Wall clock time and date at job start Sat Apr 11 2020 06:43:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.36119 * 126.30851 * 2 1
4 4 N 1.30090 * 110.03907 * 180.02562 * 3 2 1
5 5 C 1.35852 * 109.53545 * 0.02562 * 4 3 2
6 6 C 1.39725 * 133.50237 * 179.71435 * 5 4 3
7 7 C 1.37837 * 120.10114 * 179.89049 * 6 5 4
8 8 C 1.38327 * 120.73032 * 0.40735 * 7 6 5
9 9 C 1.39403 * 120.28254 * 359.81296 * 8 7 6
10 10 C 1.47524 * 120.24836 * 179.97438 * 9 8 7
11 11 O 1.21584 * 120.00104 * 141.11127 * 10 9 8
12 12 N 1.34773 * 119.99822 * 321.10930 * 10 9 8
13 13 C 1.46504 * 120.00071 * 180.02562 * 12 10 9
14 14 C 1.52995 * 109.47199 * 275.00244 * 13 12 10
15 15 C 1.53007 * 109.47209 * 179.97438 * 14 13 12
16 16 C 1.52999 * 109.46912 * 59.99860 * 15 14 13
17 17 N 1.46502 * 109.46939 * 180.02562 * 16 15 14
18 18 C 1.36944 * 119.99664 * 274.99898 * 17 16 15
19 19 H 1.08000 * 120.00050 * 359.97438 * 18 17 16
20 20 C 1.38811 * 119.99833 * 180.02562 * 18 17 16
21 21 N 1.31621 * 120.00194 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 119.99986 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47252 * 89.99702 * 22 20 18
24 24 H 1.48495 * 109.47109 * 209.99775 * 22 20 18
25 25 H 1.48498 * 109.46969 * 329.99798 * 22 20 18
26 26 C 1.53002 * 109.47069 * 299.99920 * 16 15 14
27 27 C 1.52996 * 109.46933 * 60.00444 * 26 16 15
28 28 C 1.37514 * 126.30997 * 180.02562 * 2 1 3
29 29 H 1.09005 * 109.46723 * 264.22087 * 1 2 3
30 30 H 1.08993 * 109.47115 * 24.22288 * 1 2 3
31 31 H 1.09000 * 109.47404 * 144.22653 * 1 2 3
32 32 H 1.07998 * 124.97639 * 359.96915 * 3 2 1
33 33 H 1.08002 * 119.94469 * 0.28998 * 6 5 4
34 34 H 1.07998 * 119.63451 * 180.19537 * 7 6 5
35 35 H 1.08000 * 119.85978 * 179.79622 * 8 7 6
36 36 H 0.97005 * 120.00470 * 0.02562 * 12 10 9
37 37 H 1.08999 * 109.46806 * 34.99851 * 13 12 10
38 38 H 1.09007 * 109.47137 * 299.99358 * 14 13 12
39 39 H 1.09001 * 109.47653 * 59.99887 * 14 13 12
40 40 H 1.08999 * 109.46944 * 299.99698 * 15 14 13
41 41 H 1.08995 * 109.46892 * 179.97438 * 15 14 13
42 42 H 1.08999 * 109.47448 * 60.00147 * 16 15 14
43 43 H 0.96998 * 120.00517 * 94.99715 * 17 16 15
44 44 H 0.96997 * 120.00047 * 180.02562 * 21 20 18
45 45 H 1.08999 * 109.47171 * 300.00397 * 26 16 15
46 46 H 1.09006 * 109.46769 * 180.02562 * 26 16 15
47 47 H 1.08998 * 109.47112 * 179.97438 * 27 26 16
48 48 H 1.08999 * 109.47231 * 59.99989 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2710 1.0969 0.0000
4 7 3.5198 0.7324 -0.0005
5 6 3.5972 -0.6239 -0.0015
6 6 4.6639 -1.5264 -0.0074
7 6 4.4213 -2.8833 -0.0044
8 6 3.1265 -3.3699 -0.0040
9 6 2.0450 -2.4903 -0.0027
10 6 0.6643 -3.0100 -0.0029
11 8 -0.1932 -2.4580 0.6590
12 7 0.3536 -4.0969 -0.7368
13 6 -1.0176 -4.6128 -0.7374
14 6 -1.2118 -5.5463 0.4591
15 6 -2.6441 -6.0846 0.4588
16 6 -2.8984 -6.8569 -0.8373
17 7 -4.2699 -7.3718 -0.8378
18 6 -4.5540 -8.5637 -0.2263
19 1 -3.7669 -9.1242 0.2561
20 6 -5.8535 -9.0518 -0.2272
21 7 -6.8126 -8.3689 -0.8155
22 14 -6.2412 -10.6773 0.6076
23 1 -6.5989 -10.4315 2.0277
24 1 -7.3817 -11.3295 -0.0844
25 1 -5.0511 -11.5631 0.5432
26 6 -2.7042 -5.9232 -2.0338
27 6 -1.2720 -5.3851 -2.0335
28 6 2.2793 -1.1081 -0.0005
29 1 -0.3633 -0.1035 1.0225
30 1 -0.3633 0.9371 -0.4216
31 1 -0.3634 -0.8338 -0.6007
32 1 1.9245 2.1198 -0.0005
33 1 5.6799 -1.1602 -0.0078
34 1 5.2514 -3.5741 -0.0059
35 1 2.9526 -4.4358 -0.0050
36 1 1.0378 -4.5376 -1.2646
37 1 -1.7187 -3.7811 -0.6669
38 1 -0.5108 -6.3780 0.3885
39 1 -1.0311 -4.9961 1.3825
40 1 -3.3449 -5.2527 0.5295
41 1 -2.7823 -6.7500 1.3109
42 1 -2.1976 -7.6888 -0.9081
43 1 -4.9768 -6.8685 -1.2713
44 1 -7.7207 -8.7099 -0.8158
45 1 -3.4049 -5.0914 -1.9630
46 1 -2.8858 -6.4734 -2.9571
47 1 -1.1335 -4.7203 -2.8861
48 1 -0.5712 -6.2169 -2.1042
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001026517509.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:32
Heat of formation + Delta-G solvation = 41.658198 kcal
Electronic energy + Delta-G solvation = -29383.777131 eV
Core-core repulsion = 25439.078405 eV
Total energy + Delta-G solvation = -3944.698726 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.81 seconds
Orbital eigenvalues (eV)
-42.54610 -40.10938 -38.13930 -37.40735 -34.97264 -34.33209 -33.13069 -31.32733
-30.47909 -30.39979 -29.73128 -27.55205 -27.06248 -24.46424 -23.53743 -22.53916
-22.48697 -22.08265 -20.88011 -20.25251 -19.43406 -17.94678 -17.54933 -17.06273
-16.82379 -16.32751 -16.07806 -15.70397 -15.25121 -15.07802 -14.44518 -14.24325
-14.04811 -13.91483 -13.77307 -13.59989 -13.44390 -13.14033 -12.80997 -12.57248
-12.37099 -12.21141 -12.04855 -11.87726 -11.83458 -11.47340 -11.08297 -10.84802
-10.81329 -10.73244 -10.65631 -10.59208 -10.19800 -10.15192 -9.91950 -9.78925
-9.60173 -9.06097 -8.86973 -8.74512 -8.44038 -6.95870 -5.77072 -3.05646
0.31578 1.13611 2.18794 2.34498 2.73426 2.98593 3.42781 3.47966
3.49458 3.50928 3.89646 4.19309 4.46543 4.50405 4.58370 4.59071
4.82811 4.92853 4.98445 5.00378 5.05780 5.11177 5.22654 5.31740
5.43775 5.49245 5.55426 5.64039 5.68216 5.69667 5.79319 5.82967
5.94082 5.99530 6.02344 6.11903 6.19446 6.20057 6.25405 6.40801
6.44009 6.51976 6.59849 6.68889 6.76692 6.95790 7.11953 7.32754
7.49122 7.69585 8.00088 8.41828 9.52773 10.11133 10.45494 11.45673
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.025277 B = 0.002068 C = 0.001995
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1107.468399 B =13538.275634 C =14030.733881
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.084 3.916
2 N -0.483 5.483
3 C 0.259 3.741
4 N -0.496 5.496
5 C 0.036 3.964
6 C -0.041 4.041
7 C -0.137 4.137
8 C -0.067 4.067
9 C -0.123 4.123
10 C 0.557 3.443
11 O -0.536 6.536
12 N -0.716 5.716
13 C 0.145 3.855
14 C -0.123 4.123
15 C -0.132 4.132
16 C 0.177 3.823
17 N -0.726 5.726
18 C -0.237 4.237
19 H 0.070 0.930
20 C -0.015 4.015
21 N -0.933 5.933
22 Si 0.906 3.094
23 H -0.290 1.290
24 H -0.292 1.292
25 H -0.282 1.282
26 C -0.120 4.120
27 C -0.119 4.119
28 C 0.091 3.909
29 H 0.085 0.915
30 H 0.081 0.919
31 H 0.089 0.911
32 H 0.216 0.784
33 H 0.133 0.867
34 H 0.137 0.863
35 H 0.136 0.864
36 H 0.399 0.601
37 H 0.087 0.913
38 H 0.059 0.941
39 H 0.058 0.942
40 H 0.056 0.944
41 H 0.064 0.936
42 H 0.046 0.954
43 H 0.383 0.617
44 H 0.255 0.745
45 H 0.061 0.939
46 H 0.068 0.932
47 H 0.062 0.938
48 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.250 16.684 -1.869 27.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 N -0.171 5.171
3 C -0.027 4.027
4 N -0.215 5.215
5 C -0.082 4.082
6 C -0.060 4.060
7 C -0.157 4.157
8 C -0.087 4.087
9 C -0.129 4.129
10 C 0.344 3.656
11 O -0.414 6.414
12 N -0.365 5.365
13 C 0.042 3.958
14 C -0.163 4.163
15 C -0.173 4.173
16 C 0.067 3.933
17 N -0.366 5.366
18 C -0.368 4.368
19 H 0.088 0.912
20 C -0.211 4.211
21 N -0.582 5.582
22 Si 0.737 3.263
23 H -0.218 1.218
24 H -0.218 1.218
25 H -0.208 1.208
26 C -0.159 4.159
27 C -0.158 4.158
28 C -0.021 4.021
29 H 0.104 0.896
30 H 0.099 0.901
31 H 0.108 0.892
32 H 0.232 0.768
33 H 0.151 0.849
34 H 0.154 0.846
35 H 0.154 0.846
36 H 0.234 0.766
37 H 0.105 0.895
38 H 0.078 0.922
39 H 0.077 0.923
40 H 0.075 0.925
41 H 0.082 0.918
42 H 0.064 0.936
43 H 0.217 0.783
44 H 0.065 0.935
45 H 0.080 0.920
46 H 0.087 0.913
47 H 0.081 0.919
48 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 22.127 17.432 -1.335 28.201
hybrid contribution -1.011 -1.370 0.230 1.718
sum 21.117 16.062 -1.104 26.554
Atomic orbital electron populations
1.22243 0.74657 1.03786 1.05066 1.45301 1.08173 1.05120 1.58487
1.25436 0.85118 0.93552 0.98548 1.70519 1.18341 1.10471 1.22160
1.19041 0.91775 0.90466 1.06959 1.20450 0.97567 0.91439 0.96559
1.20829 0.96758 0.94770 1.03386 1.21135 0.91410 0.99073 0.97075
1.18834 0.93914 0.89953 1.10228 1.18185 0.87520 0.80293 0.79639
1.90792 1.49801 1.58767 1.42078 1.46156 1.12678 1.29584 1.48117
1.21155 0.81740 0.96851 0.96059 1.21899 0.98958 0.98194 0.97219
1.22226 0.93445 1.00171 1.01435 1.20238 0.88592 0.93407 0.91032
1.42432 1.03685 1.23766 1.66703 1.19237 0.93219 0.96800 1.27556
0.91231 1.24743 0.95952 0.98969 1.01416 1.69659 1.00583 1.39216
1.48737 0.86209 0.77571 0.83556 0.78985 1.21759 1.21810 1.20791
1.21752 0.94289 0.99692 1.00166 1.21752 0.98850 0.99404 0.95749
1.18565 0.91295 0.88183 1.04099 0.89606 0.90072 0.89200 0.76793
0.84881 0.84558 0.84594 0.76627 0.89453 0.92229 0.92338 0.92533
0.91774 0.93583 0.78317 0.93546 0.92010 0.91310 0.91909 0.91461
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.73 9.34 59.85 0.56 1.29 16
2 N -0.48 -4.93 3.19 -122.94 -0.39 -5.32 16
3 C 0.26 2.30 12.50 -89.72 -1.12 1.18 16
4 N -0.50 -5.70 11.28 -12.05 -0.14 -5.84 16
5 C 0.04 0.41 7.22 -84.71 -0.61 -0.20 16
6 C -0.04 -0.36 10.09 -39.17 -0.40 -0.76 16
7 C -0.14 -1.00 9.99 -39.70 -0.40 -1.40 16
8 C -0.07 -0.55 9.33 -39.12 -0.36 -0.91 16
9 C -0.12 -1.34 5.77 -104.95 -0.61 -1.94 16
10 C 0.56 6.66 6.64 -12.48 -0.08 6.58 16
11 O -0.54 -7.89 12.80 5.29 0.07 -7.82 16
12 N -0.72 -7.29 5.00 -54.85 -0.27 -7.56 16
13 C 0.15 1.78 2.45 -67.93 -0.17 1.61 16
14 C -0.12 -1.74 5.49 -26.73 -0.15 -1.89 16
15 C -0.13 -2.32 5.50 -26.73 -0.15 -2.47 16
16 C 0.18 3.35 2.77 -67.93 -0.19 3.16 16
17 N -0.73 -17.82 5.12 -53.42 -0.27 -18.10 16
18 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16
19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16
20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16
21 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16
22 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16
23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
26 C -0.12 -1.84 5.39 -26.73 -0.14 -1.98 16
27 C -0.12 -1.38 5.39 -26.73 -0.14 -1.52 16
28 C 0.09 1.07 6.74 -83.77 -0.56 0.50 16
29 H 0.09 0.83 7.71 -51.93 -0.40 0.43 16
30 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16
31 H 0.09 0.94 5.99 -51.93 -0.31 0.63 16
32 H 0.22 0.89 8.06 -52.49 -0.42 0.46 16
33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16
34 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16
35 H 0.14 0.80 7.79 -52.49 -0.41 0.40 16
36 H 0.40 3.03 7.97 -40.82 -0.33 2.70 16
37 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16
38 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16
39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16
41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
42 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16
43 H 0.38 10.04 7.80 -40.82 -0.32 9.72 16
44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16
45 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16
46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
LS Contribution 387.84 15.07 5.84 5.84
Total: -1.00 -34.40 387.84 -11.42 -45.82
By element:
Atomic # 1 Polarization: 16.13 SS G_CDS: -7.20 Total: 8.94 kcal
Atomic # 6 Polarization: -1.14 SS G_CDS: -4.77 Total: -5.90 kcal
Atomic # 7 Polarization: -63.82 SS G_CDS: -0.35 Total: -64.17 kcal
Atomic # 8 Polarization: -7.89 SS G_CDS: 0.07 Total: -7.82 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -34.40 -11.42 -45.82 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026517509.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.479 kcal
(2) G-P(sol) polarization free energy of solvation -34.397 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.082 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.424 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.821 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.658 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.81 seconds