Wall clock time and date at job start Sat Apr 11 2020 06:43:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.36119 * 126.30851 * 2 1
4 4 N 1.30090 * 110.03907 * 180.02562 * 3 2 1
5 5 C 1.35852 * 109.53545 * 0.02562 * 4 3 2
6 6 C 1.39725 * 133.50237 * 179.71435 * 5 4 3
7 7 C 1.37837 * 120.10114 * 179.89049 * 6 5 4
8 8 C 1.38327 * 120.73032 * 0.40735 * 7 6 5
9 9 C 1.39403 * 120.28254 * 359.81296 * 8 7 6
10 10 C 1.47524 * 120.24836 * 179.97438 * 9 8 7
11 11 O 1.21584 * 120.00104 * 141.11127 * 10 9 8
12 12 N 1.34773 * 119.99822 * 321.10930 * 10 9 8
13 13 C 1.46504 * 120.00071 * 180.02562 * 12 10 9
14 14 C 1.52995 * 109.47199 * 275.00244 * 13 12 10
15 15 C 1.53007 * 109.47209 * 179.97438 * 14 13 12
16 16 C 1.52999 * 109.46912 * 59.99860 * 15 14 13
17 17 N 1.46502 * 109.46939 * 180.02562 * 16 15 14
18 18 C 1.36944 * 119.99664 * 274.99898 * 17 16 15
19 19 H 1.08000 * 120.00050 * 359.97438 * 18 17 16
20 20 C 1.38811 * 119.99833 * 180.02562 * 18 17 16
21 21 N 1.31621 * 120.00194 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 119.99986 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47252 * 89.99702 * 22 20 18
24 24 H 1.48495 * 109.47109 * 209.99775 * 22 20 18
25 25 H 1.48498 * 109.46969 * 329.99798 * 22 20 18
26 26 C 1.53002 * 109.47069 * 299.99920 * 16 15 14
27 27 C 1.52996 * 109.46933 * 60.00444 * 26 16 15
28 28 C 1.37514 * 126.30997 * 180.02562 * 2 1 3
29 29 H 1.09005 * 109.46723 * 264.22087 * 1 2 3
30 30 H 1.08993 * 109.47115 * 24.22288 * 1 2 3
31 31 H 1.09000 * 109.47404 * 144.22653 * 1 2 3
32 32 H 1.07998 * 124.97639 * 359.96915 * 3 2 1
33 33 H 1.08002 * 119.94469 * 0.28998 * 6 5 4
34 34 H 1.07998 * 119.63451 * 180.19537 * 7 6 5
35 35 H 1.08000 * 119.85978 * 179.79622 * 8 7 6
36 36 H 0.97005 * 120.00470 * 0.02562 * 12 10 9
37 37 H 1.08999 * 109.46806 * 34.99851 * 13 12 10
38 38 H 1.09007 * 109.47137 * 299.99358 * 14 13 12
39 39 H 1.09001 * 109.47653 * 59.99887 * 14 13 12
40 40 H 1.08999 * 109.46944 * 299.99698 * 15 14 13
41 41 H 1.08995 * 109.46892 * 179.97438 * 15 14 13
42 42 H 1.08999 * 109.47448 * 60.00147 * 16 15 14
43 43 H 0.96998 * 120.00517 * 94.99715 * 17 16 15
44 44 H 0.96997 * 120.00047 * 180.02562 * 21 20 18
45 45 H 1.08999 * 109.47171 * 300.00397 * 26 16 15
46 46 H 1.09006 * 109.46769 * 180.02562 * 26 16 15
47 47 H 1.08998 * 109.47112 * 179.97438 * 27 26 16
48 48 H 1.08999 * 109.47231 * 59.99989 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2710 1.0969 0.0000
4 7 3.5198 0.7324 -0.0005
5 6 3.5972 -0.6239 -0.0015
6 6 4.6639 -1.5264 -0.0074
7 6 4.4213 -2.8833 -0.0044
8 6 3.1265 -3.3699 -0.0040
9 6 2.0450 -2.4903 -0.0027
10 6 0.6643 -3.0100 -0.0029
11 8 -0.1932 -2.4580 0.6590
12 7 0.3536 -4.0969 -0.7368
13 6 -1.0176 -4.6128 -0.7374
14 6 -1.2118 -5.5463 0.4591
15 6 -2.6441 -6.0846 0.4588
16 6 -2.8984 -6.8569 -0.8373
17 7 -4.2699 -7.3718 -0.8378
18 6 -4.5540 -8.5637 -0.2263
19 1 -3.7669 -9.1242 0.2561
