Wall clock time and date at job start Sat Apr 11 2020 06:45:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86800 * 120.00058 * 2 1
4 4 H 1.48499 * 109.47015 * 239.99890 * 3 2 1
5 5 H 1.48501 * 109.47145 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.47060 * 119.99730 * 3 2 1
7 7 C 1.38810 * 119.99791 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00165 * 163.08053 * 7 2 1
9 9 N 1.36946 * 120.00117 * 343.08068 * 7 2 1
10 10 C 1.46921 * 120.62835 * 331.84705 * 9 7 2
11 11 C 1.53187 * 108.77603 * 233.58634 * 10 9 7
12 12 C 1.53042 * 109.30990 * 305.36597 * 11 10 9
13 13 C 1.53005 * 109.46075 * 181.38246 * 12 11 10
14 14 N 1.46902 * 109.47129 * 174.99664 * 13 12 11
15 15 C 1.37723 * 110.99735 * 180.02562 * 14 13 12
16 16 C 1.38158 * 120.61156 * 180.02562 * 15 14 13
17 17 C 1.39223 * 119.21438 * 180.02562 * 16 15 14
18 18 N 1.31955 * 120.04523 * 359.97438 * 17 16 15
19 19 C 1.33687 * 121.44533 * 359.97438 * 18 17 16
20 20 N 1.32877 * 132.43601 * 180.02562 * 19 18 17
21 21 C 1.32732 * 109.75605 * 179.33723 * 20 19 18
22 22 N 1.31072 * 109.62053 * 0.55500 * 21 20 19
23 23 N 1.36475 * 120.61195 * 359.72384 * 15 14 13
24 24 C 1.51396 * 109.45855 * 179.97438 * 17 16 15
25 25 C 1.54337 * 105.25435 * 17.22288 * 24 17 16
26 26 C 1.51166 * 130.99660 * 0.03145 * 16 15 14
27 27 C 1.53041 * 109.53995 * 61.36472 * 12 11 10
28 28 C 1.46919 * 120.62791 * 151.82357 * 9 7 2
29 29 H 0.96999 * 119.99934 * 0.02562 * 1 2 3
30 30 H 1.09000 * 109.58471 * 113.79752 * 10 9 7
31 31 H 1.09004 * 109.70588 * 353.44071 * 10 9 7
32 32 H 1.09005 * 109.50295 * 185.41490 * 11 10 9
33 33 H 1.09001 * 109.50132 * 65.31576 * 11 10 9
34 34 H 1.08996 * 109.46111 * 301.33915 * 12 11 10
35 35 H 1.08998 * 109.47297 * 295.00579 * 13 12 11
36 36 H 1.09005 * 109.46720 * 55.00166 * 13 12 11
37 37 H 1.00904 * 110.99541 * 56.05388 * 14 13 12
38 38 H 1.07998 * 125.19102 * 180.08605 * 21 20 19
39 39 H 1.08996 * 110.29097 * 136.16890 * 24 17 16
40 40 H 1.09000 * 110.29084 * 258.18450 * 24 17 16
41 41 H 1.09001 * 110.79409 * 91.80881 * 25 24 17
42 42 H 1.08999 * 110.79098 * 215.08385 * 25 24 17
43 43 H 1.08998 * 110.31133 * 281.73412 * 26 16 15
44 44 H 1.09004 * 110.30259 * 43.89081 * 26 16 15
45 45 H 1.09000 * 109.49517 * 58.58291 * 27 12 11
46 46 H 1.08996 * 109.49647 * 178.68112 * 27 12 11
47 47 H 1.08998 * 109.58493 * 246.19967 * 28 9 7
48 48 H 1.08995 * 109.59005 * 6.48321 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1040 1.6963 -1.2125
5 1 1.2853 2.7465 0.0006
6 1 3.1040 1.6964 1.2126
7 6 2.0102 -1.2022 0.0005
8 1 3.0552 -1.2226 -0.2717
9 7 1.3699 -2.3623 0.3462
10 6 0.2259 -2.3399 1.2677
11 6 0.4970 -3.3189 2.4143
12 6 0.8116 -4.7006 1.8362
13 6 1.0492 -5.6895 2.9794
14 7 1.2326 -7.0392 2.4292
15 6 1.4486 -7.9563 3.4336
16 6 1.6469 -9.2910 3.1368
17 6 1.8622 -10.1933 4.1750
18 7 1.8758 -9.7710 5.4251
19 6 1.6866 -8.4828 5.7283
20 7 1.6568 -7.8288 6.8845
21 6 1.4470 -6.5369 6.6640
22 7 1.3249 -6.3243 5.3764
23 7 1.4769 -7.5626 4.7400
24 6 2.0509 -11.5829 3.6046
25 6 2.3651 -11.3686 2.1088
26 6 1.6788 -10.0182 1.8120
27 6 2.0671 -4.6173 0.9651
28 6 1.8137 -3.6529 -0.1979
29 1 -0.4850 0.8400 -0.0004
30 1 -0.6772 -2.6404 0.7364
31 1 0.0965 -1.3346 1.6687
32 1 -0.3836 -3.3838 3.0534
33 1 1.3467 -2.9675 2.9996
34 1 -0.0286 -5.0409 1.2309
35 1 1.9421 -5.3979 3.5323
36 1 0.1892 -5.6839 3.6492
37 1 1.9839 -7.0561 1.7559
38 1 1.3790 -5.7778 7.4292
39 1 2.8838 -12.0841 4.0977
40 1 1.1375 -12.1663 3.7205
41 1 3.4406 -11.3002 1.9452
42 1 1.9334 -12.1665 1.5046
43 1 0.6653 -10.1819 1.4457
44 1 2.2582 -9.4513 1.0832
45 1 2.9019 -4.2535 1.5640
46 1 2.3039 -5.6062 0.5727
47 1 1.0402 -4.0605 -0.8486
48 1 2.7331 -3.5131 -0.7663
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000865606141.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:13
Heat of formation + Delta-G solvation = 151.757107 kcal
Electronic energy + Delta-G solvation = -30094.515195 eV
Core-core repulsion = 26186.883467 eV
Total energy + Delta-G solvation = -3907.631728 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.186 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-44.09331 -40.88609 -39.93868 -38.24176 -36.53831 -35.44166 -33.82380 -32.74143
-31.79838 -31.39716 -30.58497 -28.58916 -28.05106 -25.79576 -25.13788 -23.95292
-23.78852 -22.82492 -22.48921 -21.54418 -20.74146 -19.44385 -18.78001 -18.73046
-18.34040 -17.62885 -16.88141 -16.49161 -16.32170 -15.84172 -15.65864 -15.36206
-15.23801 -14.89578 -14.84092 -14.44884 -14.26143 -14.02512 -13.91330 -13.74203
-13.59862 -13.35378 -13.09579 -12.94123 -12.85914 -12.68660 -12.58467 -12.30333
-12.06653 -12.04432 -11.93018 -11.77197 -11.75078 -11.30149 -11.23344 -11.19127
-11.04544 -10.82417 -10.55527 -10.39238 -9.13989 -8.69935 -7.89593 -5.35054
-0.60127 -0.36139 0.65303 1.44319 1.44896 1.47122 1.53563 2.05350
2.23103 2.32712 2.49212 2.93358 3.25048 3.44412 3.55519 3.66407
3.71649 3.78303 3.81941 3.95629 4.02093 4.26478 4.27245 4.34230
4.46719 4.49644 4.57199 4.64265 4.69464 4.71259 4.83739 4.86950
4.88353 4.98151 5.00041 5.00849 5.06964 5.17604 5.21313 5.26901
5.27364 5.30609 5.35395 5.42502 5.46322 5.53591 5.63003 5.68189
5.75538 6.37330 6.42941 6.83329 7.13041 7.85063 8.36298 9.16641
Molecular weight = 342.19amu
Principal moments of inertia in cm(-1)
A = 0.018026 B = 0.002591 C = 0.002354
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1552.925083 B =10804.372397 C =11891.151126
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.051 4.051
3 Si 0.965 3.035
4 H -0.273 1.273
5 H -0.294 1.294
6 H -0.280 1.280
7 C -0.264 4.264
8 H 0.066 0.934
9 N -0.611 5.611
10 C 0.180 3.820
11 C -0.118 4.118
12 C -0.068 4.068
13 C 0.081 3.919
14 N -0.589 5.589
15 C 0.389 3.611
16 C -0.240 4.240
17 C 0.239 3.761
18 N -0.516 5.516
19 C 0.452 3.548
20 N -0.568 5.568
21 C 0.250 3.750
22 N -0.359 5.359
23 N -0.358 5.358
24 C -0.070 4.070
25 C -0.105 4.105
26 C -0.051 4.051
27 C -0.117 4.117
28 C 0.142 3.858
29 H 0.250 0.750
30 H -0.004 1.004
31 H 0.050 0.950
32 H 0.061 0.939
33 H 0.047 0.953
34 H 0.071 0.929
35 H 0.056 0.944
36 H 0.077 0.923
37 H 0.391 0.609
38 H 0.264 0.736
39 H 0.108 0.892
40 H 0.123 0.877
41 H 0.088 0.912
42 H 0.119 0.881
43 H 0.099 0.901
44 H 0.094 0.906
45 H 0.050 0.950
46 H 0.087 0.913
47 H 0.017 0.983
48 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.593 -25.981 4.428 26.753
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.246 4.246
3 Si 0.793 3.207
4 H -0.199 1.199
5 H -0.220 1.220
6 H -0.206 1.206
7 C -0.395 4.395
8 H 0.084 0.916
9 N -0.335 5.335
10 C 0.054 3.946
11 C -0.157 4.157
12 C -0.087 4.087
13 C -0.046 4.046
14 N -0.222 5.222
15 C 0.170 3.830
16 C -0.252 4.252
17 C 0.080 3.920
18 N -0.237 5.237
19 C 0.091 3.909
20 N -0.304 5.304
21 C -0.051 4.051
22 N -0.190 5.190
23 N -0.142 5.142
24 C -0.107 4.107
25 C -0.143 4.143
26 C -0.090 4.090
27 C -0.156 4.156
28 C 0.017 3.983
29 H 0.059 0.941
30 H 0.014 0.986
31 H 0.069 0.931
32 H 0.079 0.921
33 H 0.066 0.934
34 H 0.090 0.910
35 H 0.074 0.926
36 H 0.096 0.904
37 H 0.227 0.773
38 H 0.279 0.721
39 H 0.127 0.873
40 H 0.141 0.859
41 H 0.107 0.893
42 H 0.137 0.863
43 H 0.117 0.883
44 H 0.113 0.887
45 H 0.069 0.931
46 H 0.105 0.895
47 H 0.035 0.965
48 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 3.891 -25.663 5.199 26.472
hybrid contribution 0.468 2.404 -0.089 2.451
sum 4.359 -23.258 5.110 24.209
Atomic orbital electron populations
1.70175 1.06675 1.25913 1.55351 1.25799 0.96030 1.01518 1.01282
0.85373 0.77616 0.79330 0.78337 1.19907 1.22023 1.20623 1.19481
0.92822 0.86165 1.40996 0.91616 1.44314 1.35896 1.02508 1.50791
1.20523 0.87812 0.97355 0.88894 1.21930 1.00418 0.95282 0.98103
1.20995 0.98818 0.93537 0.95399 1.22394 1.02485 0.83845 0.95882
1.57098 1.45106 1.07132 1.12819 1.19466 0.91524 0.93341 0.78674
1.21251 1.12953 0.88392 1.02568 1.23232 0.83794 0.99810 0.85168
1.67157 1.24661 1.08844 1.23024 1.22893 0.95441 0.87479 0.85074
1.70899 1.32119 1.05782 1.21569 1.27082 0.91314 0.92956 0.93728
1.78763 1.34214 0.97511 1.08520 1.49388 1.47635 1.09568 1.07589
1.21430 1.05693 0.87362 0.96253 1.22408 1.02300 0.96595 0.92968
1.20895 1.03496 0.94932 0.89633 1.21961 0.96689 0.99530 0.97405
1.21028 0.97394 0.85850 0.94065 0.94112 0.98625 0.93119 0.92085
0.93404 0.91023 0.92592 0.90430 0.77303 0.72062 0.87334 0.85943
0.89312 0.86313 0.88251 0.88713 0.93113 0.89453 0.96502 0.92671
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.79 11.19 21.65 0.24 -55.54 16
2 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16
3 Si 0.97 45.07 29.59 68.60 2.03 47.10 16
4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16
5 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16
6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
7 C -0.26 -14.57 9.58 84.03 0.81 -13.76 16
8 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16
9 N -0.61 -30.50 2.99 -699.13 -2.09 -32.60 16
10 C 0.18 8.74 5.30 86.36 0.46 9.20 16
11 C -0.12 -4.45 5.36 30.67 0.16 -4.28 16
12 C -0.07 -2.09 2.36 -10.76 -0.03 -2.11 16
13 C 0.08 2.17 3.59 86.30 0.31 2.48 16
14 N -0.59 -12.42 6.42 -342.90 -2.20 -14.62 16
15 C 0.39 8.87 7.16 132.00 0.94 9.82 16
16 C -0.24 -3.99 6.11 -19.50 -0.12 -4.11 16
17 C 0.24 4.31 7.35 43.00 0.32 4.62 16
18 N -0.52 -13.87 10.46 -185.33 -1.94 -15.81 16
19 C 0.45 13.82 9.00 261.64 2.35 16.18 16
20 N -0.57 -17.69 11.26 -203.52 -2.29 -19.98 16
21 C 0.25 6.51 12.98 180.82 2.35 8.86 16
22 N -0.36 -10.39 8.60 -61.35 -0.53 -10.92 16
23 N -0.36 -10.13 3.73 -195.06 -0.73 -10.86 16
24 C -0.07 -0.48 6.76 30.52 0.21 -0.28 16
25 C -0.11 -0.25 7.07 31.51 0.22 -0.03 16
26 C -0.05 -0.37 6.70 30.46 0.20 -0.17 16
27 C -0.12 -3.48 5.16 30.67 0.16 -3.33 16
28 C 0.14 5.58 6.52 86.36 0.56 6.14 16
29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16
30 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16
31 H 0.05 2.82 6.07 -2.38 -0.01 2.80 16
32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16
33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16
35 H 0.06 1.65 6.87 -2.39 -0.02 1.63 16
36 H 0.08 2.36 6.91 -2.38 -0.02 2.34 16
37 H 0.39 6.41 6.97 -89.69 -0.62 5.78 16
38 H 0.26 4.25 8.06 -2.91 -0.02 4.23 16
39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16
40 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16
41 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16
42 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16
43 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16
44 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16
45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
46 H 0.09 1.87 6.62 -2.39 -0.02 1.85 16
47 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16
48 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16
Total: -1.00 -77.28 374.78 2.19 -75.09
By element:
Atomic # 1 Polarization: 10.98 SS G_CDS: 0.36 Total: 11.35 kcal
Atomic # 6 Polarization: 17.46 SS G_CDS: 9.33 Total: 26.79 kcal
Atomic # 7 Polarization: -150.80 SS G_CDS: -9.53 Total: -160.33 kcal
Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal
Total: -77.28 2.19 -75.09 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000865606141.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 226.849 kcal
(2) G-P(sol) polarization free energy of solvation -77.278 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.571 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) 151.757 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds