Wall clock time and date at job start Sat Apr 11 2020 06:45:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09008 * 109.46752 * 2 1
4 4 N 1.46499 * 109.47432 * 119.99491 * 2 1 3
5 5 C 1.36938 * 120.00298 * 275.00853 * 4 2 1
6 6 H 1.07995 * 119.99647 * 359.97438 * 5 4 2
7 7 C 1.38811 * 119.99939 * 180.02562 * 5 4 2
8 8 N 1.31622 * 120.00199 * 359.97438 * 7 5 4
9 9 Si 1.86802 * 119.99920 * 179.97438 * 7 5 4
10 10 H 1.48497 * 109.47059 * 59.99393 * 9 7 5
11 11 H 1.48493 * 109.47151 * 179.97438 * 9 7 5
12 12 H 1.48502 * 109.46979 * 299.99681 * 9 7 5
13 13 C 1.53004 * 109.47520 * 239.99924 * 2 1 3
14 14 H 1.08993 * 109.49254 * 299.93537 * 13 2 1
15 15 C 1.53043 * 109.49219 * 59.99748 * 13 2 1
16 16 C 1.53043 * 109.53279 * 181.31791 * 15 13 2
17 17 C 1.53188 * 109.31513 * 298.63603 * 16 15 13
18 18 N 1.46927 * 108.77791 * 54.63524 * 17 16 15
19 19 C 1.34768 * 120.63149 * 126.36886 * 18 17 16
20 20 O 1.21598 * 120.00247 * 176.20974 * 19 18 17
21 21 C 1.47568 * 120.00330 * 356.21019 * 19 18 17
22 22 C 1.41762 * 120.01288 * 50.80829 * 21 19 18
23 23 C 1.35623 * 119.54284 * 179.97438 * 22 21 19
24 24 C 1.41181 * 119.50464 * 0.02562 * 23 22 21
25 25 N 1.32414 * 132.11172 * 179.97438 * 24 23 22
26 26 C 1.33599 * 109.22470 * 180.02562 * 25 24 23
27 27 C 1.34998 * 108.65864 * 359.97438 * 26 25 24
28 28 N 1.37014 * 107.14103 * 0.02562 * 27 26 25
29 29 C 1.35922 * 132.41953 * 180.29391 * 28 27 26
30 30 C 1.46932 * 118.73523 * 306.39238 * 18 17 16
31 31 H 1.09008 * 109.46752 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47513 * 300.00203 * 1 2 3
33 33 H 1.09000 * 109.47241 * 60.00131 * 1 2 3
34 34 H 0.97005 * 119.99914 * 95.00217 * 4 2 1
35 35 H 0.96991 * 119.99906 * 180.02562 * 8 7 5
36 36 H 1.08997 * 109.45962 * 301.33577 * 15 13 2
37 37 H 1.08995 * 109.46459 * 61.31524 * 15 13 2
38 38 H 1.09001 * 109.49947 * 58.58549 * 16 15 13
39 39 H 1.08998 * 109.49939 * 178.68287 * 16 15 13
40 40 H 1.09005 * 109.59070 * 174.42177 * 17 16 15
41 41 H 1.09004 * 109.58452 * 294.84668 * 17 16 15
42 42 H 1.08002 * 120.22803 * 359.95489 * 22 21 19
43 43 H 1.08004 * 120.24930 * 180.02562 * 23 22 21
44 44 H 1.07992 * 125.67129 * 180.02562 * 26 25 24
45 45 H 1.07997 * 126.43396 * 179.97438 * 27 26 25
46 46 H 1.08000 * 119.75404 * 359.93262 * 29 28 27
47 47 H 1.09000 * 109.58723 * 293.82029 * 30 18 17
48 48 H 1.09001 * 109.58287 * 173.39020 * 30 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 7 2.0183 -0.6905 1.1962
5 6 2.1490 -0.0073 2.3758
6 1 1.8924 1.0406 2.4241
7 6 2.6123 -0.6615 3.5090
8 7 2.9255 -1.9386 3.4500
9 14 2.7912 0.2705 5.1180
10 1 1.4690 0.8073 5.5288
11 1 3.3002 -0.6478 6.1681
12 1 3.7463 1.3931 4.9361
13 6 2.0401 -0.7213 -1.2492
14 1 1.6779 -1.7493 -1.2490
15 6 1.5302 -0.0003 -2.4992
16 6 2.0126 -0.7399 -3.7491
17 6 3.5442 -0.7369 -3.7801
18 7 4.0439 -1.2970 -2.5171
19 6 4.9181 -2.3227 -2.5190
20 8 5.3772 -2.7323 -1.4702
21 6 5.3183 -2.9488 -3.7940
22 6 5.7727 -2.1427 -4.8679
23 6 6.1386 -2.7281 -6.0352
24 6 6.0608 -4.1320 -6.1634
25 7 6.3466 -4.9494 -7.1651
26 6 6.1013 -6.2078 -6.7897
27 6 5.6482 -6.1987 -5.5181
28 7 5.6175 -4.8912 -5.1097
29 6 5.2564 -4.3048 -3.9379
30 6 3.5719 -0.7179 -1.2518
31 1 -0.3633 -1.0278 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 -0.3634 0.5138 -0.8900
34 1 2.2491 -1.6317 1.1527
35 1 3.2489 -2.3957 4.2419
36 1 0.4405 0.0204 -2.4874
37 1 1.9126 1.0203 -2.5112
38 1 1.6513 -1.7680 -3.7257
39 1 1.6298 -0.2394 -4.6385
40 1 3.8941 -1.3460 -4.6137
41 1 3.9053 0.2852 -3.8949
42 1 5.8269 -1.0697 -4.7573
43 1 6.4869 -2.1250 -6.8607
44 1 6.2427 -7.0864 -7.4015
45 1 5.3626 -7.0602 -4.9327
46 1 4.9137 -4.9160 -3.1160
47 1 3.9353 0.3056 -1.1604
48 1 3.9400 -1.3146 -0.4172
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001568415192.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:56
Heat of formation + Delta-G solvation = 51.562248 kcal
Electronic energy + Delta-G solvation = -29929.241445 eV
Core-core repulsion = 25984.972191 eV
Total energy + Delta-G solvation = -3944.269254 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-43.89232 -41.51795 -39.31190 -38.03433 -36.98832 -34.94817 -34.51200 -33.15147
-32.02454 -31.14815 -29.88437 -29.73176 -26.80952 -26.11739 -25.11903 -24.08488
-24.04511 -22.82249 -22.34437 -21.11374 -20.39808 -19.27877 -19.04430 -18.35420
-17.50837 -17.25015 -16.93443 -16.74196 -16.31249 -15.83803 -15.68470 -15.53130
-15.51387 -15.29285 -15.01817 -14.61471 -14.40640 -14.23217 -14.06993 -13.91316
-13.81383 -13.44230 -13.00898 -12.93271 -12.85860 -12.74086 -12.52654 -12.39403
-12.23208 -12.13768 -11.94533 -11.75448 -11.65234 -11.42477 -11.26947 -11.21023
-11.01083 -10.88859 -9.97912 -9.67186 -8.97279 -8.96272 -7.90726 -5.18700
-0.48675 0.02217 1.21456 1.45652 1.48753 1.51409 1.54595 1.83576
1.99707 2.41357 2.57383 3.15286 3.27042 3.42841 3.49437 3.60203
3.72633 3.87302 3.87662 3.96952 4.12380 4.16620 4.29060 4.35059
4.38602 4.45366 4.46782 4.61240 4.65874 4.77258 4.79528 4.86740
4.89417 4.93241 4.94993 4.97339 5.04885 5.07141 5.18389 5.30045
5.32330 5.38977 5.48389 5.51370 5.57651 5.59144 5.65556 5.87385
6.30166 6.31004 6.75557 6.98016 7.36071 8.14524 8.35533 9.32645
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.016165 B = 0.002646 C = 0.002419
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1731.770037 B =10580.602217 C =11569.881765
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.172 3.828
3 H 0.050 0.950
4 N -0.737 5.737
5 C -0.231 4.231
6 H 0.078 0.922
7 C -0.080 4.080
8 N -0.972 5.972
9 Si 0.968 3.032
10 H -0.277 1.277
11 H -0.301 1.301
12 H -0.278 1.278
13 C -0.089 4.089
14 H 0.050 0.950
15 C -0.109 4.109
16 C -0.128 4.128
17 C 0.090 3.910
18 N -0.593 5.593
19 C 0.561 3.439
20 O -0.580 6.580
21 C -0.146 4.146
22 C -0.075 4.075
23 C -0.075 4.075
24 C 0.205 3.795
25 N -0.520 5.520
26 C 0.023 3.977
27 C -0.096 4.096
28 N -0.371 5.371
29 C 0.111 3.889
30 C 0.130 3.870
31 H 0.035 0.965
32 H 0.033 0.967
33 H 0.081 0.919
34 H 0.368 0.632
35 H 0.247 0.753
36 H 0.081 0.919
37 H 0.079 0.921
38 H 0.054 0.946
39 H 0.110 0.890
40 H 0.107 0.893
41 H 0.099 0.901
42 H 0.177 0.823
43 H 0.184 0.816
44 H 0.211 0.789
45 H 0.212 0.788
46 H 0.172 0.828
47 H 0.072 0.928
48 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.183 -0.258 -26.279 26.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.064 3.936
3 H 0.068 0.932
4 N -0.377 5.377
5 C -0.363 4.363
6 H 0.096 0.904
7 C -0.272 4.272
8 N -0.623 5.623
9 Si 0.798 3.202
10 H -0.203 1.203
11 H -0.228 1.228
12 H -0.204 1.204
13 C -0.109 4.109
14 H 0.068 0.932
15 C -0.147 4.147
16 C -0.166 4.166
17 C -0.031 4.031
18 N -0.323 5.323
19 C 0.349 3.651
20 O -0.461 6.461
21 C -0.153 4.153
22 C -0.098 4.098
23 C -0.094 4.094
24 C -0.038 4.038
25 N -0.241 5.241
26 C -0.126 4.126
27 C -0.225 4.225
28 N -0.043 5.043
29 C -0.014 4.014
30 C 0.008 3.992
31 H 0.054 0.946
32 H 0.052 0.948
33 H 0.100 0.900
34 H 0.199 0.801
35 H 0.056 0.944
36 H 0.099 0.901
37 H 0.098 0.902
38 H 0.073 0.927
39 H 0.128 0.872
40 H 0.125 0.875
41 H 0.118 0.882
42 H 0.194 0.806
43 H 0.201 0.799
44 H 0.228 0.772
45 H 0.229 0.771
46 H 0.189 0.811
47 H 0.090 0.910
48 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 1.693 -0.156 -26.389 26.444
hybrid contribution -0.038 -0.834 2.614 2.744
sum 1.655 -0.990 -23.776 23.854
Atomic orbital electron populations
1.22330 0.97551 1.00507 1.01008 1.20480 0.92896 0.95120 0.85092
0.93238 1.42680 1.78364 1.10150 1.06481 1.19567 1.34347 0.94111
0.88277 0.90448 1.25536 1.03390 0.96801 1.01483 1.69835 1.52888
1.10372 1.29216 0.85281 0.77957 0.77288 0.79689 1.20302 1.22752
1.20427 1.21602 0.93571 0.99648 0.96129 0.93162 1.21628 1.01745
0.99466 0.91869 1.21920 0.94381 1.01166 0.99144 1.22449 0.95364
1.00895 0.84359 1.48133 1.42607 1.32740 1.08857 1.18264 0.79048
0.79897 0.87912 1.90893 1.56077 1.64358 1.34734 1.19179 1.07602
0.92747 0.95744 1.21279 0.96856 1.01720 0.89974 1.20491 1.00722
0.88268 0.99966 1.21651 1.02790 0.95007 0.84365 1.70733 1.24389
1.02111 1.26852 1.23116 0.99907 0.95649 0.93951 1.23413 1.14415
0.85132 0.99581 1.42913 1.41507 1.09065 1.10836 1.21545 0.97717
0.93896 0.88224 1.21429 0.94657 0.98220 0.84912 0.94619 0.94801
0.90050 0.80096 0.94404 0.90061 0.90194 0.92696 0.87158 0.87544
0.88245 0.80608 0.79853 0.77212 0.77097 0.81082 0.90994 0.92871
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.08 9.14 71.98 0.66 -4.42 16
2 C 0.17 6.36 2.47 44.99 0.11 6.47 16
3 H 0.05 1.81 8.08 -2.38 -0.02 1.80 16
4 N -0.74 -36.98 4.52 -322.94 -1.46 -38.44 16
5 C -0.23 -12.82 9.93 84.03 0.83 -11.99 16
6 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16
7 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16
8 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16
9 Si 0.97 47.25 29.55 68.60 2.03 49.28 16
10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
11 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16
12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16
13 C -0.09 -2.67 1.97 -10.71 -0.02 -2.70 16
14 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
15 C -0.11 -2.08 4.85 30.62 0.15 -1.93 16
16 C -0.13 -1.84 6.08 30.67 0.19 -1.65 16
17 C 0.09 1.34 5.38 86.36 0.46 1.80 16
18 N -0.59 -15.26 2.97 -822.60 -2.44 -17.71 16
19 C 0.56 16.84 7.21 86.71 0.63 17.46 16
20 O -0.58 -24.29 16.46 -4.02 -0.07 -24.36 16
21 C -0.15 -3.23 4.95 -20.35 -0.10 -3.33 16
22 C -0.07 -1.13 7.37 22.54 0.17 -0.97 16
23 C -0.07 -1.15 10.09 22.39 0.23 -0.92 16
24 C 0.21 4.37 7.81 134.16 1.05 5.42 16
25 N -0.52 -11.83 11.31 -194.16 -2.20 -14.03 16
26 C 0.02 0.40 11.82 83.68 0.99 1.39 16
27 C -0.10 -1.62 11.75 83.14 0.98 -0.64 16
28 N -0.37 -7.68 2.93 -351.04 -1.03 -8.71 16
29 C 0.11 2.43 10.58 83.66 0.89 3.31 16
30 C 0.13 4.31 5.46 86.36 0.47 4.78 16
31 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16
32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16
33 H 0.08 1.98 6.40 -2.39 -0.02 1.97 16
34 H 0.37 20.62 7.62 -92.70 -0.71 19.91 16
35 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16
36 H 0.08 1.42 6.36 -2.39 -0.02 1.41 16
37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16
40 H 0.11 1.24 4.55 -2.38 -0.01 1.23 16
41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16
42 H 0.18 1.66 7.11 -2.91 -0.02 1.64 16
43 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16
44 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16
45 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16
46 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16
47 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16
48 H 0.05 2.38 6.54 -2.39 -0.02 2.37 16
Total: -1.00 -81.02 384.67 3.52 -77.50
By element:
Atomic # 1 Polarization: 29.92 SS G_CDS: 0.27 Total: 30.19 kcal
Atomic # 6 Polarization: -0.29 SS G_CDS: 8.14 Total: 7.85 kcal
Atomic # 7 Polarization: -133.62 SS G_CDS: -6.85 Total: -140.46 kcal
Atomic # 8 Polarization: -24.29 SS G_CDS: -0.07 Total: -24.36 kcal
Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal
Total: -81.02 3.52 -77.50 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568415192.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.060 kcal
(2) G-P(sol) polarization free energy of solvation -81.021 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.039 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.498 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.562 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds