Wall clock time and date at job start Sat Apr 11 2020 06:43:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.34770 * 120.00072 * 2 1
4 4 O 1.21601 * 120.00329 * 184.30171 * 3 2 1
5 5 C 1.47467 * 119.99866 * 4.29864 * 3 2 1
6 6 C 1.39004 * 120.29621 * 312.07134 * 5 3 2
7 7 C 1.38501 * 120.36774 * 180.02562 * 6 5 3
8 8 C 1.37835 * 120.79135 * 0.02607 * 7 6 5
9 9 C 1.39215 * 120.19400 * 359.95460 * 8 7 6
10 10 N 1.37224 * 133.64712 * 179.69992 * 9 8 7
11 11 H 0.96998 * 125.98439 * 359.97438 * 10 9 8
12 12 N 1.40026 * 108.03198 * 179.91115 * 10 9 8
13 13 C 1.30266 * 109.70489 * 0.39282 * 12 10 9
14 14 C 1.40674 * 119.79360 * 0.02562 * 9 8 7
15 15 C 1.46503 * 119.99817 * 179.97438 * 2 1 3
16 16 C 1.53002 * 109.47258 * 59.99990 * 15 2 1
17 17 C 1.52991 * 109.47134 * 180.02562 * 16 15 2
18 18 C 1.53002 * 109.47392 * 59.99670 * 17 16 15
19 19 N 1.46508 * 109.47016 * 180.02562 * 18 17 16
20 20 C 1.36942 * 119.99435 * 275.00072 * 19 18 17
21 21 H 1.07998 * 120.00526 * 359.97438 * 20 19 18
22 22 C 1.38813 * 119.99210 * 180.02562 * 20 19 18
23 23 N 1.31614 * 120.00303 * 0.02562 * 22 20 19
24 24 Si 1.86805 * 119.99664 * 179.97438 * 22 20 19
25 25 H 1.48498 * 109.47127 * 59.99667 * 24 22 20
26 26 H 1.48498 * 109.47181 * 180.02562 * 24 22 20
27 27 H 1.48497 * 109.47005 * 300.00335 * 24 22 20
28 28 C 1.52997 * 109.46875 * 299.99919 * 18 17 16
29 29 C 1.52995 * 109.47196 * 60.00383 * 28 18 17
30 30 H 1.08994 * 109.47676 * 92.98926 * 1 2 3
31 31 H 1.09003 * 109.46861 * 212.98725 * 1 2 3
32 32 H 1.08997 * 109.47011 * 332.98523 * 1 2 3
33 33 H 1.08000 * 119.81977 * 0.02562 * 6 5 3
34 34 H 1.07998 * 119.60855 * 180.02562 * 7 6 5
35 35 H 1.07992 * 119.90226 * 179.97438 * 8 7 6
36 36 H 1.07999 * 125.64856 * 179.77785 * 13 12 10
37 37 H 1.09004 * 109.46818 * 180.02562 * 15 2 1
38 38 H 1.09002 * 109.46611 * 299.99956 * 16 15 2
39 39 H 1.08997 * 109.46711 * 59.99467 * 16 15 2
40 40 H 1.09002 * 109.47193 * 299.99425 * 17 16 15
41 41 H 1.09003 * 109.47179 * 179.97438 * 17 16 15
42 42 H 1.08994 * 109.46922 * 60.00545 * 18 17 16
43 43 H 0.97000 * 120.00000 * 95.00069 * 19 18 17
44 44 H 0.97005 * 119.99987 * 180.02562 * 23 22 20
45 45 H 1.08992 * 109.47549 * 299.99613 * 28 18 17
46 46 H 1.09008 * 109.46416 * 179.97438 * 28 18 17
47 47 H 1.09003 * 109.47331 * 179.97438 * 29 28 18
48 48 H 1.09002 * 109.47595 * 59.99203 * 29 28 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 3.3523 1.1687 -0.0790
5 6 1.4046 2.4424 0.0957
6 6 0.3022 2.6796 -0.7170
7 6 -0.3882 3.8770 -0.6287
8 6 0.0031 4.8530 0.2625
9 6 1.1029 4.6450 1.0902
10 7 1.7239 5.4053 2.0491
11 1 1.4639 6.2981 2.3252
12 7 2.7978 4.6662 2.5600
13 6 2.8623 3.5123 1.9589
14 6 1.8158 3.4347 1.0145
15 6 2.1975 -1.2688 0.0006
16 6 1.8279 -2.0717 -1.2483
17 6 2.5923 -3.3969 -1.2474
18 6 2.2222 -4.1984 0.0023
19 7 2.9547 -5.4671 0.0034
20 6 2.4559 -6.5462 -0.6764
21 1 1.5225 -6.4621 -1.2129
22 6 3.1498 -7.7485 -0.6748
23 7 4.2867 -7.8515 -0.0197
24 14 2.4692 -9.2208 -1.6015
25 1 2.3402 -8.8828 -3.0417
26 1 3.3910 -10.3743 -1.4438
27 1 1.1348 -9.5759 -1.0551
28 6 2.5919 -3.3955 1.2511
29 6 1.8274 -2.0702 1.2502
30 1 -0.3634 -0.0536 -1.0262
31 1 -0.3633 -0.8620 0.5595
32 1 -0.3633 0.9155 0.4668
33 1 -0.0179 1.9259 -1.4213
34 1 -1.2433 4.0482 -1.2658
35 1 -0.5454 5.7815 0.3191
36 1 3.5948 2.7424 2.1513
37 1 3.2692 -1.0696 0.0009
38 1 0.7562 -2.2708 -1.2481
39 1 2.0911 -1.5004 -2.1385
40 1 3.6641 -3.1981 -1.2473
41 1 2.3286 -3.9691 -2.1369
42 1 1.1505 -4.3972 0.0021
43 1 3.7930 -5.5428 0.4856
44 1 4.7717 -8.6915 -0.0190
45 1 3.6636 -3.1967 1.2512
46 1 2.3278 -3.9664 2.1413
47 1 2.0904 -1.4984 2.1401
48 1 0.7556 -2.2690 1.2501
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000963779680.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:36
Heat of formation + Delta-G solvation = 64.752449 kcal
Electronic energy + Delta-G solvation = -29503.921612 eV
Core-core repulsion = 25560.224328 eV
Total energy + Delta-G solvation = -3943.697284 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.93918 -40.24458 -38.13104 -37.22944 -35.47262 -33.54141 -32.83957 -31.00080
-30.40445 -30.35064 -29.86205 -27.70997 -26.93058 -24.52327 -23.41407 -22.91058
-22.27978 -22.08350 -21.20148 -19.80921 -19.27975 -18.01694 -17.52185 -17.00075
-16.69121 -16.17083 -15.76433 -15.46647 -15.15656 -15.09280 -14.68442 -14.29748
-13.95562 -13.87925 -13.65110 -13.55735 -13.28345 -12.92726 -12.72140 -12.54836
-12.33857 -12.10843 -12.03057 -11.89643 -11.77420 -11.41431 -11.31470 -10.87368
-10.76775 -10.72651 -10.70358 -10.62094 -10.19356 -10.12984 -9.92999 -9.70011
-9.55018 -9.11147 -8.85323 -8.65809 -8.44628 -6.92277 -5.73432 -3.01978
0.19354 0.97491 2.13143 2.28728 2.51751 2.81229 3.35711 3.45244
3.49646 3.50816 4.04020 4.28173 4.40402 4.51437 4.56965 4.61027
4.79293 4.90884 4.97341 5.03317 5.18509 5.24109 5.30977 5.32242
5.42145 5.48730 5.54225 5.60012 5.66541 5.79212 5.79746 5.85922
5.89784 5.91454 5.97515 6.06536 6.24983 6.29123 6.29721 6.32135
6.45216 6.59293 6.65943 6.72486 6.83716 7.00497 7.15327 7.16060
7.25219 7.71827 7.99577 8.45391 9.56153 10.15244 10.49671 11.49229
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.028009 B = 0.002100 C = 0.002014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.443146 B =13328.603634 C =13897.564390
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.067 3.933
2 N -0.600 5.600
3 C 0.555 3.445
4 O -0.528 6.528
5 C -0.043 4.043
6 C -0.126 4.126
7 C -0.073 4.073
8 C -0.125 4.125
9 C 0.123 3.877
10 N -0.508 5.508
11 H 0.442 0.558
12 N -0.248 5.248
13 C 0.087 3.913
14 C -0.137 4.137
15 C 0.139 3.861
16 C -0.120 4.120
17 C -0.132 4.132
18 C 0.178 3.822
19 N -0.726 5.726
20 C -0.237 4.237
21 H 0.069 0.931
22 C -0.015 4.015
23 N -0.933 5.933
24 Si 0.906 3.094
25 H -0.286 1.286
26 H -0.292 1.292
27 H -0.287 1.287
28 C -0.121 4.121
29 C -0.119 4.119
30 H 0.060 0.940
31 H 0.076 0.924
32 H 0.076 0.924
33 H 0.137 0.863
34 H 0.138 0.862
35 H 0.130 0.870
36 H 0.197 0.803
37 H 0.102 0.898
38 H 0.061 0.939
39 H 0.056 0.944
40 H 0.057 0.943
41 H 0.064 0.936
42 H 0.045 0.955
43 H 0.384 0.616
44 H 0.255 0.745
45 H 0.062 0.938
46 H 0.066 0.934
47 H 0.060 0.940
48 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.500 28.142 1.620 30.836
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 N -0.331 5.331
3 C 0.343 3.657
4 O -0.405 6.405
5 C -0.049 4.049
6 C -0.146 4.146
7 C -0.094 4.094
8 C -0.148 4.148
9 C 0.006 3.994
10 N -0.223 5.223
11 H 0.287 0.713
12 N -0.062 5.062
13 C -0.109 4.109
14 C -0.146 4.146
15 C 0.038 3.962
16 C -0.160 4.160
17 C -0.174 4.174
18 C 0.068 3.932
19 N -0.366 5.366
20 C -0.368 4.368
21 H 0.087 0.913
22 C -0.211 4.211
23 N -0.582 5.582
24 Si 0.737 3.263
25 H -0.213 1.213
26 H -0.217 1.217
27 H -0.213 1.213
28 C -0.160 4.160
29 C -0.158 4.158
30 H 0.078 0.922
31 H 0.095 0.905
32 H 0.095 0.905
33 H 0.155 0.845
34 H 0.156 0.844
35 H 0.148 0.852
36 H 0.213 0.787
37 H 0.120 0.880
38 H 0.079 0.921
39 H 0.075 0.925
40 H 0.076 0.924
41 H 0.083 0.917
42 H 0.063 0.937
43 H 0.217 0.783
44 H 0.065 0.935
45 H 0.080 0.920
46 H 0.085 0.915
47 H 0.079 0.921
48 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -11.384 28.748 2.422 31.015
hybrid contribution -0.667 -0.869 -0.923 1.433
sum -12.051 27.879 1.499 30.409
Atomic orbital electron populations
1.22055 0.79751 1.03726 1.02086 1.47912 1.07123 1.05856 1.72235
1.18246 0.87199 0.83465 0.76821 1.90821 1.13304 1.87022 1.49353
1.19413 0.95501 0.93511 0.96437 1.21256 0.94685 0.98496 1.00134
1.20921 0.99202 0.92287 0.96965 1.20204 0.96158 1.01023 0.97382
1.18803 0.95723 0.91868 0.93037 1.46116 1.25532 1.17211 1.33456
0.71285 1.76811 1.04335 1.05359 1.19717 1.24021 0.97918 0.95502
0.93467 1.18634 0.99185 0.94964 1.01820 1.21310 0.97948 0.81169
0.95822 1.21852 1.00780 0.97004 0.96323 1.22238 0.99686 0.93808
1.01622 1.20223 0.95693 0.86220 0.91043 1.42435 1.26072 1.06544
1.61528 1.19188 1.04084 0.89469 1.24107 0.91300 1.24742 0.97319
0.97970 1.01039 1.69650 1.16127 1.25851 1.46531 0.86291 0.77830
0.82621 0.79582 1.21324 1.21749 1.21339 1.21768 1.00086 0.94379
0.99773 1.21818 1.00810 0.96500 0.96693 0.92194 0.90499 0.90498
0.84479 0.84439 0.85213 0.78675 0.87958 0.92072 0.92508 0.92419
0.91690 0.93657 0.78279 0.93499 0.91967 0.91486 0.92145 0.91748
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.52 8.13 59.85 0.49 1.01 16
2 N -0.60 -6.75 2.76 -175.18 -0.48 -7.23 16
3 C 0.56 7.09 7.14 -12.50 -0.09 7.00 16
4 O -0.53 -8.62 16.16 5.28 0.09 -8.54 16
5 C -0.04 -0.44 4.96 -104.67 -0.52 -0.96 16
6 C -0.13 -0.94 7.57 -39.20 -0.30 -1.24 16
7 C -0.07 -0.41 10.00 -39.63 -0.40 -0.81 16
8 C -0.13 -0.78 10.06 -39.37 -0.40 -1.17 16
9 C 0.12 1.09 7.32 -84.17 -0.62 0.47 16
10 N -0.51 -4.25 7.45 32.35 0.24 -4.01 16
11 H 0.44 2.18 8.96 -182.66 -1.64 0.54 16
12 N -0.25 -2.72 12.58 30.81 0.39 -2.33 16
13 C 0.09 0.98 11.65 -17.10 -0.20 0.78 16
14 C -0.14 -1.50 5.97 -106.68 -0.64 -2.13 16
15 C 0.14 1.84 2.52 -67.93 -0.17 1.67 16
16 C -0.12 -1.65 5.20 -26.73 -0.14 -1.79 16
17 C -0.13 -2.31 5.50 -26.73 -0.15 -2.46 16
18 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16
19 N -0.73 -18.00 5.12 -53.42 -0.27 -18.27 16
20 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16
21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16
22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16
23 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16
24 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16
25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16
26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
28 C -0.12 -1.96 5.39 -26.74 -0.14 -2.10 16
29 C -0.12 -1.55 5.18 -26.73 -0.14 -1.68 16
30 H 0.06 0.39 7.52 -51.93 -0.39 0.00 16
31 H 0.08 0.58 6.43 -51.93 -0.33 0.25 16
32 H 0.08 0.51 5.64 -51.93 -0.29 0.22 16
33 H 0.14 0.82 6.43 -52.49 -0.34 0.48 16
34 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16
35 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16
36 H 0.20 2.06 8.06 -52.49 -0.42 1.63 16
37 H 0.10 1.59 6.91 -51.93 -0.36 1.23 16
38 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16
39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
41 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16
42 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16
43 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16
44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
46 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16
47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
48 H 0.06 0.76 6.67 -51.93 -0.35 0.41 16
LS Contribution 384.07 15.07 5.79 5.79
Total: -1.00 -34.11 384.07 -10.58 -44.69
By element:
Atomic # 1 Polarization: 15.69 SS G_CDS: -8.18 Total: 7.51 kcal
Atomic # 6 Polarization: -3.56 SS G_CDS: -3.84 Total: -7.39 kcal
Atomic # 7 Polarization: -59.97 SS G_CDS: 0.60 Total: -59.38 kcal
Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.54 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -34.11 -10.58 -44.69 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963779680.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.439 kcal
(2) G-P(sol) polarization free energy of solvation -34.109 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.329 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.752 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds