28 N -0.037 5.037
29 C -0.008 4.008
30 C 0.002 3.998
31 H 0.064 0.936
32 H 0.071 0.929
33 H 0.057 0.943
34 H 0.218 0.782
35 H 0.065 0.935
36 H 0.089 0.911
37 H 0.083 0.917
38 H 0.083 0.917
39 H 0.091 0.909
40 H 0.105 0.895
41 H 0.091 0.909
42 H 0.167 0.833
43 H 0.174 0.826
44 H 0.200 0.800
45 H 0.203 0.797
46 H 0.191 0.809
47 H 0.086 0.914
48 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 2.525 -2.101 -23.150 23.382
hybrid contribution -0.259 -0.228 1.746 1.780
sum 2.266 -2.329 -21.404 21.650
Atomic orbital electron populations
1.22483 0.99296 1.00789 0.99914 1.20172 0.91843 0.95278 0.85728
0.93460 1.42442 1.78105 1.10724 1.05286 1.19139 1.36834 0.93761
0.87356 0.91334 1.24730 1.02135 0.95931 0.97982 1.69650 1.50568
1.08616 1.28937 0.86315 0.77681 0.78642 0.83807 1.21393 1.21768
1.21310 1.21769 0.94506 1.00555 0.95456 0.91202 1.21640 1.01164
0.99091 0.93447 1.21920 0.94739 1.01587 0.98934 1.22052 0.95087
0.99308 0.86167 1.48085 1.43417 1.33345 1.08329 1.17764 0.79636
0.80134 0.87545 1.90923 1.53652 1.62479 1.32235 1.19424 1.06567
0.92399 0.96637 1.21121 0.97282 1.00786 0.91116 1.20159 1.01764
0.89032 0.99304 1.21139 1.02282 0.93895 0.84253 1.70744 1.23490
1.00947 1.26125 1.22550 1.00438 0.95468 0.93420 1.22818 1.15245
0.84937 0.99307 1.42791 1.41413 1.08391 1.11095 1.21556 0.97496
0.93735 0.87982 1.21787 0.93954 0.99197 0.84881 0.93646 0.92851
0.94280 0.78229 0.93475 0.91121 0.91746 0.91667 0.90870 0.89497
0.90945 0.83258 0.82556 0.80009 0.79722 0.80941 0.91364 0.87318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.81 9.14 37.15 0.34 -2.47 16
2 C 0.18 3.34 2.47 -67.93 -0.17 3.17 16
3 H 0.05 0.89 8.08 -51.92 -0.42 0.47 16
4 N -0.72 -17.52 4.52 -53.43 -0.24 -17.76 16
5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16
6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16
7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16
8 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16
9 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16
10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
13 C -0.10 -1.55 1.97 -90.50 -0.18 -1.73 16
14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
15 C -0.12 -1.30 4.85 -26.69 -0.13 -1.43 16
16 C -0.13 -1.22 6.08 -26.61 -0.16 -1.38 16
17 C 0.10 0.88 5.38 -3.71 -0.02 0.86 16
18 N -0.60 -7.85 2.97 -173.98 -0.52 -8.37 16
19 C 0.56 8.21 7.21 -12.46 -0.09 8.12 16
20 O -0.52 -10.03 16.46 5.28 0.09 -9.95 16
21 C -0.14 -1.63 4.95 -105.37 -0.52 -2.15 16
22 C -0.08 -0.69 7.37 -39.17 -0.29 -0.98 16
23 C -0.08 -0.74 10.09 -39.40 -0.40 -1.13 16
24 C 0.23 2.60 7.81 -155.93 -1.22 1.38 16
25 N -0.49 -5.96 11.31 -12.72 -0.14 -6.11 16
26 C 0.03 0.30 11.82 -17.93 -0.21 0.09 16
27 C -0.09 -0.84 11.75 -16.39 -0.19 -1.03 16
28 N -0.36 -3.94 2.93 -62.31 -0.18 -4.12 16
29 C 0.12 1.28 10.58 -16.36 -0.17 1.10 16
30 C 0.12 1.98 5.46 -3.71 -0.02 1.96 16
31 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16
32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
33 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16
34 H 0.38 10.11 7.62 -40.82 -0.31 9.80 16
35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
36 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16
37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
40 H 0.09 0.67 4.55 -51.93 -0.24 0.44 16
41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
42 H 0.15 0.98 7.11 -52.49 -0.37 0.61 16
43 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16
44 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16
45 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16
46 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16
47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16
48 H 0.11 2.25 6.54 -51.93 -0.34 1.91 16
LS Contribution 384.67 15.07 5.80 5.80
Total: -1.00 -34.54 384.67 -10.14 -44.68
By element:
Atomic # 1 Polarization: 15.60 SS G_CDS: -6.96 Total: 8.64 kcal
Atomic # 6 Polarization: 0.95 SS G_CDS: -3.68 Total: -2.72 kcal
Atomic # 7 Polarization: -63.52 SS G_CDS: -0.36 Total: -63.88 kcal
Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal
Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -34.54 -10.14 -44.68 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568415192.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.363 kcal
(2) G-P(sol) polarization free energy of solvation -34.543 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.820 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.681 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.69 seconds