20 6 -5.8535 -9.0518 -0.2272
21 7 -6.8126 -8.3689 -0.8155
22 14 -6.2412 -10.6773 0.6076
23 1 -6.5989 -10.4315 2.0277
24 1 -7.3817 -11.3295 -0.0844
25 1 -5.0511 -11.5631 0.5432
26 6 -2.7042 -5.9232 -2.0338
27 6 -1.2720 -5.3851 -2.0335
28 6 2.2793 -1.1081 -0.0005
29 1 -0.3633 -0.1035 1.0225
30 1 -0.3633 0.9371 -0.4216
31 1 -0.3634 -0.8338 -0.6007
32 1 1.9245 2.1198 -0.0005
33 1 5.6799 -1.1602 -0.0078
34 1 5.2514 -3.5741 -0.0059
35 1 2.9526 -4.4358 -0.0050
36 1 1.0378 -4.5376 -1.2646
37 1 -1.7187 -3.7811 -0.6669
38 1 -0.5108 -6.3780 0.3885
39 1 -1.0311 -4.9961 1.3825
40 1 -3.3449 -5.2527 0.5295
41 1 -2.7823 -6.7500 1.3109
42 1 -2.1976 -7.6888 -0.9081
43 1 -4.9768 -6.8685 -1.2713
44 1 -7.7207 -8.7099 -0.8158
45 1 -3.4049 -5.0914 -1.9630
46 1 -2.8858 -6.4734 -2.9571
47 1 -1.1335 -4.7203 -2.8861
48 1 -0.5712 -6.2169 -2.1042
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001026517509.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:31
Heat of formation + Delta-G solvation = 20.286755 kcal
Electronic energy + Delta-G solvation = -29384.703866 eV
Core-core repulsion = 25439.078405 eV
Total energy + Delta-G solvation = -3945.625461 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.67 seconds
Orbital eigenvalues (eV)
-43.23986 -41.07641 -39.33967 -38.12533 -36.40546 -35.06631 -34.67174 -32.65701
-31.69904 -31.58125 -30.45190 -28.89689 -27.87749 -25.77587 -24.86462 -23.66943
-23.21208 -23.09661 -22.03858 -21.25716 -20.63205 -19.16532 -18.60376 -18.26043
-17.58977 -17.26200 -16.94497 -16.77627 -16.41240 -16.04394 -15.78085 -15.37874
-15.24922 -15.03617 -14.94189 -14.62564 -14.57078 -14.16302 -14.01863 -13.55775
-13.34299 -13.17091 -13.09274 -12.98645 -12.86368 -12.78248 -12.58391 -12.41136
-12.29236 -12.12016 -12.03267 -11.67323 -11.48890 -11.41373 -11.37978 -11.20381
-10.85690 -10.73845 -10.05645 -9.42711 -9.15057 -8.99074 -7.93456 -5.21367
-0.37065 0.45602 1.44078 1.46720 1.48277 1.56391 1.69281 1.92681
2.10130 2.56663 2.80833 3.26693 3.39510 3.55621 3.71075 3.78983
3.86983 3.88186 3.90903 4.01334 4.29076 4.32106 4.35422 4.37108
4.37716 4.39865 4.47031 4.53626 4.59634 4.65381 4.72506 4.76155
4.86789 4.99927 5.08717 5.10763 5.13919 5.25020 5.26283 5.29014
5.38729 5.45657 5.47412 5.52409 5.55511 5.64474 5.80190 6.12410
6.29552 6.50738 6.79313 7.15513 7.34941 8.12976 8.34772 9.30223
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.025277 B = 0.002068 C = 0.001995
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1107.468399 B =13538.275634 C =14030.733881
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.090 3.910
2 N -0.491 5.491
3 C 0.263 3.737
4 N -0.528 5.528
5 C 0.010 3.990
6 C -0.049 4.049
7 C -0.127 4.127
8 C -0.058 4.058
9 C -0.145 4.145
10 C 0.557 3.443
11 O -0.570 6.570
12 N -0.700 5.700
13 C 0.155 3.845
14 C -0.111 4.111
15 C -0.122 4.122
16 C 0.172 3.828
17 N -0.740 5.740
18 C -0.234 4.234
19 H 0.075 0.925
20 C -0.080 4.080
21 N -0.971 5.971
22 Si 0.970 3.030
23 H -0.291 1.291
24 H -0.296 1.296
25 H -0.268 1.268
26 C -0.113 4.113
27 C -0.106 4.106
28 C 0.064 3.936
29 H 0.069 0.931
30 H 0.116 0.884
31 H 0.070 0.930
32 H 0.256 0.744
33 H 0.148 0.852
34 H 0.172 0.828
35 H 0.163 0.837
36 H 0.416 0.584
37 H 0.067 0.933
38 H 0.077 0.923
39 H 0.047 0.953
40 H 0.038 0.962
41 H 0.039 0.961
42 H 0.048 0.952
43 H 0.371 0.629
44 H 0.250 0.750
45 H 0.053 0.947
46 H 0.066 0.934
47 H 0.086 0.914
48 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.059 16.318 -2.423 30.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 N -0.179 5.179
3 C -0.022 4.022
4 N -0.247 5.247
5 C -0.108 4.108
6 C -0.068 4.068
7 C -0.147 4.147
8 C -0.078 4.078
9 C -0.151 4.151
10 C 0.346 3.654
11 O -0.451 6.451
12 N -0.351 5.351
13 C 0.051 3.949
14 C -0.150 4.150
15 C -0.163 4.163
16 C 0.064 3.936
17 N -0.379 5.379
18 C -0.366 4.366
19 H 0.093 0.907
20 C -0.272 4.272
21 N -0.622 5.622
22 Si 0.799 3.201
23 H -0.218 1.218
24 H -0.223 1.223
25 H -0.192 1.192
26 C -0.151 4.151
27 C -0.144 4.144
28 C -0.049 4.049
29 H 0.088 0.912
30 H 0.134 0.866
31 H 0.088 0.912
32 H 0.271 0.729
33 H 0.166 0.834
34 H 0.190 0.810
35 H 0.180 0.820
36 H 0.254 0.746
37 H 0.086 0.914
38 H 0.096 0.904
39 H 0.066 0.934
40 H 0.057 0.943
41 H 0.058 0.942
42 H 0.066 0.934
43 H 0.203 0.797
44 H 0.058 0.942
45 H 0.071 0.929
46 H 0.085 0.915
47 H 0.105 0.895
48 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 25.020 17.054 -1.897 30.339
hybrid contribution -1.792 -1.202 0.427 2.199
sum 23.228 15.853 -1.470 28.160
Atomic orbital electron populations
1.22185 0.74205 1.04805 1.03928 1.45482 1.08532 1.05264 1.58612
1.26252 0.84462 0.94764 0.96699 1.70500 1.19718 1.10764 1.23738
1.19486 0.92519 0.90909 1.07906 1.20824 0.97829 0.92032 0.96133
1.21232 0.97451 0.94603 1.01448 1.21519 0.91056 1.00024 0.95170
1.18890 0.93757 0.90160 1.12305 1.18423 0.87808 0.80145 0.79074
1.90781 1.50923 1.59788 1.43570 1.45891 1.12116 1.29159 1.47919
1.20864 0.82617 0.95836 0.95603 1.21756 0.96567 0.98905 0.97803
1.22021 0.95690 0.98912 0.99688 1.20496 0.85749 0.94224 0.93099
1.42685 1.05683 1.23174 1.66347 1.19620 0.93289 0.97429 1.26290
0.90678 1.25545 0.96099 1.02511 1.03018 1.69816 1.00621 1.40960
1.50835 0.85187 0.77440 0.79914 0.77553 1.21808 1.22304 1.19230
1.21632 0.96875 0.98542 0.98101 1.21648 0.96433 1.00323 0.95997
1.18918 0.91883 0.88968 1.05099 0.91203 0.86579 0.91164 0.72862
0.83390 0.81018 0.81959 0.74642 0.91431 0.90418 0.93369 0.94265
0.94182 0.93392 0.79738 0.94167 0.92863 0.91506 0.89512 0.89293
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.56 9.34 127.77 1.19 2.75 16
2 N -0.49 -9.84 3.19 -542.87 -1.73 -11.57 16
3 C 0.26 4.43 12.50 180.03 2.25 6.68 16
4 N -0.53 -11.85 11.28 -192.03 -2.17 -14.01 16
5 C 0.01 0.21 7.22 39.41 0.28 0.50 16
6 C -0.05 -0.79 10.09 22.53 0.23 -0.56 16
7 C -0.13 -1.47 9.99 22.20 0.22 -1.25 16
8 C -0.06 -0.79 9.33 22.57 0.21 -0.58 16
9 C -0.14 -2.97 5.77 -20.07 -0.12 -3.08 16
10 C 0.56 12.82 6.64 86.69 0.58 13.40 16
11 O -0.57 -16.98 12.80 -3.98 -0.05 -17.03 16
12 N -0.70 -12.70 5.00 -445.72 -2.23 -14.93 16
13 C 0.16 3.55 2.45 44.99 0.11 3.66 16
14 C -0.11 -3.00 5.49 30.60 0.17 -2.83 16
15 C -0.12 -4.34 5.50 30.60 0.17 -4.17 16
16 C 0.17 6.46 2.77 44.99 0.12 6.59 16
17 N -0.74 -36.93 5.12 -322.93 -1.65 -38.59 16
18 C -0.23 -12.93 9.93 84.03 0.83 -12.10 16
19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16
20 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16
21 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16
22 Si 0.97 46.28 29.55 68.60 2.03 48.31 16
23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16
24 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16
25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16
26 C -0.11 -3.32 5.39 30.59 0.16 -3.16 16
27 C -0.11 -2.15 5.39 30.59 0.16 -1.98 16
28 C 0.06 1.46 6.74 39.25 0.26 1.73 16
29 H 0.07 1.41 7.71 -2.38 -0.02 1.40 16
30 H 0.12 1.09 8.13 -2.39 -0.02 1.07 16
31 H 0.07 1.50 5.99 -2.39 -0.01 1.49 16
32 H 0.26 1.58 8.06 -2.91 -0.02 1.56 16
33 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16
34 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16
35 H 0.16 1.25 7.79 -2.91 -0.02 1.23 16
36 H 0.42 4.82 7.97 -92.70 -0.74 4.09 16
37 H 0.07 1.87 7.58 -2.39 -0.02 1.85 16
38 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16
39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16
40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16
41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
42 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16
43 H 0.37 20.04 7.80 -92.71 -0.72 19.32 16
44 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16
45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
46 H 0.07 2.01 8.14 -2.38 -0.02 2.00 16
47 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16
48 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16
Total: -1.00 -77.85 387.84 1.32 -76.54
By element:
Atomic # 1 Polarization: 29.80 SS G_CDS: -0.47 Total: 29.33 kcal
Atomic # 6 Polarization: -5.86 SS G_CDS: 7.31 Total: 1.46 kcal
Atomic # 7 Polarization: -131.10 SS G_CDS: -7.50 Total: -138.60 kcal
Atomic # 8 Polarization: -16.98 SS G_CDS: -0.05 Total: -17.03 kcal
Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal
Total: -77.85 1.32 -76.54 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026517509.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.822 kcal
(2) G-P(sol) polarization free energy of solvation -77.855 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.967 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.535 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.287 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.68 seconds