Wall clock time and date at job start Sat Apr 11 2020 06:45:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86800 * 120.00058 * 2 1
4 4 H 1.48499 * 109.47015 * 239.99890 * 3 2 1
5 5 H 1.48501 * 109.47145 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.47060 * 119.99730 * 3 2 1
7 7 C 1.38810 * 119.99791 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00165 * 163.08053 * 7 2 1
9 9 N 1.36946 * 120.00117 * 343.08068 * 7 2 1
10 10 C 1.46921 * 120.62835 * 331.84705 * 9 7 2
11 11 C 1.53187 * 108.77603 * 233.58634 * 10 9 7
12 12 C 1.53042 * 109.30990 * 305.36597 * 11 10 9
13 13 C 1.53005 * 109.46075 * 181.38246 * 12 11 10
14 14 N 1.46902 * 109.47129 * 174.99664 * 13 12 11
15 15 C 1.37723 * 110.99735 * 180.02562 * 14 13 12
16 16 C 1.38158 * 120.61156 * 180.02562 * 15 14 13
17 17 C 1.39223 * 119.21438 * 180.02562 * 16 15 14
18 18 N 1.31955 * 120.04523 * 359.97438 * 17 16 15
19 19 C 1.33687 * 121.44533 * 359.97438 * 18 17 16
20 20 N 1.32877 * 132.43601 * 180.02562 * 19 18 17
21 21 C 1.32732 * 109.75605 * 179.33723 * 20 19 18
22 22 N 1.31072 * 109.62053 * 0.55500 * 21 20 19
23 23 N 1.36475 * 120.61195 * 359.72384 * 15 14 13
24 24 C 1.51396 * 109.45855 * 179.97438 * 17 16 15
25 25 C 1.54337 * 105.25435 * 17.22288 * 24 17 16
26 26 C 1.51166 * 130.99660 * 0.03145 * 16 15 14
27 27 C 1.53041 * 109.53995 * 61.36472 * 12 11 10
28 28 C 1.46919 * 120.62791 * 151.82357 * 9 7 2
29 29 H 0.96999 * 119.99934 * 0.02562 * 1 2 3
30 30 H 1.09000 * 109.58471 * 113.79752 * 10 9 7
31 31 H 1.09004 * 109.70588 * 353.44071 * 10 9 7
32 32 H 1.09005 * 109.50295 * 185.41490 * 11 10 9
33 33 H 1.09001 * 109.50132 * 65.31576 * 11 10 9
34 34 H 1.08996 * 109.46111 * 301.33915 * 12 11 10
35 35 H 1.08998 * 109.47297 * 295.00579 * 13 12 11
36 36 H 1.09005 * 109.46720 * 55.00166 * 13 12 11
37 37 H 1.00904 * 110.99541 * 56.05388 * 14 13 12
38 38 H 1.07998 * 125.19102 * 180.08605 * 21 20 19
39 39 H 1.08996 * 110.29097 * 136.16890 * 24 17 16
40 40 H 1.09000 * 110.29084 * 258.18450 * 24 17 16
41 41 H 1.09001 * 110.79409 * 91.80881 * 25 24 17
42 42 H 1.08999 * 110.79098 * 215.08385 * 25 24 17
43 43 H 1.08998 * 110.31133 * 281.73412 * 26 16 15
44 44 H 1.09004 * 110.30259 * 43.89081 * 26 16 15
45 45 H 1.09000 * 109.49517 * 58.58291 * 27 12 11
46 46 H 1.08996 * 109.49647 * 178.68112 * 27 12 11
47 47 H 1.08998 * 109.58493 * 246.19967 * 28 9 7
48 48 H 1.08995 * 109.59005 * 6.48321 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1040 1.6963 -1.2125
5 1 1.2853 2.7465 0.0006
6 1 3.1040 1.6964 1.2126
7 6 2.0102 -1.2022 0.0005
8 1 3.0552 -1.2226 -0.2717
9 7 1.3699 -2.3623 0.3462
10 6 0.2259 -2.3399 1.2677
11 6 0.4970 -3.3189 2.4143
12 6 0.8116 -4.7006 1.8362
13 6 1.0492 -5.6895 2.9794
14 7 1.2326 -7.0392 2.4292
15 6 1.4486 -7.9563 3.4336
16 6 1.6469 -9.2910 3.1368
17 6 1.8622 -10.1933 4.1750
18 7 1.8758 -9.7710 5.4251
19 6 1.6866 -8.4828 5.7283
20 7 1.6568 -7.8288 6.8845
21 6 1.4470 -6.5369 6.6640
22 7 1.3249 -6.3243 5.3764
23 7 1.4769 -7.5626 4.7400
24 6 2.0509 -11.5829 3.6046
25 6 2.3651 -11.3686 2.1088
26 6 1.6788 -10.0182 1.8120
27 6 2.0671 -4.6173 0.9651
28 6 1.8137 -3.6529 -0.1979
29 1 -0.4850 0.8400 -0.0004
30 1 -0.6772 -2.6404 0.7364
31 1 0.0965 -1.3346 1.6687
32 1 -0.3836 -3.3838 3.0534
33 1 1.3467 -2.9675 2.9996
34 1 -0.0286 -5.0409 1.2309
35 1 1.9421 -5.3979 3.5323
36 1 0.1892 -5.6839 3.6492
37 1 1.9839 -7.0561 1.7559
38 1 1.3790 -5.7778 7.4292
39 1 2.8838 -12.0841 4.0977
40 1 1.1375 -12.1663 3.7205
41 1 3.4406 -11.3002 1.9452
42 1 1.9334 -12.1665 1.5046
43 1 0.6653 -10.1819 1.4457
44 1 2.2582 -9.4513 1.0832
45 1 2.9019 -4.2535 1.5640
46 1 2.3039 -5.6062 0.5727
47 1 1.0402 -4.0605 -0.8486
48 1 2.7331 -3.5131 -0.7663
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000865606141.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:14
Heat of formation + Delta-G solvation = 168.587697 kcal
Electronic energy + Delta-G solvation = -30093.785366 eV
Core-core repulsion = 26186.883467 eV
Total energy + Delta-G solvation = -3906.901899 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.186 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-43.15506 -40.07330 -38.68951 -36.95720 -35.81718 -33.89985 -32.53668 -31.29506
-30.57101 -30.01768 -29.53081 -27.94585 -26.56567 -24.50928 -23.95851 -22.85104
-22.42880 -21.70939 -21.11161 -20.97461 -19.18185 -18.52709 -17.86389 -17.40405
-16.94335 -16.61072 -15.86398 -15.44467 -14.91674 -14.79116 -14.33196 -14.20958
-13.66102 -13.58400 -13.55521 -13.48943 -13.22056 -13.05207 -12.87843 -12.79607
-12.33926 -12.27642 -12.01890 -11.73669 -11.69508 -11.37980 -11.34629 -10.99768
-10.75988 -10.67320 -10.35497 -10.32515 -10.16943 -10.13017 -9.99430 -9.88454
-9.58433 -9.55657 -9.46700 -8.49424 -8.22350 -6.70263 -5.81736 -3.24581
0.26337 0.53774 1.54826 2.36750 2.87381 3.14844 3.25026 3.35952
3.42029 3.43115 3.80299 4.08013 4.14767 4.46431 4.47150 4.55412
4.69433 4.89683 5.00227 5.03398 5.16536 5.18814 5.21861 5.30498
5.36782 5.38066 5.48247 5.54661 5.56327 5.63201 5.69661 5.71509
5.88137 5.94930 5.97184 6.08706 6.17593 6.26574 6.36135 6.39878
6.53496 6.57631 6.66287 6.74066 6.77309 6.91754 7.34304 7.34717
7.63252 7.76182 7.79533 8.42413 9.18548 9.81908 10.38651 11.26779
Molecular weight = 342.19amu
Principal moments of inertia in cm(-1)
A = 0.018026 B = 0.002591 C = 0.002354
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1552.925083 B =10804.372397 C =11891.151126
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.003 3.997
3 Si 0.902 3.098
4 H -0.282 1.282
5 H -0.290 1.290
6 H -0.284 1.284
7 C -0.255 4.255
8 H 0.064 0.936
9 N -0.592 5.592
10 C 0.173 3.827
11 C -0.130 4.130
12 C -0.079 4.079
13 C 0.057 3.943
14 N -0.598 5.598
15 C 0.419 3.581
16 C -0.258 4.258
17 C 0.246 3.754
18 N -0.489 5.489
19 C 0.473 3.527
20 N -0.537 5.537
21 C 0.250 3.750
22 N -0.334 5.334
23 N -0.351 5.351
24 C -0.071 4.071
25 C -0.117 4.117
26 C -0.049 4.049
27 C -0.131 4.131
28 C 0.148 3.852
29 H 0.255 0.745
30 H 0.017 0.983
31 H 0.088 0.912
32 H 0.050 0.950
33 H 0.055 0.945
34 H 0.073 0.927
35 H 0.067 0.933
36 H 0.092 0.908
37 H 0.382 0.618
38 H 0.230 0.770
39 H 0.097 0.903
40 H 0.104 0.896
41 H 0.080 0.920
42 H 0.090 0.910
43 H 0.088 0.912
44 H 0.080 0.920
45 H 0.057 0.943
46 H 0.043 0.957
47 H 0.018 0.982
48 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.326 -23.129 5.460 23.997
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.196 4.196
3 Si 0.732 3.268
4 H -0.209 1.209
5 H -0.216 1.216
6 H -0.210 1.210
7 C -0.384 4.384
8 H 0.082 0.918
9 N -0.315 5.315
10 C 0.047 3.953
11 C -0.170 4.170
12 C -0.099 4.099
13 C -0.069 4.069
14 N -0.229 5.229
15 C 0.198 3.802
16 C -0.271 4.271
17 C 0.085 3.915
18 N -0.208 5.208
19 C 0.112 3.888
20 N -0.271 5.271
21 C -0.051 4.051
22 N -0.165 5.165
23 N -0.136 5.136
24 C -0.109 4.109
25 C -0.155 4.155
26 C -0.087 4.087
27 C -0.170 4.170
28 C 0.021 3.979
29 H 0.065 0.935
30 H 0.035 0.965
31 H 0.106 0.894
32 H 0.068 0.932
33 H 0.074 0.926
34 H 0.091 0.909
35 H 0.085 0.915
36 H 0.110 0.890
37 H 0.216 0.784
38 H 0.247 0.753
39 H 0.115 0.885
40 H 0.122 0.878
41 H 0.098 0.902
42 H 0.109 0.891
43 H 0.106 0.894
44 H 0.098 0.902
45 H 0.076 0.924
46 H 0.062 0.938
47 H 0.035 0.965
48 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 2.597 -22.756 6.262 23.744
hybrid contribution 0.855 1.673 -0.357 1.913
sum 3.452 -21.082 5.905 22.164
Atomic orbital electron populations
1.70020 1.05266 1.25657 1.53740 1.25046 0.95286 0.98420 1.00816
0.86375 0.78934 0.83355 0.78130 1.20873 1.21587 1.21037 1.19132
0.92491 0.84874 1.41930 0.91826 1.44036 1.35898 1.01458 1.50063
1.20755 0.88574 0.98125 0.87874 1.22156 1.00264 0.94605 0.99973
1.21172 0.98826 0.94934 0.94925 1.22872 1.03597 0.83028 0.97416
1.57156 1.44198 1.08660 1.12929 1.19076 0.89550 0.92330 0.79273
1.20615 1.16382 0.89517 1.00554 1.22258 0.85670 0.97427 0.86177
1.67075 1.23398 1.09389 1.20967 1.22634 0.94773 0.86696 0.84680
1.70947 1.30736 1.04737 1.20684 1.26409 0.92448 0.92901 0.93366
1.78870 1.33036 0.96772 1.07819 1.49355 1.47431 1.09850 1.06932
1.21141 1.04381 0.90032 0.95311 1.22349 1.01703 0.97164 0.94275
1.20635 1.02227 0.94189 0.91645 1.22120 0.97167 0.98521 0.99234
1.20831 0.97598 0.86975 0.92458 0.93545 0.96462 0.89432 0.93168
0.92582 0.90893 0.91514 0.88997 0.78386 0.75348 0.88462 0.87768
0.90178 0.89139 0.89385 0.90193 0.92425 0.93813 0.96455 0.92879
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16
2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16
3 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16
4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16
5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
7 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16
8 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16
9 N -0.59 -14.56 2.99 -172.33 -0.52 -15.08 16
10 C 0.17 4.05 5.30 -3.72 -0.02 4.03 16
11 C -0.13 -2.44 5.36 -26.61 -0.14 -2.58 16
12 C -0.08 -1.26 2.36 -90.57 -0.21 -1.47 16
13 C 0.06 0.79 3.59 -3.82 -0.01 0.78 16
14 N -0.60 -6.93 6.42 -59.74 -0.38 -7.31 16
15 C 0.42 5.08 7.16 -153.00 -1.10 3.98 16
16 C -0.26 -2.47 6.11 -104.06 -0.64 -3.11 16
17 C 0.25 2.46 7.35 -81.83 -0.60 1.86 16
18 N -0.49 -6.70 10.46 -9.93 -0.10 -6.80 16
19 C 0.47 7.19 9.00 -323.26 -2.91 4.28 16
20 N -0.54 -8.20 11.26 -15.68 -0.18 -8.37 16
21 C 0.25 3.22 12.98 -91.96 -1.19 2.03 16
22 N -0.33 -4.80 8.60 29.26 0.25 -4.55 16
23 N -0.35 -5.01 3.73 -13.00 -0.05 -5.06 16
24 C -0.07 -0.38 6.76 -26.84 -0.18 -0.56 16
25 C -0.12 -0.43 7.07 -25.32 -0.18 -0.60 16
26 C -0.05 -0.28 6.70 -26.94 -0.18 -0.46 16
27 C -0.13 -2.08 5.16 -26.61 -0.14 -2.22 16
28 C 0.15 2.97 6.52 -3.72 -0.02 2.95 16
29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16
30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.09 2.32 6.07 -51.93 -0.31 2.01 16
32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
35 H 0.07 1.01 6.87 -51.93 -0.36 0.65 16
36 H 0.09 1.41 6.91 -51.93 -0.36 1.05 16
37 H 0.38 3.73 6.97 -39.29 -0.27 3.46 16
38 H 0.23 1.89 8.06 -52.49 -0.42 1.47 16
39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16
40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16
41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16
42 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16
43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
46 H 0.04 0.55 6.62 -51.93 -0.34 0.21 16
47 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16
48 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16
LS Contribution 374.78 15.07 5.65 5.65
Total: -1.00 -33.63 374.78 -14.60 -48.23
By element:
Atomic # 1 Polarization: 7.46 SS G_CDS: -7.10 Total: 0.36 kcal
Atomic # 6 Polarization: 9.59 SS G_CDS: -7.76 Total: 1.84 kcal
Atomic # 7 Polarization: -72.27 SS G_CDS: -0.36 Total: -72.63 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -33.63 -14.60 -48.23 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000865606141.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 216.815 kcal
(2) G-P(sol) polarization free energy of solvation -33.629 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.598 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.227 kcal
(6) G-S(sol) free energy of system = (1) + (5) 168.588 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds