Wall clock time and date at job start Sat Apr 11 2020 06:43:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34223 * 117.00069 * 2 1
4 4 O 1.20828 * 120.00356 * 0.02562 * 3 2 1
5 5 C 1.50707 * 119.99974 * 179.97438 * 3 2 1
6 6 C 1.52998 * 109.46994 * 175.91387 * 5 3 2
7 7 N 1.46494 * 109.54734 * 305.84851 * 6 5 3
8 8 C 1.34773 * 119.99909 * 303.49693 * 7 6 5
9 9 O 1.21275 * 120.00198 * 354.43824 * 8 7 6
10 10 C 1.50706 * 119.99923 * 174.43266 * 8 7 6
11 11 H 1.08996 * 109.47100 * 40.00591 * 10 8 7
12 12 N 1.46896 * 109.47078 * 160.00236 * 10 8 7
13 13 C 1.52999 * 109.47192 * 280.00276 * 10 8 7
14 14 C 1.53000 * 109.46922 * 175.00187 * 13 10 8
15 15 C 1.52999 * 109.46922 * 180.02562 * 14 13 10
16 16 C 1.50704 * 109.47325 * 179.97438 * 15 14 13
17 17 H 1.08007 * 119.99322 * 359.97438 * 16 15 14
18 18 C 1.37870 * 120.00315 * 180.02562 * 16 15 14
19 19 N 1.31514 * 119.99993 * 359.97438 * 18 16 15
20 20 Si 1.86804 * 119.99902 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.47115 * 90.00266 * 20 18 16
22 22 H 1.48508 * 109.46924 * 209.99942 * 20 18 16
23 23 H 1.48500 * 109.47302 * 329.99757 * 20 18 16
24 24 C 1.53179 * 109.54191 * 66.02857 * 6 5 3
25 25 C 1.53276 * 109.06286 * 176.84867 * 24 6 5
26 26 O 1.42906 * 109.46497 * 302.44207 * 25 24 6
27 27 C 1.42905 * 114.09400 * 61.15811 * 26 25 24
28 28 C 1.53098 * 109.41456 * 298.84667 * 27 26 25
29 29 H 1.09002 * 109.47392 * 59.99433 * 1 2 3
30 30 H 1.09004 * 109.47452 * 179.97438 * 1 2 3
31 31 H 1.09008 * 109.46804 * 300.00151 * 1 2 3
32 32 H 1.09005 * 109.46765 * 55.91768 * 5 3 2
33 33 H 1.09001 * 109.47333 * 295.91890 * 5 3 2
34 34 H 0.97001 * 119.99843 * 123.22366 * 7 6 5
35 35 H 1.00906 * 111.00161 * 59.99771 * 12 10 8
36 36 H 1.00893 * 111.00201 * 183.95348 * 12 10 8
37 37 H 1.09003 * 109.47222 * 294.99685 * 13 10 8
38 38 H 1.08999 * 109.47239 * 54.99843 * 13 10 8
39 39 H 1.08998 * 109.47139 * 300.00038 * 14 13 10
40 40 H 1.08999 * 109.47445 * 59.99782 * 14 13 10
41 41 H 1.09003 * 109.47222 * 299.99498 * 15 14 13
42 42 H 1.09000 * 109.47373 * 60.00191 * 15 14 13
43 43 H 0.96998 * 119.99878 * 180.02562 * 19 18 16
44 44 H 1.09002 * 109.52071 * 296.84184 * 24 6 5
45 45 H 1.09003 * 109.52349 * 57.02869 * 24 6 5
46 46 H 1.09004 * 109.46116 * 182.44515 * 25 24 6
47 47 H 1.09001 * 109.47149 * 62.44789 * 25 24 6
48 48 H 1.09000 * 109.48175 * 178.86193 * 27 26 25
49 49 H 1.09007 * 109.48974 * 58.82734 * 27 26 25
50 50 H 1.09002 * 109.51735 * 297.70170 * 28 27 26
51 51 H 1.09001 * 109.57503 * 177.54665 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5664 1.2748 0.0006
6 6 4.0004 2.7383 -0.1023
7 7 3.3688 3.3558 -1.2710
8 6 3.5447 2.8187 -2.4945
9 8 4.3053 1.8860 -2.6437
10 6 2.7960 3.3772 -3.6772
11 1 2.7663 4.4645 -3.6080
12 7 3.4771 2.9840 -4.9179
13 6 1.3682 2.8273 -3.6829
14 6 0.5715 3.4888 -4.8093
15 6 -0.8564 2.9395 -4.8146
16 6 -1.6414 3.5915 -5.9235
17 1 -1.1691 4.3247 -6.5606
18 6 -2.9627 3.2527 -6.1243
19 7 -3.5380 2.3603 -5.3482
20 14 -3.9355 4.0604 -7.4994
21 1 -3.7991 3.2565 -8.7405
22 1 -5.3676 4.1368 -7.1139
23 1 -3.4131 5.4301 -7.7369
24 6 3.5779 3.4883 1.1647
25 6 4.0866 4.9320 1.0849
26 8 5.5064 4.9285 0.9225
27 6 5.9556 4.2807 -0.2694
28 6 5.5238 2.8121 -0.2443
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8901
32 1 3.9597 0.7185 -0.8503
33 1 3.9524 0.8454 0.9251
34 1 2.8208 4.1490 -1.1636
35 1 3.5176 1.9795 -5.0055
36 1 3.0316 3.3994 -5.7223
37 1 1.3947 1.7492 -3.8414
38 1 0.8922 3.0424 -2.7263
39 1 0.5451 4.5669 -4.6509
40 1 1.0475 3.2738 -5.7659
41 1 -0.8304 1.8613 -4.9727
42 1 -1.3322 3.1550 -3.8579
43 1 -4.4674 2.1217 -5.4897
44 1 2.4908 3.4866 1.2435
45 1 4.0082 2.9987 2.0384
46 1 3.8270 5.4598 2.0027
47 1 3.6247 5.4335 0.2344
48 1 7.0425 4.3391 -0.3273
49 1 5.5183 4.7733 -1.1380
50 1 5.9933 2.3089 0.6010
51 1 5.8272 2.3263 -1.1717
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001346539286.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:24
Heat of formation + Delta-G solvation = -183.547705 kcal
Electronic energy + Delta-G solvation = -32427.261616 eV
Core-core repulsion = 28133.195558 eV
Total energy + Delta-G solvation = -4294.066057 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.203 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.43221 -39.98272 -38.90446 -36.80863 -36.11075 -35.28705 -33.38508 -32.19378
-31.41236 -31.24282 -30.00719 -27.85553 -27.40334 -25.47772 -24.01658 -23.91795
-22.65512 -21.03693 -20.58946 -20.15567 -19.45339 -17.70643 -17.52861 -16.85643
-16.61330 -16.42725 -16.32806 -16.16061 -15.60684 -15.17670 -15.00885 -14.74905
-14.61562 -14.49876 -13.97146 -13.83898 -13.66387 -13.22914 -13.18459 -12.90771
-12.60996 -12.50970 -12.43765 -12.19419 -12.03769 -11.98720 -11.84424 -11.61886
-11.23454 -11.12463 -10.85077 -10.83181 -10.79346 -10.66730 -10.58406 -10.32629
-9.87712 -9.80811 -9.65278 -9.37471 -9.15416 -9.11078 -8.49107 -8.39485
-6.04985 -4.07804 2.14437 2.61260 2.66081 3.03570 3.28228 3.34661
3.37798 3.64038 4.22558 4.26434 4.41369 4.48634 4.69908 4.72484
4.83971 4.85134 4.94489 5.05534 5.10501 5.15305 5.21531 5.22496
5.27176 5.31010 5.33542 5.41595 5.44715 5.51203 5.56704 5.61324
5.74600 5.78031 5.78571 5.89411 5.96528 6.25476 6.37484 6.39743
6.56747 6.72930 6.94172 7.00709 7.14766 7.50148 7.58161 7.60574
7.68720 7.73633 7.94134 8.23692 8.36223 8.99138 9.56723 11.06263
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.012881 B = 0.003000 C = 0.002727
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2173.174200 B = 9332.453714 C =10265.527058
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.362 6.362
3 C 0.463 3.537
4 O -0.496 6.496
5 C -0.130 4.130
6 C 0.196 3.804
7 N -0.715 5.715
8 C 0.528 3.472
9 O -0.535 6.535
10 C 0.075 3.925
11 H 0.097 0.903
12 N -0.829 5.829
13 C -0.145 4.145
14 C -0.108 4.108
15 C 0.024 3.976
16 C -0.522 4.522
17 H 0.055 0.945
18 C 0.057 3.943
19 N -0.895 5.895
20 Si 0.892 3.108
21 H -0.280 1.280
22 H -0.286 1.286
23 H -0.274 1.274
24 C -0.168 4.168
25 C 0.063 3.937
26 O -0.384 6.384
27 C 0.066 3.934
28 C -0.165 4.165
29 H 0.070 0.930
30 H 0.100 0.900
31 H 0.062 0.938
32 H 0.126 0.874
33 H 0.110 0.890
34 H 0.404 0.596
35 H 0.348 0.652
36 H 0.351 0.649
37 H 0.059 0.941
38 H 0.068 0.932
39 H 0.050 0.950
40 H 0.047 0.953
41 H 0.013 0.987
42 H 0.015 0.985
43 H 0.260 0.740
44 H 0.101 0.899
45 H 0.084 0.916
46 H 0.096 0.904
47 H 0.052 0.948
48 H 0.094 0.906
49 H 0.053 0.947
50 H 0.079 0.921
51 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.659 -0.441 15.423 22.706
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.279 6.279
3 C 0.306 3.694
4 O -0.383 6.383
5 C -0.168 4.168
6 C 0.110 3.890
7 N -0.368 5.368
8 C 0.315 3.685
9 O -0.411 6.411
10 C -0.040 4.040
11 H 0.114 0.886
12 N -0.361 5.361
13 C -0.184 4.184
14 C -0.145 4.145
15 C -0.013 4.013
16 C -0.560 4.560
17 H 0.073 0.927
18 C -0.144 4.144
19 N -0.535 5.535
20 Si 0.720 3.280
21 H -0.206 1.206
22 H -0.212 1.212
23 H -0.198 1.198
24 C -0.205 4.205
25 C -0.014 4.014
26 O -0.302 6.302
27 C -0.011 4.011
28 C -0.203 4.203
29 H 0.089 0.911
30 H 0.118 0.882
31 H 0.080 0.920
32 H 0.144 0.856
33 H 0.129 0.871
34 H 0.240 0.760
35 H 0.162 0.838
36 H 0.166 0.834
37 H 0.078 0.922
38 H 0.087 0.913
39 H 0.069 0.931
40 H 0.066 0.934
41 H 0.031 0.969
42 H 0.033 0.967
43 H 0.070 0.930
44 H 0.120 0.880
45 H 0.102 0.898
46 H 0.115 0.885
47 H 0.070 0.930
48 H 0.112 0.888
49 H 0.071 0.929
50 H 0.098 0.902
51 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 17.559 -0.458 15.777 23.610
hybrid contribution -2.425 0.095 -1.111 2.669
sum 15.134 -0.363 14.666 21.078
Atomic orbital electron populations
1.23312 0.75708 1.03826 1.03012 1.86478 1.23892 1.33478 1.84024
1.23564 0.91829 0.81588 0.72468 1.90621 1.67086 1.35925 1.44708
1.21922 0.88536 0.99344 1.07018 1.20004 0.92619 0.90359 0.86041
1.46057 1.52671 1.32235 1.05887 1.20705 0.81082 0.82863 0.83877
1.90575 1.36619 1.28925 1.85015 1.21423 0.92305 1.00783 0.89518
0.88552 1.58705 1.57856 1.16330 1.03206 1.22376 0.93559 1.00675
1.01837 1.21639 0.98462 0.99151 0.95278 1.19060 0.89074 0.96109
0.97104 1.21245 0.95960 1.23474 1.15319 0.92698 1.25026 0.97866
0.95190 0.96351 1.69963 1.12595 1.32321 1.38580 0.86599 0.79268
0.79858 0.82310 1.20642 1.21206 1.19843 1.22719 1.04247 0.97020
0.96556 1.22579 0.81454 0.95353 1.02031 1.87930 1.21608 1.77939
1.42764 1.22519 0.99871 0.91332 0.87390 1.22610 0.93985 0.98643
1.05067 0.91145 0.88152 0.91970 0.85595 0.87148 0.75985 0.83831
0.83420 0.92226 0.91300 0.93101 0.93418 0.96859 0.96669 0.93003
0.88031 0.89780 0.88540 0.93024 0.88767 0.92888 0.90230 0.88116
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.40 10.56 101.05 1.07 1.46 16
2 O -0.36 -4.62 10.56 -39.24 -0.41 -5.03 16
3 C 0.46 5.80 7.46 36.01 0.27 6.07 16
4 O -0.50 -6.93 12.78 -18.75 -0.24 -7.17 16
5 C -0.13 -1.32 4.51 -27.88 -0.13 -1.45 16
6 C 0.20 1.91 0.25 -131.64 -0.03 1.87 16
7 N -0.72 -7.89 2.77 -47.44 -0.13 -8.03 16
8 C 0.53 7.08 6.42 -10.98 -0.07 7.01 16
9 O -0.53 -8.15 12.56 5.56 0.07 -8.08 16
10 C 0.07 1.04 3.21 -68.86 -0.22 0.82 16
11 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16
12 N -0.83 -11.41 8.94 -5.66 -0.05 -11.46 16
13 C -0.14 -2.39 4.84 -26.73 -0.13 -2.52 16
14 C -0.11 -2.09 4.92 -26.73 -0.13 -2.23 16
15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16
16 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16
17 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16
18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
19 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16
20 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16
21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
24 C -0.17 -1.42 4.71 -26.50 -0.12 -1.55 16
25 C 0.06 0.53 6.67 37.30 0.25 0.77 16
26 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16
27 C 0.07 0.61 6.68 37.21 0.25 0.85 16
28 C -0.16 -1.52 4.81 -26.59 -0.13 -1.65 16
29 H 0.07 0.94 8.13 -51.93 -0.42 0.51 16
30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16
31 H 0.06 0.65 8.13 -51.92 -0.42 0.22 16
32 H 0.13 1.48 6.31 -51.93 -0.33 1.16 16
33 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.40 4.22 7.43 -40.82 -0.30 3.92 16
35 H 0.35 4.96 8.58 -39.29 -0.34 4.62 16
36 H 0.35 4.63 7.55 -39.30 -0.30 4.33 16
37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16
39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16
40 H 0.05 0.89 6.87 -51.93 -0.36 0.54 16
41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16
42 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
44 H 0.10 0.98 5.98 -51.93 -0.31 0.67 16
45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16
47 H 0.05 0.42 7.03 -51.93 -0.37 0.06 16
48 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
49 H 0.05 0.53 7.75 -51.93 -0.40 0.12 16
50 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
51 H 0.10 1.12 6.20 -51.93 -0.32 0.79 16
LS Contribution 400.82 15.07 6.04 6.04
Total: -1.00 -32.55 400.82 -7.55 -40.10
By element:
Atomic # 1 Polarization: 19.31 SS G_CDS: -8.48 Total: 10.83 kcal
Atomic # 6 Polarization: -3.78 SS G_CDS: 0.32 Total: -3.46 kcal
Atomic # 7 Polarization: -46.05 SS G_CDS: 0.55 Total: -45.50 kcal
Atomic # 8 Polarization: -23.53 SS G_CDS: -0.96 Total: -24.50 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -32.55 -7.55 -40.10 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001346539286.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -143.446 kcal
(2) G-P(sol) polarization free energy of solvation -32.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.996 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal
(6) G-S(sol) free energy of system = (1) + (5) -183.548 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds