Wall clock time and date at job start Sat Apr 11 2020 06:43:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.34770 * 120.00072 * 2 1
4 4 O 1.21601 * 120.00329 * 184.30171 * 3 2 1
5 5 C 1.47467 * 119.99866 * 4.29864 * 3 2 1
6 6 C 1.39004 * 120.29621 * 312.07134 * 5 3 2
7 7 C 1.38501 * 120.36774 * 180.02562 * 6 5 3
8 8 C 1.37835 * 120.79135 * 0.02607 * 7 6 5
9 9 C 1.39215 * 120.19400 * 359.95460 * 8 7 6
10 10 N 1.37224 * 133.64712 * 179.69992 * 9 8 7
11 11 H 0.96998 * 125.98439 * 359.97438 * 10 9 8
12 12 N 1.40026 * 108.03198 * 179.91115 * 10 9 8
13 13 C 1.30266 * 109.70489 * 0.39282 * 12 10 9
14 14 C 1.40674 * 119.79360 * 0.02562 * 9 8 7
15 15 C 1.46503 * 119.99817 * 179.97438 * 2 1 3
16 16 C 1.53002 * 109.47258 * 59.99990 * 15 2 1
17 17 C 1.52991 * 109.47134 * 180.02562 * 16 15 2
18 18 C 1.53002 * 109.47392 * 59.99670 * 17 16 15
19 19 N 1.46508 * 109.47016 * 180.02562 * 18 17 16
20 20 C 1.36942 * 119.99435 * 275.00072 * 19 18 17
21 21 H 1.07998 * 120.00526 * 359.97438 * 20 19 18
22 22 C 1.38813 * 119.99210 * 180.02562 * 20 19 18
23 23 N 1.31614 * 120.00303 * 0.02562 * 22 20 19
24 24 Si 1.86805 * 119.99664 * 179.97438 * 22 20 19
25 25 H 1.48498 * 109.47127 * 59.99667 * 24 22 20
26 26 H 1.48498 * 109.47181 * 180.02562 * 24 22 20
27 27 H 1.48497 * 109.47005 * 300.00335 * 24 22 20
28 28 C 1.52997 * 109.46875 * 299.99919 * 18 17 16
29 29 C 1.52995 * 109.47196 * 60.00383 * 28 18 17
30 30 H 1.08994 * 109.47676 * 92.98926 * 1 2 3
31 31 H 1.09003 * 109.46861 * 212.98725 * 1 2 3
32 32 H 1.08997 * 109.47011 * 332.98523 * 1 2 3
33 33 H 1.08000 * 119.81977 * 0.02562 * 6 5 3
34 34 H 1.07998 * 119.60855 * 180.02562 * 7 6 5
35 35 H 1.07992 * 119.90226 * 179.97438 * 8 7 6
36 36 H 1.07999 * 125.64856 * 179.77785 * 13 12 10
37 37 H 1.09004 * 109.46818 * 180.02562 * 15 2 1
38 38 H 1.09002 * 109.46611 * 299.99956 * 16 15 2
39 39 H 1.08997 * 109.46711 * 59.99467 * 16 15 2
40 40 H 1.09002 * 109.47193 * 299.99425 * 17 16 15
41 41 H 1.09003 * 109.47179 * 179.97438 * 17 16 15
42 42 H 1.08994 * 109.46922 * 60.00545 * 18 17 16
43 43 H 0.97000 * 120.00000 * 95.00069 * 19 18 17
44 44 H 0.97005 * 119.99987 * 180.02562 * 23 22 20
45 45 H 1.08992 * 109.47549 * 299.99613 * 28 18 17
46 46 H 1.09008 * 109.46416 * 179.97438 * 28 18 17
47 47 H 1.09003 * 109.47331 * 179.97438 * 29 28 18
48 48 H 1.09002 * 109.47595 * 59.99203 * 29 28 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 3.3523 1.1687 -0.0790
5 6 1.4046 2.4424 0.0957
6 6 0.3022 2.6796 -0.7170
7 6 -0.3882 3.8770 -0.6287
8 6 0.0031 4.8530 0.2625
9 6 1.1029 4.6450 1.0902
10 7 1.7239 5.4053 2.0491
11 1 1.4639 6.2981 2.3252
12 7 2.7978 4.6662 2.5600
13 6 2.8623 3.5123 1.9589
14 6 1.8158 3.4347 1.0145
15 6 2.1975 -1.2688 0.0006
16 6 1.8279 -2.0717 -1.2483
17 6 2.5923 -3.3969 -1.2474
18 6 2.2222 -4.1984 0.0023
19 7 2.9547 -5.4671 0.0034
20 6 2.4559 -6.5462 -0.6764
21 1 1.5225 -6.4621 -1.2129
22 6 3.1498 -7.7485 -0.6748
23 7 4.2867 -7.8515 -0.0197
24 14 2.4692 -9.2208 -1.6015
25 1 2.3402 -8.8828 -3.0417
26 1 3.3910 -10.3743 -1.4438
27 1 1.1348 -9.5759 -1.0551
28 6 2.5919 -3.3955 1.2511
29 6 1.8274 -2.0702 1.2502
30 1 -0.3634 -0.0536 -1.0262
31 1 -0.3633 -0.8620 0.5595
32 1 -0.3633 0.9155 0.4668
33 1 -0.0179 1.9259 -1.4213
34 1 -1.2433 4.0482 -1.2658
35 1 -0.5454 5.7815 0.3191
36 1 3.5948 2.7424 2.1513
37 1 3.2692 -1.0696 0.0009
38 1 0.7562 -2.2708 -1.2481
39 1 2.0911 -1.5004 -2.1385
40 1 3.6641 -3.1981 -1.2473
41 1 2.3286 -3.9691 -2.1369
42 1 1.1505 -4.3972 0.0021
43 1 3.7930 -5.5428 0.4856
44 1 4.7717 -8.6915 -0.0190
45 1 3.6636 -3.1967 1.2512
46 1 2.3278 -3.9664 2.1413
47 1 2.0904 -1.4984 2.1401
48 1 0.7556 -2.2690 1.2501
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000963779680.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:35
Heat of formation + Delta-G solvation = 42.451172 kcal
Electronic energy + Delta-G solvation = -29504.888668 eV
Core-core repulsion = 25560.224328 eV
Total energy + Delta-G solvation = -3944.664340 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.61398 -41.20430 -39.34967 -37.92103 -36.75440 -35.10560 -33.66046 -32.62696
-31.68654 -31.03432 -30.70337 -29.03472 -27.79783 -25.84244 -24.74989 -23.58645
-23.52158 -22.95534 -22.29080 -20.95926 -20.42605 -19.10508 -18.74091 -18.17122
-17.57320 -17.09228 -16.74919 -16.53544 -16.06867 -15.86588 -15.78159 -15.46646
-15.34703 -15.12921 -14.90206 -14.49191 -14.45170 -14.08040 -13.98385 -13.44089
-13.32839 -13.12051 -13.06165 -12.89313 -12.75077 -12.65788 -12.51210 -12.38457
-12.23045 -12.05041 -12.03952 -11.95693 -11.62498 -11.47652 -11.41275 -11.11234
-10.84914 -10.79461 -9.75134 -9.59834 -9.05623 -8.97195 -7.90612 -5.18982
-0.44481 0.40114 1.35276 1.48452 1.51668 1.57545 1.63773 1.74863
1.95126 2.58965 2.72814 3.34276 3.42150 3.62275 3.72774 3.82875
3.86736 3.90843 3.95043 4.04325 4.24307 4.30617 4.34715 4.39217
4.42434 4.55694 4.57452 4.60724 4.65025 4.72329 4.78835 4.84717
4.87685 4.96145 5.05244 5.14318 5.17248 5.24643 5.25340 5.29134
5.31464 5.39338 5.51106 5.56910 5.59051 5.66706 5.75306 6.28795
6.31565 6.36636 6.50700 7.08520 7.36821 8.14792 8.37026 9.33062
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.028009 B = 0.002100 C = 0.002014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.443146 B =13328.603634 C =13897.564390
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.058 3.942
2 N -0.595 5.595
3 C 0.552 3.448
4 O -0.579 6.579
5 C -0.070 4.070
6 C -0.111 4.111
7 C -0.065 4.065
8 C -0.113 4.113
9 C 0.114 3.886
10 N -0.497 5.497
11 H 0.456 0.544
12 N -0.269 5.269
13 C 0.065 3.935
14 C -0.164 4.164
15 C 0.145 3.855
16 C -0.106 4.106
17 C -0.124 4.124
18 C 0.174 3.826
19 N -0.741 5.741
20 C -0.234 4.234
21 H 0.078 0.922
22 C -0.082 4.082
23 N -0.973 5.973
24 Si 0.972 3.028
25 H -0.278 1.278
26 H -0.299 1.299
27 H -0.276 1.276
28 C -0.113 4.113
29 C -0.107 4.107
30 H 0.082 0.918
31 H 0.084 0.916
32 H 0.091 0.909
33 H 0.156 0.844
34 H 0.179 0.821
35 H 0.165 0.835
36 H 0.186 0.814
37 H 0.072 0.928
38 H 0.085 0.915
39 H 0.061 0.939
40 H 0.037 0.963
41 H 0.048 0.952
42 H 0.051 0.949
43 H 0.370 0.630
44 H 0.249 0.751
45 H 0.047 0.953
46 H 0.062 0.938
47 H 0.067 0.933
48 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.829 30.306 0.344 34.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 N -0.325 5.325
3 C 0.342 3.658
4 O -0.459 6.459
5 C -0.076 4.076
6 C -0.131 4.131
7 C -0.085 4.085
8 C -0.135 4.135
9 C -0.003 4.003
10 N -0.215 5.215
11 H 0.304 0.696
12 N -0.085 5.085
13 C -0.130 4.130
14 C -0.172 4.172
15 C 0.042 3.958
16 C -0.145 4.145
17 C -0.164 4.164
18 C 0.066 3.934
19 N -0.380 5.380
20 C -0.366 4.366
21 H 0.096 0.904
22 C -0.274 4.274
23 N -0.624 5.624
24 Si 0.801 3.199
25 H -0.205 1.205
26 H -0.226 1.226
27 H -0.202 1.202
28 C -0.152 4.152
29 C -0.145 4.145
30 H 0.101 0.899
31 H 0.103 0.897
32 H 0.110 0.890
33 H 0.174 0.826
34 H 0.197 0.803
35 H 0.183 0.817
36 H 0.203 0.797
37 H 0.090 0.910
38 H 0.104 0.896
39 H 0.080 0.920
40 H 0.056 0.944
41 H 0.067 0.933
42 H 0.069 0.931
43 H 0.201 0.799
44 H 0.058 0.942
45 H 0.066 0.934
46 H 0.081 0.919
47 H 0.086 0.914
48 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -15.793 30.965 1.140 34.779
hybrid contribution 0.598 -1.407 -0.543 1.622
sum -15.196 29.558 0.597 33.241
Atomic orbital electron populations
1.22365 0.77121 1.04930 1.03876 1.47889 1.08585 1.04528 1.71494
1.18713 0.86763 0.84592 0.75767 1.90789 1.15626 1.87779 1.51722
1.19278 0.97284 0.92467 0.98579 1.21582 0.93071 0.99680 0.98793
1.21402 0.99610 0.90878 0.96628 1.20709 0.94651 1.02421 0.95697
1.19126 0.96493 0.91132 0.93592 1.46097 1.24692 1.17593 1.33117
0.69629 1.76708 1.05702 1.05618 1.20470 1.23986 0.98672 0.95732
0.94592 1.18821 0.99670 0.96333 1.02403 1.21007 0.96811 0.82282
0.95688 1.21700 1.01428 0.94621 0.96734 1.22031 0.99072 0.95564
0.99778 1.20469 0.95220 0.84651 0.93029 1.42703 1.25983 1.08140
1.61156 1.19609 1.03909 0.90098 1.22982 0.90373 1.25581 0.97974
1.00990 1.02805 1.69825 1.17747 1.26101 1.48749 0.85227 0.77220
0.78873 0.78564 1.20452 1.22575 1.20178 1.21643 0.99812 0.95715
0.98040 1.21702 1.01525 0.94399 0.96902 0.89939 0.89740 0.89027
0.82609 0.80338 0.81710 0.79704 0.91001 0.89611 0.92049 0.94445
0.93344 0.93090 0.79895 0.94226 0.93371 0.91949 0.91448 0.89416
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.70 8.13 127.77 1.04 1.74 16
2 N -0.59 -12.49 2.76 -826.42 -2.28 -14.77 16
3 C 0.55 14.07 7.14 86.68 0.62 14.69 16
4 O -0.58 -20.00 16.16 -4.03 -0.07 -20.07 16
5 C -0.07 -1.38 4.96 -19.90 -0.10 -1.48 16
6 C -0.11 -1.25 7.57 22.52 0.17 -1.08 16
7 C -0.06 -0.40 10.00 22.24 0.22 -0.18 16
8 C -0.11 -0.91 10.06 22.41 0.23 -0.68 16
9 C 0.11 1.79 7.32 39.13 0.29 2.07 16
10 N -0.50 -7.78 7.45 -51.56 -0.38 -8.16 16
11 H 0.46 3.76 8.96 -213.37 -1.91 1.85 16
12 N -0.27 -6.08 12.58 -56.45 -0.71 -6.79 16
13 C 0.06 1.56 11.65 85.65 1.00 2.56 16
14 C -0.16 -3.51 5.97 -21.20 -0.13 -3.64 16
15 C 0.15 3.76 2.52 44.99 0.11 3.87 16
16 C -0.11 -2.74 5.20 30.59 0.16 -2.58 16
17 C -0.12 -4.35 5.50 30.59 0.17 -4.18 16
18 C 0.17 6.69 2.77 44.99 0.12 6.81 16
19 N -0.74 -37.61 5.12 -322.93 -1.65 -39.26 16
20 C -0.23 -12.95 9.93 84.03 0.83 -12.12 16
21 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16
22 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16
23 N -0.97 -60.63 13.06 21.65 0.28 -60.34 16
24 Si 0.97 46.33 29.55 68.60 2.03 48.36 16
25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16
27 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
28 C -0.11 -3.69 5.39 30.59 0.16 -3.53 16
29 C -0.11 -2.64 5.18 30.59 0.16 -2.48 16
30 H 0.08 0.66 7.52 -2.39 -0.02 0.64 16
31 H 0.08 0.92 6.43 -2.39 -0.02 0.90 16
32 H 0.09 0.87 5.64 -2.39 -0.01 0.85 16
33 H 0.16 1.12 6.43 -2.91 -0.02 1.10 16
34 H 0.18 -0.28 8.06 -2.91 -0.02 -0.31 16
35 H 0.17 0.18 8.06 -2.91 -0.02 0.15 16
36 H 0.19 4.51 8.06 -2.91 -0.02 4.49 16
37 H 0.07 2.34 6.91 -2.39 -0.02 2.32 16
38 H 0.09 1.84 7.67 -2.39 -0.02 1.82 16
39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
42 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16
43 H 0.37 20.50 7.80 -92.71 -0.72 19.78 16
44 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16
45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
46 H 0.06 2.08 8.14 -2.38 -0.02 2.07 16
47 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
48 H 0.09 1.80 6.67 -2.39 -0.02 1.78 16
Total: -1.00 -78.48 384.07 1.11 -77.37
By element:
Atomic # 1 Polarization: 29.78 SS G_CDS: -1.63 Total: 28.15 kcal
Atomic # 6 Polarization: -10.00 SS G_CDS: 5.52 Total: -4.47 kcal
Atomic # 7 Polarization: -124.59 SS G_CDS: -4.75 Total: -129.34 kcal
Atomic # 8 Polarization: -20.00 SS G_CDS: -0.07 Total: -20.07 kcal
Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal
Total: -78.48 1.11 -77.37 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963779680.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.818 kcal
(2) G-P(sol) polarization free energy of solvation -78.476 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.451 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds