Wall clock time and date at job start Sat Apr 11 2020 06:43:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34223 * 117.00069 * 2 1
4 4 O 1.20828 * 120.00356 * 0.02562 * 3 2 1
5 5 C 1.50707 * 119.99974 * 179.97438 * 3 2 1
6 6 C 1.52998 * 109.46994 * 175.91387 * 5 3 2
7 7 N 1.46494 * 109.54734 * 305.84851 * 6 5 3
8 8 C 1.34773 * 119.99909 * 303.49693 * 7 6 5
9 9 O 1.21275 * 120.00198 * 354.43824 * 8 7 6
10 10 C 1.50706 * 119.99923 * 174.43266 * 8 7 6
11 11 H 1.08996 * 109.47100 * 40.00591 * 10 8 7
12 12 N 1.46896 * 109.47078 * 160.00236 * 10 8 7
13 13 C 1.52999 * 109.47192 * 280.00276 * 10 8 7
14 14 C 1.53000 * 109.46922 * 175.00187 * 13 10 8
15 15 C 1.52999 * 109.46922 * 180.02562 * 14 13 10
16 16 C 1.50704 * 109.47325 * 179.97438 * 15 14 13
17 17 H 1.08007 * 119.99322 * 359.97438 * 16 15 14
18 18 C 1.37870 * 120.00315 * 180.02562 * 16 15 14
19 19 N 1.31514 * 119.99993 * 359.97438 * 18 16 15
20 20 Si 1.86804 * 119.99902 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.47115 * 90.00266 * 20 18 16
22 22 H 1.48508 * 109.46924 * 209.99942 * 20 18 16
23 23 H 1.48500 * 109.47302 * 329.99757 * 20 18 16
24 24 C 1.53179 * 109.54191 * 66.02857 * 6 5 3
25 25 C 1.53276 * 109.06286 * 176.84867 * 24 6 5
26 26 O 1.42906 * 109.46497 * 302.44207 * 25 24 6
27 27 C 1.42905 * 114.09400 * 61.15811 * 26 25 24
28 28 C 1.53098 * 109.41456 * 298.84667 * 27 26 25
29 29 H 1.09002 * 109.47392 * 59.99433 * 1 2 3
30 30 H 1.09004 * 109.47452 * 179.97438 * 1 2 3
31 31 H 1.09008 * 109.46804 * 300.00151 * 1 2 3
32 32 H 1.09005 * 109.46765 * 55.91768 * 5 3 2
33 33 H 1.09001 * 109.47333 * 295.91890 * 5 3 2
34 34 H 0.97001 * 119.99843 * 123.22366 * 7 6 5
35 35 H 1.00906 * 111.00161 * 59.99771 * 12 10 8
36 36 H 1.00893 * 111.00201 * 183.95348 * 12 10 8
37 37 H 1.09003 * 109.47222 * 294.99685 * 13 10 8
38 38 H 1.08999 * 109.47239 * 54.99843 * 13 10 8
39 39 H 1.08998 * 109.47139 * 300.00038 * 14 13 10
40 40 H 1.08999 * 109.47445 * 59.99782 * 14 13 10
41 41 H 1.09003 * 109.47222 * 299.99498 * 15 14 13
42 42 H 1.09000 * 109.47373 * 60.00191 * 15 14 13
43 43 H 0.96998 * 119.99878 * 180.02562 * 19 18 16
44 44 H 1.09002 * 109.52071 * 296.84184 * 24 6 5
45 45 H 1.09003 * 109.52349 * 57.02869 * 24 6 5
46 46 H 1.09004 * 109.46116 * 182.44515 * 25 24 6
47 47 H 1.09001 * 109.47149 * 62.44789 * 25 24 6
48 48 H 1.09000 * 109.48175 * 178.86193 * 27 26 25
49 49 H 1.09007 * 109.48974 * 58.82734 * 27 26 25
50 50 H 1.09002 * 109.51735 * 297.70170 * 28 27 26
51 51 H 1.09001 * 109.57503 * 177.54665 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5664 1.2748 0.0006
6 6 4.0004 2.7383 -0.1023
7 7 3.3688 3.3558 -1.2710
8 6 3.5447 2.8187 -2.4945
9 8 4.3053 1.8860 -2.6437
10 6 2.7960 3.3772 -3.6772
11 1 2.7663 4.4645 -3.6080
12 7 3.4771 2.9840 -4.9179
13 6 1.3682 2.8273 -3.6829
14 6 0.5715 3.4888 -4.8093
15 6 -0.8564 2.9395 -4.8146
16 6 -1.6414 3.5915 -5.9235
17 1 -1.1691 4.3247 -6.5606
18 6 -2.9627 3.2527 -6.1243
19 7 -3.5380 2.3603 -5.3482
20 14 -3.9355 4.0604 -7.4994
21 1 -3.7991 3.2565 -8.7405
22 1 -5.3676 4.1368 -7.1139
23 1 -3.4131 5.4301 -7.7369
24 6 3.5779 3.4883 1.1647
25 6 4.0866 4.9320 1.0849
26 8 5.5064 4.9285 0.9225
27 6 5.9556 4.2807 -0.2694
28 6 5.5238 2.8121 -0.2443
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8901
32 1 3.9597 0.7185 -0.8503
33 1 3.9524 0.8454 0.9251
34 1 2.8208 4.1490 -1.1636
35 1 3.5176 1.9795 -5.0055
36 1 3.0316 3.3994 -5.7223
37 1 1.3947 1.7492 -3.8414
38 1 0.8922 3.0424 -2.7263
39 1 0.5451 4.5669 -4.6509
40 1 1.0475 3.2738 -5.7659
41 1 -0.8304 1.8613 -4.9727
42 1 -1.3322 3.1550 -3.8579
43 1 -4.4674 2.1217 -5.4897
44 1 2.4908 3.4866 1.2435
45 1 4.0082 2.9987 2.0384
46 1 3.8270 5.4598 2.0027
47 1 3.6247 5.4335 0.2344
48 1 7.0425 4.3391 -0.3273
49 1 5.5183 4.7733 -1.1380
50 1 5.9933 2.3089 0.6010
51 1 5.8272 2.3263 -1.1717
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001346539286.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:43:23
Heat of formation + Delta-G solvation = -206.165814 kcal
Electronic energy + Delta-G solvation = -32428.242411 eV
Core-core repulsion = 28133.195558 eV
Total energy + Delta-G solvation = -4295.046852 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.203 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.34683 -40.97163 -39.82828 -37.80369 -37.40672 -36.27762 -35.28931 -33.21551
-32.93962 -32.09944 -30.83864 -29.44087 -28.32388 -27.02477 -24.93118 -24.72624
-24.17139 -22.03946 -21.95663 -21.43088 -20.36199 -18.68640 -18.60152 -18.47116
-17.79497 -17.57442 -17.23417 -16.89730 -16.56726 -16.51929 -16.20196 -16.08081
-15.97026 -15.53947 -15.09504 -14.83898 -14.81417 -14.36288 -14.28349 -14.01778
-13.84459 -13.66449 -13.57747 -13.43671 -13.19053 -13.03936 -12.95010 -12.86642
-12.60350 -12.45348 -12.38720 -12.31207 -11.93156 -11.79925 -11.61336 -11.56306
-11.44175 -11.25056 -11.19817 -10.66161 -10.59316 -10.52298 -10.02558 -9.68837
-8.23176 -6.34891 1.15941 1.38328 1.39373 1.50486 1.57804 1.70933
2.10022 2.38401 2.95762 3.10143 3.42791 3.46929 3.66475 3.69306
3.77380 3.92064 3.99302 4.02755 4.04224 4.22138 4.24587 4.26036
4.35234 4.36132 4.41349 4.49516 4.51896 4.63538 4.69781 4.73251
4.74821 4.81128 4.86369 4.94984 5.04003 5.07907 5.11889 5.14890
5.17958 5.43393 5.47186 5.51722 5.66957 5.80394 6.02369 6.19803
6.24794 6.45943 6.52329 6.70257 6.82282 7.20997 7.35027 8.88593
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.012881 B = 0.003000 C = 0.002727
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2173.174200 B = 9332.453714 C =10265.527058
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.370 6.370
3 C 0.457 3.543
4 O -0.515 6.515
5 C -0.126 4.126
6 C 0.192 3.808
7 N -0.706 5.706
8 C 0.527 3.473
9 O -0.553 6.553
10 C 0.081 3.919
11 H 0.113 0.887
12 N -0.826 5.826
13 C -0.128 4.128
14 C -0.094 4.094
15 C 0.027 3.973
16 C -0.543 4.543
17 H 0.063 0.937
18 C -0.001 4.001
19 N -0.934 5.934
20 Si 0.965 3.035
21 H -0.273 1.273
22 H -0.283 1.283
23 H -0.261 1.261
24 C -0.159 4.159
25 C 0.060 3.940
26 O -0.393 6.393
27 C 0.066 3.934
28 C -0.157 4.157
29 H 0.042 0.958
30 H 0.125 0.875
31 H 0.071 0.929
32 H 0.112 0.888
33 H 0.142 0.858
34 H 0.408 0.592
35 H 0.345 0.655
36 H 0.355 0.645
37 H 0.042 0.958
38 H 0.058 0.942
39 H 0.060 0.940
40 H 0.058 0.942
41 H -0.016 1.016
42 H -0.014 1.014
43 H 0.263 0.737
44 H 0.091 0.909
45 H 0.100 0.900
46 H 0.112 0.888
47 H 0.051 0.949
48 H 0.106 0.894
49 H 0.043 0.957
50 H 0.097 0.903
51 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.702 0.585 15.717 23.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.286 6.286
3 C 0.301 3.699
4 O -0.403 6.403
5 C -0.164 4.164
6 C 0.106 3.894
7 N -0.358 5.358
8 C 0.314 3.686
9 O -0.432 6.432
10 C -0.034 4.034
11 H 0.131 0.869
12 N -0.358 5.358
13 C -0.168 4.168
14 C -0.131 4.131
15 C -0.010 4.010
16 C -0.581 4.581
17 H 0.082 0.918
18 C -0.199 4.199
19 N -0.574 5.574
20 Si 0.789 3.211
21 H -0.198 1.198
22 H -0.209 1.209
23 H -0.185 1.185
24 C -0.196 4.196
25 C -0.017 4.017
26 O -0.312 6.312
27 C -0.010 4.010
28 C -0.195 4.195
29 H 0.061 0.939
30 H 0.144 0.856
31 H 0.089 0.911
32 H 0.130 0.870
33 H 0.160 0.840
34 H 0.244 0.756
35 H 0.159 0.841
36 H 0.170 0.830
37 H 0.061 0.939
38 H 0.077 0.923
39 H 0.079 0.921
40 H 0.077 0.923
41 H 0.002 0.998
42 H 0.005 0.995
43 H 0.072 0.928
44 H 0.109 0.891
45 H 0.118 0.882
46 H 0.130 0.870
47 H 0.069 0.931
48 H 0.124 0.876
49 H 0.062 0.938
50 H 0.115 0.885
51 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 18.617 0.583 16.083 24.609
hybrid contribution -2.775 -0.257 -1.157 3.018
sum 15.842 0.326 14.925 21.768
Atomic orbital electron populations
1.23409 0.75285 1.05258 1.02049 1.86484 1.24427 1.33774 1.83946
1.24086 0.92756 0.81256 0.71799 1.90614 1.67708 1.36396 1.45632
1.21996 0.86722 0.99684 1.07965 1.20200 0.93021 0.90194 0.85946
1.46025 1.52117 1.32012 1.05693 1.20564 0.81009 0.82701 0.84373
1.90574 1.37557 1.29670 1.85349 1.21367 0.90322 1.01580 0.90135
0.86897 1.58724 1.57559 1.16191 1.03299 1.22141 0.95160 0.99412
1.00051 1.21424 0.95167 0.99500 0.97027 1.18960 0.92515 0.94428
0.95084 1.21707 0.96681 1.23732 1.15957 0.91847 1.26003 0.99185
0.95716 0.99010 1.70103 1.13064 1.33780 1.40481 0.85449 0.77473
0.79272 0.78877 1.19805 1.20858 1.18497 1.22648 1.03583 0.97132
0.96270 1.22693 0.80791 0.95357 1.02829 1.87924 1.22371 1.78033
1.42878 1.22540 1.00553 0.91039 0.86914 1.22528 0.93342 0.98726
1.04902 0.93906 0.85636 0.91060 0.86985 0.84024 0.75596 0.84128
0.82997 0.93885 0.92283 0.92124 0.92339 0.99802 0.99541 0.92820
0.89081 0.88169 0.87009 0.93118 0.87607 0.93849 0.88456 0.89842
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.77 10.56 113.37 1.20 1.97 16
2 O -0.37 -9.41 10.56 -51.35 -0.54 -9.95 16
3 C 0.46 11.35 7.46 71.24 0.53 11.89 16
4 O -0.52 -14.45 12.78 21.96 0.28 -14.17 16
5 C -0.13 -2.41 4.51 29.85 0.13 -2.28 16
6 C 0.19 3.48 0.25 3.72 0.00 3.48 16
7 N -0.71 -15.10 2.77 -422.40 -1.17 -16.26 16
8 C 0.53 13.91 6.42 87.66 0.56 14.47 16
9 O -0.55 -16.68 12.56 -3.01 -0.04 -16.71 16
10 C 0.08 2.20 3.21 44.17 0.14 2.34 16
11 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16
12 N -0.83 -22.03 8.94 -171.81 -1.54 -23.56 16
13 C -0.13 -4.27 4.84 30.59 0.15 -4.12 16
14 C -0.09 -3.65 4.92 30.59 0.15 -3.50 16
15 C 0.03 1.43 4.97 29.85 0.15 1.58 16
16 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16
17 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16
18 C 0.00 -0.08 5.46 84.65 0.46 0.38 16
19 N -0.93 -57.01 13.29 21.44 0.28 -56.72 16
20 Si 0.96 44.01 29.54 68.60 2.03 46.04 16
21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16
24 C -0.16 -2.40 4.71 30.75 0.14 -2.25 16
25 C 0.06 0.89 6.67 72.07 0.48 1.37 16
26 O -0.39 -7.06 10.77 -148.98 -1.60 -8.67 16
27 C 0.07 1.11 6.68 72.02 0.48 1.59 16
28 C -0.16 -2.62 4.81 30.69 0.15 -2.48 16
29 H 0.04 1.21 8.13 -2.39 -0.02 1.19 16
30 H 0.13 2.18 8.14 -2.38 -0.02 2.16 16
31 H 0.07 1.49 8.13 -2.38 -0.02 1.47 16
32 H 0.11 2.58 6.31 -2.38 -0.02 2.56 16
33 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16
34 H 0.41 8.21 7.43 -92.71 -0.69 7.52 16
35 H 0.35 9.71 8.58 -89.69 -0.77 8.94 16
36 H 0.35 8.91 7.55 -89.70 -0.68 8.24 16
37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16
38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
39 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16
40 H 0.06 2.15 6.87 -2.39 -0.02 2.14 16
41 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16
42 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16
43 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16
44 H 0.09 1.64 5.98 -2.39 -0.01 1.63 16
45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
46 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16
47 H 0.05 0.76 7.03 -2.39 -0.02 0.74 16
48 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16
49 H 0.04 0.81 7.75 -2.38 -0.02 0.79 16
50 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
51 H 0.08 1.76 6.20 -2.39 -0.01 1.74 16
Total: -1.00 -70.81 400.82 1.49 -69.32
By element:
Atomic # 1 Polarization: 37.89 SS G_CDS: -1.18 Total: 36.71 kcal
Atomic # 6 Polarization: -10.98 SS G_CDS: 4.96 Total: -6.02 kcal
Atomic # 7 Polarization: -94.13 SS G_CDS: -2.42 Total: -96.55 kcal
Atomic # 8 Polarization: -47.60 SS G_CDS: -1.90 Total: -49.50 kcal
Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal
Total: -70.81 1.49 -69.32 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001346539286.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -136.847 kcal
(2) G-P(sol) polarization free energy of solvation -70.811 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.659 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.318 kcal
(6) G-S(sol) free energy of system = (1) + (5) -206.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds