Wall clock time and date at job start Sat Apr 11 2020 06:45:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46504 * 109.47052 * 2 1
4 4 C 1.34780 * 119.99828 * 83.04650 * 3 2 1
5 5 O 1.21615 * 120.00020 * 183.69495 * 4 3 2
6 6 C 1.47388 * 120.00271 * 3.97238 * 4 3 2
7 7 N 1.31579 * 126.82238 * 354.16360 * 6 4 3
8 8 N 1.28378 * 111.96660 * 179.87591 * 7 6 4
9 9 H 0.97001 * 124.37242 * 180.16981 * 8 7 6
10 10 C 1.37044 * 111.25650 * 0.41130 * 8 7 6
11 11 C 1.39124 * 134.72801 * 179.74445 * 10 8 7
12 12 C 1.36683 * 119.79091 * 180.02562 * 11 10 8
13 13 C 1.38905 * 120.88905 * 359.97438 * 12 11 10
14 14 C 1.50694 * 119.73417 * 180.02562 * 13 12 11
15 15 C 1.36710 * 120.52381 * 0.02562 * 13 12 11
16 16 C 1.39197 * 119.51529 * 359.97438 * 15 13 12
17 17 C 1.46500 * 119.99994 * 263.04501 * 3 2 1
18 18 H 1.08998 * 110.88605 * 356.11436 * 17 3 2
19 19 C 1.55149 * 111.00353 * 120.00131 * 17 3 2
20 20 C 1.54326 * 102.94370 * 153.57407 * 19 17 3
21 21 N 1.47023 * 107.27087 * 337.80988 * 20 19 17
22 22 C 1.36931 * 125.64865 * 178.98840 * 21 20 19
23 23 H 1.08003 * 120.00291 * 174.91966 * 22 21 20
24 24 C 1.38819 * 120.00045 * 354.91788 * 22 21 20
25 25 N 1.31614 * 119.99890 * 5.58087 * 24 22 21
26 26 Si 1.86800 * 119.99841 * 185.58470 * 24 22 21
27 27 H 1.48494 * 109.47002 * 94.99760 * 26 24 22
28 28 H 1.48504 * 109.46823 * 214.99430 * 26 24 22
29 29 H 1.48494 * 109.47337 * 334.99403 * 26 24 22
30 30 C 1.47423 * 108.70294 * 358.93558 * 21 20 19
31 31 H 1.08994 * 109.46905 * 179.97438 * 1 2 3
32 32 H 1.08993 * 109.47204 * 300.00127 * 1 2 3
33 33 H 1.09000 * 109.46760 * 60.00269 * 1 2 3
34 34 H 1.08999 * 109.47633 * 239.99783 * 2 1 3
35 35 H 1.09004 * 109.47231 * 119.99896 * 2 1 3
36 36 H 1.08002 * 120.10303 * 0.04060 * 11 10 8
37 37 H 1.07996 * 119.55477 * 179.97438 * 12 11 10
38 38 H 1.09001 * 109.47752 * 90.00191 * 14 13 12
39 39 H 1.09005 * 109.47158 * 209.99804 * 14 13 12
40 40 H 1.08999 * 109.47656 * 329.99224 * 14 13 12
41 41 H 1.08003 * 120.24371 * 179.97438 * 15 13 12
42 42 H 1.08996 * 110.71994 * 271.93869 * 19 17 3
43 43 H 1.09004 * 110.72394 * 35.21074 * 19 17 3
44 44 H 1.09002 * 109.88085 * 97.22385 * 20 19 17
45 45 H 1.08999 * 109.88303 * 218.38696 * 20 19 17
46 46 H 0.97001 * 120.00202 * 180.02562 * 25 24 22
47 47 H 1.09005 * 110.36777 * 265.29407 * 30 21 20
48 48 H 1.08990 * 110.37041 * 142.97258 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1097 2.0637 1.1587
5 8 2.4508 3.2310 1.1516
6 6 1.8022 1.3936 2.4349
7 7 1.3268 0.1768 2.5922
8 7 1.1674 -0.1201 3.8310
9 1 0.8299 -0.9712 4.1511
10 6 1.5308 0.9227 4.6425
11 6 1.5527 1.1315 6.0178
12 6 1.9871 2.3277 6.5163
13 6 2.4095 3.3428 5.6675
14 6 2.8839 4.6513 6.2452
15 6 2.3983 3.1643 4.3121
16 6 1.9597 1.9536 3.7836
17 6 2.4073 2.0207 -1.2594
18 1 2.3398 1.3173 -2.0894
19 6 1.5488 3.2843 -1.5299
20 6 2.4742 4.1487 -2.4120
21 7 3.8534 3.7030 -2.1654
22 6 4.9746 4.2054 -2.7701
23 1 5.9525 3.8671 -2.4608
24 6 4.8542 5.1495 -3.7806
25 7 3.6722 5.6431 -4.0827
26 14 6.3701 5.7192 -4.7118
27 1 6.5140 4.9235 -5.9573
28 1 6.2281 7.1567 -5.0564
29 1 7.5731 5.5304 -3.8620
30 6 3.8295 2.6266 -1.1584
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8899
33 1 -0.3633 0.5138 -0.8900
34 1 1.8934 -0.5138 -0.8899
35 1 1.8933 -0.5138 0.8900
36 1 1.2277 0.3506 6.6895
37 1 2.0021 2.4858 7.5845
38 1 3.9579 4.6012 6.4248
39 1 2.6702 5.4573 5.5431
40 1 2.3668 4.8421 7.1856
41 1 2.7273 3.9568 3.6563
42 1 0.6371 3.0234 -2.0673
43 1 1.3144 3.7982 -0.5976
44 1 2.2216 4.0083 -3.4630
45 1 2.3699 5.1992 -2.1407
46 1 3.5880 6.3025 -4.7891
47 1 3.9977 3.0354 -0.1620
48 1 4.5807 1.8722 -1.3915
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033888746.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:41
Heat of formation + Delta-G solvation = 97.754031 kcal
Electronic energy + Delta-G solvation = -30384.366697 eV
Core-core repulsion = 26442.100469 eV
Total energy + Delta-G solvation = -3942.266228 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-42.63494 -39.77156 -38.31111 -36.66510 -35.42205 -32.93561 -32.23894 -31.86120
-30.20749 -30.09935 -28.87114 -27.27258 -26.79630 -24.70981 -23.91321 -23.26213
-22.62713 -21.78289 -20.62120 -19.92954 -18.80924 -18.10501 -17.27494 -16.76475
-16.40017 -15.91734 -15.46711 -15.25445 -14.64363 -14.45361 -14.33343 -14.21675
-13.94410 -13.72005 -13.63502 -13.58608 -13.06364 -12.67624 -12.34405 -12.14144
-12.08601 -11.89828 -11.84084 -11.77397 -11.62594 -11.43141 -11.13512 -10.82573
-10.81023 -10.65721 -10.61020 -10.27798 -10.13254 -9.98069 -9.80369 -9.56921
-9.17430 -8.84785 -8.47911 -8.27769 -8.10371 -6.63892 -5.58340 -2.89878
0.67976 1.17172 1.85215 2.50451 3.15077 3.33427 3.48484 3.53277
3.55759 3.67469 4.16310 4.30840 4.54062 4.63049 4.68344 4.86973
5.06125 5.16272 5.21941 5.33815 5.36598 5.42926 5.50870 5.52958
5.57075 5.62926 5.71705 5.79465 5.83282 5.88248 5.92951 5.95625
6.00449 6.02365 6.20068 6.32720 6.37585 6.44936 6.61132 6.63355
6.70892 6.76602 6.85251 6.86881 7.31868 7.59744 7.70360 7.74536
7.82284 7.97207 8.39351 8.47017 9.35780 9.96385 10.64297 11.53568
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013725 B = 0.003074 C = 0.002646
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2039.581564 B = 9107.536250 C =10578.522750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.100 3.900
3 N -0.589 5.589
4 C 0.595 3.405
5 O -0.505 6.505
6 C 0.017 3.983
7 N -0.205 5.205
8 N -0.423 5.423
9 H 0.444 0.556
10 C 0.060 3.940
11 C -0.121 4.121
12 C -0.081 4.081
13 C -0.110 4.110
14 C -0.111 4.111
15 C -0.040 4.040
16 C -0.105 4.105
17 C 0.132 3.868
18 H 0.093 0.907
19 C -0.153 4.153
20 C 0.184 3.816
21 N -0.602 5.602
22 C -0.222 4.222
23 H 0.076 0.924
24 C -0.010 4.010
25 N -0.921 5.921
26 Si 0.910 3.090
27 H -0.290 1.290
28 H -0.292 1.292
29 H -0.282 1.282
30 C 0.125 3.875
31 H 0.060 0.940
32 H 0.054 0.946
33 H 0.055 0.945
34 H 0.076 0.924
35 H 0.095 0.905
36 H 0.126 0.874
37 H 0.129 0.871
38 H 0.070 0.930
39 H 0.070 0.930
40 H 0.065 0.935
41 H 0.141 0.859
42 H 0.054 0.946
43 H 0.075 0.925
44 H 0.047 0.953
45 H 0.039 0.961
46 H 0.250 0.750
47 H 0.046 0.954
48 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.496 -13.885 21.429 26.910
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.023 4.023
3 N -0.322 5.322
4 C 0.380 3.620
5 O -0.377 6.377
6 C -0.154 4.154
7 N -0.035 5.035
8 N -0.142 5.142
9 H 0.288 0.712
10 C -0.053 4.053
11 C -0.142 4.142
12 C -0.102 4.102
13 C -0.111 4.111
14 C -0.168 4.168
15 C -0.060 4.060
16 C -0.112 4.112
17 C 0.029 3.971
18 H 0.111 0.889
19 C -0.193 4.193
20 C 0.059 3.941
21 N -0.328 5.328
22 C -0.350 4.350
23 H 0.094 0.906
24 C -0.206 4.206
25 N -0.569 5.569
26 Si 0.741 3.259
27 H -0.218 1.218
28 H -0.218 1.218
29 H -0.207 1.207
30 C -0.002 4.002
31 H 0.079 0.921
32 H 0.073 0.927
33 H 0.074 0.926
34 H 0.094 0.906
35 H 0.113 0.887
36 H 0.144 0.856
37 H 0.147 0.853
38 H 0.089 0.911
39 H 0.089 0.911
40 H 0.084 0.916
41 H 0.159 0.841
42 H 0.073 0.927
43 H 0.093 0.907
44 H 0.065 0.935
45 H 0.058 0.942
46 H 0.061 0.939
47 H 0.064 0.936
48 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -8.577 -14.005 20.626 26.365
hybrid contribution 0.634 0.230 0.061 0.677
sum -7.943 -13.775 20.686 26.092
Atomic orbital electron populations
1.22082 0.96002 1.01569 1.02075 1.21847 0.94620 0.82327 1.03552
1.47827 1.63825 1.13972 1.06544 1.16722 0.78443 0.85650 0.81171
1.90857 1.46077 1.14959 1.85857 1.23021 1.06991 0.91248 0.94190
1.73153 1.13764 1.16233 1.00340 1.43148 1.54070 1.15087 1.01858
0.71164 1.19175 1.02976 0.89464 0.93704 1.19707 1.05233 0.98931
0.90379 1.20614 0.97704 0.92165 0.99731 1.19586 1.01630 0.96943
0.92985 1.20763 1.01312 0.93756 1.00971 1.20348 0.95652 0.95546
0.94492 1.19384 1.05327 0.95618 0.90870 1.22473 0.97170 0.94488
0.83012 0.88851 1.23245 0.98074 0.96474 1.01458 1.21068 0.81847
0.95303 0.95842 1.44320 1.03232 1.39110 1.46159 1.19060 0.85190
1.18577 1.12185 0.90566 1.24799 0.96835 0.99610 0.99332 1.69985
1.21126 1.32534 1.33255 0.86119 0.82098 0.77673 0.80051 1.21780
1.21847 1.20708 1.21893 0.92424 0.91060 0.94806 0.92067 0.92666
0.92622 0.90582 0.88681 0.85570 0.85276 0.91132 0.91136 0.91647
0.84115 0.92722 0.90667 0.93533 0.94243 0.93917 0.93629 0.94941
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.76 9.73 37.16 0.36 -1.40 16
2 C 0.10 1.23 5.73 -4.04 -0.02 1.21 16
3 N -0.59 -9.57 2.58 -164.94 -0.43 -9.99 16
4 C 0.60 10.51 6.89 -12.53 -0.09 10.42 16
5 O -0.50 -10.66 12.47 5.26 0.07 -10.60 16
6 C 0.02 0.25 6.80 -80.76 -0.55 -0.30 16
7 N -0.21 -2.43 7.42 34.46 0.26 -2.17 16
8 N -0.42 -3.88 6.85 32.34 0.22 -3.66 16
9 H 0.44 2.25 8.96 -190.49 -1.71 0.54 16
10 C 0.06 0.64 7.38 -84.21 -0.62 0.02 16
11 C -0.12 -1.02 10.03 -39.81 -0.40 -1.41 16
12 C -0.08 -0.69 9.60 -39.90 -0.38 -1.07 16
13 C -0.11 -1.15 5.85 -104.93 -0.61 -1.76 16
14 C -0.11 -0.91 9.99 36.00 0.36 -0.55 16
15 C -0.04 -0.54 9.50 -39.78 -0.38 -0.91 16
16 C -0.10 -1.46 6.34 -105.05 -0.67 -2.12 16
17 C 0.13 2.52 3.56 -65.78 -0.23 2.29 16
18 H 0.09 1.66 7.78 -51.93 -0.40 1.26 16
19 C -0.15 -3.23 6.33 -24.90 -0.16 -3.38 16
20 C 0.18 4.83 5.38 -3.06 -0.02 4.81 16
21 N -0.60 -16.51 3.39 -170.07 -0.58 -17.08 16
22 C -0.22 -6.52 10.27 -15.06 -0.15 -6.68 16
23 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16
24 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16
25 N -0.92 -28.18 10.35 55.49 0.57 -27.60 16
26 Si 0.91 22.94 29.56 -169.99 -5.02 17.91 16
27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16
29 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
30 C 0.13 2.88 6.58 -2.53 -0.02 2.87 16
31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.05 0.67 7.01 -51.93 -0.36 0.31 16
33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
34 H 0.08 0.84 7.80 -51.93 -0.40 0.44 16
35 H 0.10 1.11 5.40 -51.93 -0.28 0.83 16
36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16
37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16
38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16
40 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16
41 H 0.14 2.05 7.67 -52.48 -0.40 1.65 16
42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16
43 H 0.07 1.67 6.12 -51.93 -0.32 1.35 16
44 H 0.05 1.31 7.26 -51.93 -0.38 0.93 16
45 H 0.04 1.15 7.64 -51.93 -0.40 0.76 16
46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16
47 H 0.05 1.13 5.66 -51.93 -0.29 0.84 16
48 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
LS Contribution 379.80 15.07 5.72 5.72
Total: -1.00 -35.24 379.80 -11.15 -46.39
By element:
Atomic # 1 Polarization: 7.75 SS G_CDS: -8.29 Total: -0.55 kcal
Atomic # 6 Polarization: 5.30 SS G_CDS: -3.67 Total: 1.63 kcal
Atomic # 7 Polarization: -60.56 SS G_CDS: 0.05 Total: -60.51 kcal
Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.60 kcal
Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -35.24 -11.15 -46.39 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033888746.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.145 kcal
(2) G-P(sol) polarization free energy of solvation -35.238 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.391 kcal
(6) G-S(sol) free energy of system = (1) + (5) 97.754 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds